Wall clock time and date at job start Tue Mar 31 2020 13:21:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.47695 * 2 1 4 4 C 1.53005 * 109.46942 * 119.99695 * 2 1 3 5 5 C 1.53005 * 109.47204 * 179.97438 * 4 2 1 6 6 C 1.52998 * 109.47147 * 300.00519 * 5 4 2 7 7 C 1.52999 * 109.47227 * 59.99764 * 6 5 4 8 8 C 1.52996 * 109.47234 * 299.99580 * 7 6 5 9 9 H 1.09000 * 109.47516 * 179.97438 * 8 7 6 10 10 O 1.42898 * 109.47484 * 300.00596 * 8 7 6 11 11 C 1.42905 * 113.99437 * 269.99806 * 10 8 7 12 12 C 1.52999 * 109.46761 * 179.97438 * 11 10 8 13 13 N 1.46498 * 109.47224 * 64.99824 * 12 11 10 14 14 S 1.65606 * 119.99850 * 164.99972 * 13 12 11 15 15 O 1.42094 * 104.27817 * 308.92879 * 14 13 12 16 16 O 1.42106 * 104.27580 * 181.07110 * 14 13 12 17 17 C 1.81396 * 104.45103 * 65.00095 * 14 13 12 18 18 C 1.52997 * 109.47360 * 179.97438 * 17 14 13 19 19 C 1.50701 * 109.47212 * 179.97438 * 18 17 14 20 20 H 1.07998 * 120.00129 * 0.02562 * 19 18 17 21 21 C 1.37880 * 119.99861 * 179.97438 * 19 18 17 22 22 N 1.31512 * 119.99594 * 180.02562 * 21 19 18 23 23 Si 1.86797 * 119.99875 * 0.02562 * 21 19 18 24 24 H 1.48504 * 109.47061 * 90.00257 * 23 21 19 25 25 H 1.48497 * 109.46906 * 209.99430 * 23 21 19 26 26 H 1.48498 * 109.47403 * 329.99876 * 23 21 19 27 27 H 1.08994 * 109.47193 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47207 * 300.00368 * 1 2 3 29 29 H 1.09004 * 109.46703 * 60.00124 * 1 2 3 30 30 H 1.08996 * 109.47779 * 299.99869 * 4 2 1 31 31 H 1.09003 * 109.47110 * 60.00222 * 4 2 1 32 32 H 1.09003 * 109.46663 * 60.00245 * 5 4 2 33 33 H 1.08990 * 109.47170 * 180.02562 * 5 4 2 34 34 H 1.09005 * 109.46885 * 179.97438 * 6 5 4 35 35 H 1.08994 * 109.47183 * 299.99683 * 6 5 4 36 36 H 1.09002 * 109.46853 * 180.02562 * 7 6 5 37 37 H 1.09006 * 109.47120 * 60.00303 * 7 6 5 38 38 H 1.08998 * 109.47114 * 60.00071 * 11 10 8 39 39 H 1.09001 * 109.47095 * 299.99482 * 11 10 8 40 40 H 1.08999 * 109.46956 * 304.99804 * 12 11 10 41 41 H 1.09006 * 109.47191 * 185.00139 * 12 11 10 42 42 H 0.96995 * 119.99965 * 345.00149 * 13 12 11 43 43 H 1.09002 * 109.47134 * 59.99751 * 17 14 13 44 44 H 1.08998 * 109.46953 * 300.00489 * 17 14 13 45 45 H 1.09002 * 109.47153 * 59.99820 * 18 17 14 46 46 H 1.09001 * 109.46832 * 300.00011 * 18 17 14 47 47 H 0.97002 * 119.99739 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5700 -0.7218 1.2491 6 6 4.0795 -1.4434 -0.0002 7 6 3.5695 -0.7221 -1.2494 8 6 2.0396 -0.7217 -1.2492 9 1 1.6762 -0.2075 -2.1390 10 8 1.5627 -2.0688 -1.2489 11 6 1.3686 -2.6168 -2.5543 12 6 0.8603 -4.0548 -2.4331 13 7 -0.4666 -4.0531 -1.8122 14 16 -1.4179 -5.4065 -1.8879 15 8 -1.4296 -5.7500 -3.2666 16 8 -2.6129 -5.0329 -1.2157 17 6 -0.5111 -6.6514 -0.9295 18 6 -1.2980 -7.9635 -0.9239 19 6 -0.5444 -8.9979 -0.1282 20 1 0.4011 -8.7446 0.3283 21 6 -1.0624 -10.2673 0.0179 22 7 -0.4049 -11.1697 0.7128 23 14 -2.6980 -10.7051 -0.7710 24 1 -2.4626 -11.2277 -2.1410 25 1 -3.3788 -11.7428 0.0443 26 1 -3.5528 -9.4929 -0.8437 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.6767 -0.2074 2.1393 31 1 1.6766 -1.7489 1.2494 32 1 3.9336 0.3058 1.2488 33 1 3.9332 -1.2360 2.1388 34 1 5.1695 -1.4434 -0.0005 35 1 3.7158 -2.4709 0.0000 36 1 3.9322 -1.2365 -2.1394 37 1 3.9333 0.3054 -1.2496 38 1 2.3148 -2.6107 -3.0953 39 1 0.6368 -2.0168 -3.0951 40 1 1.5490 -4.6329 -1.8170 41 1 0.7968 -4.5026 -3.4250 42 1 -0.7879 -3.2593 -1.3568 43 1 -0.3841 -6.3000 0.0945 44 1 0.4672 -6.8158 -1.3810 45 1 -1.4254 -8.3151 -1.9478 46 1 -2.2761 -7.7986 -0.4720 47 1 -0.7691 -12.0629 0.8153 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000111329256.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:26 Heat of formation + Delta-G solvation = -178.280412 kcal Electronic energy + Delta-G solvation = -25812.305315 eV Core-core repulsion = 22119.954154 eV Total energy + Delta-G solvation = -3692.351161 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.49500 -38.19857 -37.65676 -37.02272 -35.88413 -35.58851 -33.46326 -33.44077 -31.06126 -29.41829 -27.87198 -26.99180 -23.71413 -23.30354 -23.16286 -22.10233 -20.53402 -20.31102 -19.38454 -18.47362 -17.71577 -17.21543 -16.92425 -16.60615 -16.45266 -16.34100 -15.94369 -15.30734 -15.11693 -15.01183 -14.81912 -14.33700 -14.17795 -14.03877 -13.80203 -13.66580 -13.29619 -13.21943 -13.11857 -13.05669 -12.94151 -12.91376 -12.69669 -12.41084 -12.34026 -12.22966 -12.04766 -11.93737 -11.71482 -11.68409 -11.34462 -11.29898 -11.23379 -10.83782 -10.79104 -10.33514 -10.22624 -8.35991 -6.41739 -0.67919 1.32702 1.34492 1.44963 1.83198 2.30300 2.77173 2.77514 2.97994 3.27279 3.75703 3.86147 3.89293 3.94111 4.03932 4.08936 4.25363 4.30167 4.30913 4.46493 4.50019 4.58048 4.59876 4.61392 4.65721 4.67866 4.75954 4.86397 4.97208 5.00839 5.05065 5.09024 5.12174 5.14417 5.16224 5.27036 5.36258 5.40243 5.47225 5.48223 5.50238 5.66929 6.14551 6.17601 6.42527 6.64346 7.22600 8.79661 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.017767 B = 0.003026 C = 0.002834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.568906 B = 9249.417837 C = 9878.391848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.084 4.084 3 H 0.091 0.909 4 C -0.112 4.112 5 C -0.117 4.117 6 C -0.116 4.116 7 C -0.138 4.138 8 C 0.090 3.910 9 H 0.071 0.929 10 O -0.385 6.385 11 C 0.057 3.943 12 C 0.106 3.894 13 N -1.105 6.105 14 S 2.626 3.374 15 O -0.990 6.990 16 O -0.996 6.996 17 C -0.590 4.590 18 C -0.018 4.018 19 C -0.528 4.528 20 H 0.048 0.952 21 C 0.012 3.988 22 N -0.941 5.941 23 Si 0.927 3.073 24 H -0.259 1.259 25 H -0.275 1.275 26 H -0.250 1.250 27 H 0.049 0.951 28 H 0.056 0.944 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.052 0.948 32 H 0.068 0.932 33 H 0.055 0.945 34 H 0.062 0.938 35 H 0.052 0.948 36 H 0.067 0