Wall clock time and date at job start Tue Mar 31 2020 13:21:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47096 * 2 1 4 4 C 1.53002 * 109.47483 * 239.99188 * 2 1 3 5 5 C 1.52996 * 109.47030 * 180.02562 * 4 2 1 6 6 C 1.52994 * 109.47432 * 60.00089 * 5 4 2 7 7 C 1.52996 * 109.47494 * 300.00250 * 6 5 4 8 8 C 1.53003 * 109.47204 * 59.99355 * 7 6 5 9 9 H 1.08994 * 109.46637 * 60.00665 * 8 7 6 10 10 O 1.42896 * 109.47159 * 180.02562 * 8 7 6 11 11 C 1.42904 * 114.00313 * 270.00468 * 10 8 7 12 12 C 1.52997 * 109.47396 * 180.02562 * 11 10 8 13 13 N 1.46505 * 109.47212 * 64.99584 * 12 11 10 14 14 S 1.65596 * 119.99941 * 164.99768 * 13 12 11 15 15 O 1.42097 * 104.27711 * 181.07266 * 14 13 12 16 16 O 1.42100 * 104.27686 * 308.93150 * 14 13 12 17 17 C 1.81406 * 104.44797 * 65.00238 * 14 13 12 18 18 C 1.52999 * 109.47078 * 180.02562 * 17 14 13 19 19 C 1.50700 * 109.47373 * 180.02562 * 18 17 14 20 20 H 1.08007 * 119.99502 * 359.97438 * 19 18 17 21 21 C 1.37865 * 120.00347 * 179.97438 * 19 18 17 22 22 N 1.31513 * 120.00193 * 359.97438 * 21 19 18 23 23 Si 1.86807 * 120.00213 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.46747 * 89.99976 * 23 21 19 25 25 H 1.48492 * 109.47209 * 210.00275 * 23 21 19 26 26 H 1.48502 * 109.46794 * 330.00170 * 23 21 19 27 27 H 1.08997 * 109.47699 * 300.00633 * 1 2 3 28 28 H 1.09003 * 109.46786 * 60.00870 * 1 2 3 29 29 H 1.09003 * 109.46948 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46669 * 60.00005 * 4 2 1 31 31 H 1.09000 * 109.46876 * 300.00433 * 4 2 1 32 32 H 1.09003 * 109.47026 * 300.00069 * 5 4 2 33 33 H 1.09005 * 109.46645 * 180.02562 * 5 4 2 34 34 H 1.09003 * 109.47609 * 179.97438 * 6 5 4 35 35 H 1.09003 * 109.47031 * 59.99984 * 6 5 4 36 36 H 1.09003 * 109.46764 * 299.99897 * 7 6 5 37 37 H 1.08994 * 109.47597 * 179.97438 * 7 6 5 38 38 H 1.09001 * 109.46993 * 59.99365 * 11 10 8 39 39 H 1.09004 * 109.46505 * 300.00140 * 11 10 8 40 40 H 1.09002 * 109.47153 * 304.99576 * 12 11 10 41 41 H 1.09001 * 109.46832 * 184.99767 * 12 11 10 42 42 H 0.96997 * 119.99914 * 345.00649 * 13 12 11 43 43 H 1.09004 * 109.47006 * 299.99506 * 17 14 13 44 44 H 1.08991 * 109.46984 * 59.99873 * 17 14 13 45 45 H 1.09004 * 109.46523 * 299.99464 * 18 17 14 46 46 H 1.08996 * 109.47442 * 59.99434 * 18 17 14 47 47 H 0.97001 * 120.00561 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7214 -1.2491 5 6 3.5701 -0.7219 -1.2487 6 6 4.0795 -1.4433 0.0006 7 6 3.5695 -0.7221 1.2498 8 6 2.0394 -0.7215 1.2494 9 1 1.6758 -1.7490 1.2493 10 8 1.5631 -0.0474 2.4158 11 6 1.3688 -0.9034 3.5434 12 6 0.8598 -0.0794 4.7277 13 7 -0.4672 0.4570 4.4151 14 16 -1.4192 1.0681 5.6244 15 8 -2.6140 1.4628 4.9642 16 8 -1.4310 0.0461 6.6115 17 6 -0.5131 2.5211 6.2232 18 6 -1.3001 3.1813 7.3571 19 6 -0.5477 4.3887 7.8542 20 1 0.3976 4.6580 7.4063 21 6 -1.0659 5.1496 8.8805 22 7 -2.2171 4.8220 9.4254 23 14 -0.1328 6.6458 9.4971 24 1 -0.5551 7.8440 8.7281 25 1 -0.4267 6.8534 10.9378 26 1 1.3251 6.4295 9.3154 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 1.6768 -0.2076 -2.1392 31 1 1.6767 -1.7491 -1.2490 32 1 3.9337 0.3057 -1.2486 33 1 3.9334 -1.2355 -2.1389 34 1 5.1696 -1.4441 0.0007 35 1 3.7159 -2.4709 0.0005 36 1 3.9331 0.3055 1.2499 37 1 3.9320 -1.2362 2.1398 38 1 2.3149 -1.3754 3.8085 39 1 0.6367 -1.6717 3.2943 40 1 1.5481 0.7436 4.9204 41 1 0.7961 -0.7143 5.6114 42 1 -0.7882 0.4540 3.4997 43 1 0.4651 2.2127 6.5920 44 1 -0.3861 3.2319 5.4068 45 1 -2.2785 3.4897 6.9886 46 1 -1.4269 2.4703 8.1734 47 1 -2.5816 5.3570 10.1478 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000111329253.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:24 Heat of formation + Delta-G solvation = -160.252559 kcal Electronic energy + Delta-G solvation = -25338.963877 eV Core-core repulsion = 21647.394462 eV Total energy + Delta-G solvation = -3691.569414 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.80435 -37.26653 -36.51935 -35.40646 -34.78339 -33.85811 -32.89833 -31.12524 -30.39782 -28.50276 -26.42860 -25.56452 -23.12320 -22.38405 -21.64605 -21.58515 -20.17600 -18.93097 -17.48717 -17.08088 -16.59990 -16.29691 -15.70754 -15.35740 -15.25687 -14.79529 -14.70622 -14.54311 -14.38125 -13.88642 -13.57987 -13.42697 -13.26450 -12.88457 -12.54561 -12.47139 -12.26050 -12.15693 -11.78186 -11.69574 -11.54999 -11.49309 -11.46088 -11.21595 -11.15974 -11.05844 -10.93133 -10.88394 -10.64966 -10.55474 -10.39116 -10.34680 -9.76371 -9.62479 -9.44638 -8.97280 -8.47987 -6.10080 -4.15426 0.85733 3.17133 3.27861 3.33913 3.36641 3.37580 4.27848 4.29868 4.34429 4.40718 4.52468 4.67769 4.72081 4.79510 4.87113 4.92154 4.99605 5.07396 5.10511 5.12775 5.17086 5.25120 5.33473 5.39123 5.48500 5.54952 5.60747 5.63769 5.70404 5.71888 5.73649 5.76315 5.80284 5.89379 5.92451 6.02714 6.05627 6.13936 6.53804 7.02030 7.19730 7.33575 7.40009 7.83177 8.20592 8.88095 9.49209 11.00988 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.018202 B = 0.002606 C = 0.002460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.901565 B =10742.076058 C =11381.163325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.088 4.088 3 H 0.078 0.922 4 C -0.113 4.113 5 C -0.123 4.123 6 C -0.117 4.117 7 C -0.142 4.142 8 C 0.095 3.905 9 H 0.059 0.941 10 O -0.375 6.375 11 C 0.056 3.944 12 C 0.119 3.881 13 N -1.124 6.124 14 S 2.594 3.406 15 O -0.968 6.968 16 O -0.970 6.970 17 C -0.589 4.589 18 C 0.028 3.972 19 C -0.519 4.519 20 H 0.061 0.939 21 C 0.057 3.943 22 N -0.891 5.891 23 Si 0.900 3.100 24 H -0.279 1.279 25 H -0.285 1.285 26 H -0.273 1.273 27 H 0.066 0.934 28 H 0.054 0.946 29 H 0.050 0.950 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.064 0.936 35 H 0.061 0.939 36 H 0.072 0.928 37 H 0.063 0.937 38 H 0.061 0.939 39 H 0.057 0.943 40 H 0.073 0.927 41 H 0.093 0.907 42 H 0.415 0.585 43 H 0.118 0.882 44 H 0.121 0.879 45 H 0.033 0.967 46 H 0.033 0.967 47 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.257 -14.097 -20.718 27.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.107 4.107 3 H 0.097 0.903 4 C -0.150 4.150 5 C -0.160 4.160 6 C -0.155 4.155 7 C -0.180 4.180 8 C 0.037 3.963 9 H 0.077 0.923 10 O -0.294 6.294 11 C -0.022 4.022 12 C -0.007 4.007 13 N -0.882 5.882 14 S 2.692 3.308 15 O -0.959 6.959 16 O -0.960 6.960 17 C -0.723 4.723 18 C -0.011 4.011 19 C -0.559 4.559 20 H 0.080 0.920 21 C -0.145 4.145 22 N -0.529 5.529 23 Si 0.727 3.273 24 H -0.205 1.205 25 H -0.210 1.210 26 H -0.198 1.198 27 H 0.085 0.915 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.079 0.921 36 H 0.090 0.910 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.075 0.925 40 H 0.091 0.909 41 H 0.111 0.889 42 H 0.249 0.751 43 H 0.136 0.864 44 H 0.139 0.861 45 H 0.051 0.949 46 H 0.052 0.948 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 11.331 -14.272 -20.117 27.143 hybrid contribution 1.028 0.971 -0.038 1.415 sum 12.360 -13.301 -20.154 27.127 Atomic orbital electron populations 1.21798 0.94514 1.01723 1.02465 1.21202 0.96323 1.00349 0.92801 0.90311 1.21592 0.95410 1.00708 0.97319 1.21576 0.95707 1.01022 0.97720 1.21491 1.00435 0.99251 0.94286 1.22053 0.95993 1.01881 0.98097 1.22125 0.92908 0.95692 0.85528 0.92312 1.87951 1.86418 1.35168 1.19839 1.22730 0.99774 0.93024 0.86669 1.21305 0.83946 0.98500 0.96986 1.55688 1.29207 1.78756 1.24532 1.05479 0.74756 0.77044 0.73560 1.93549 1.43920 1.84552 1.73832 1.93531 1.86588 1.55348 1.60488 1.30435 1.13381 1.17182 1.11264 1.18962 0.95173 0.96686 0.90325 1.21014 1.06496 1.10173 1.18192 0.92048 1.25068 0.95089 0.98009 0.96363 1.69955 1.18217 1.39443 1.25301 0.86470 0.80063 0.82697 0.78053 1.20484 1.21036 1.19767 0.91491 0.92665 0.93057 0.91414 0.91930 0.91751 0.91933 0.91743 0.92052 0.90956 0.91796 0.92083 0.92472 0.90853 0.88903 0.75147 0.86377 0.86051 0.94852 0.94839 0.92558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.05 37.16 0.34 -0.88 16 2 C -0.09 -0.69 2.46 -90.62 -0.22 -0.92 16 3 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 4 C -0.11 -0.71 5.20 -26.73 -0.14 -0.84 16 5 C -0.12 -0.71 5.92 -26.74 -0.16 -0.87 16 6 C -0.12 -0.70 5.92 -26.74 -0.16 -0.86 16 7 C -0.14 -1.04 5.54 -26.73 -0.15 -1.19 16 8 C 0.10 0.78 2.04 -26.73 -0.05 0.72 16 9 H 0.06 0.45 7.79 -51.93 -0.40 0.05 16 10 O -0.37 -3.78 9.11 -35.23 -0.32 -4.10 16 11 C 0.06 0.51 5.94 37.16 0.22 0.73 16 12 C 0.12 1.31 6.52 -4.04 -0.03 1.29 16 13 N -1.12 -14.91 5.85 -10.61 -0.06 -14.97 16 14 S 2.59 46.62 5.46 -107.50 -0.59 46.03 16 15 O -0.97 -20.40 18.08 -57.54 -1.04 -21.44 16 16 O -0.97 -20.01 17.50 -57.54 -1.01 -21.01 16 17 C -0.59 -11.37 6.01 37.16 0.22 -11.15 16 18 C 0.03 0.71 4.98 -27.88 -0.14 0.57 16 19 C -0.52 -14.49 9.11 -34.44 -0.31 -14.80 16 20 H 0.06 1.62 7.74 -52.48 -0.41 1.22 16 21 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 22 N -0.89 -26.71 13.29 55.43 0.74 -25.97 16 23 Si 0.90 21.37 29.54 -169.99 -5.02 16.35 16 24 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 25 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 26 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 27 H 0.07 0.64 7.68 -51.93 -0.40 0.24 16 28 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 34 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.06 0.45 7.87 -51.93 -0.41 0.04 16 38 H 0.06 0.44 7.87 -51.93 -0.41 0.04 16 39 H 0.06 0.49 8.09 -51.93 -0.42 0.07 16 40 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.09 0.99 7.69 -51.93 -0.40 0.59 16 42 H 0.41 5.00 8.47 -34.47 -0.29 4.71 16 43 H 0.12 2.02 8.14 -51.92 -0.42 1.60 16 44 H 0.12 2.15 8.14 -51.93 -0.42 1.73 16 45 H 0.03 0.91 8.14 -51.93 -0.42 0.48 16 46 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 47 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 387.94 15.07 5.85 5.85 Total: -1.00 -34.77 387.94 -10.75 -45.52 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -8.61 Total: 0.41 kcal Atomic # 6 Polarization: -25.99 SS G_CDS: -0.68 Total: -26.67 kcal Atomic # 7 Polarization: -41.62 SS G_CDS: 0.67 Total: -40.94 kcal Atomic # 8 Polarization: -44.18 SS G_CDS: -2.37 Total: -46.55 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 16 Polarization: 46.62 SS G_CDS: -0.59 Total: 46.03 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -34.77 -10.75 -45.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111329253.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.733 kcal (2) G-P(sol) polarization free energy of solvation -34.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds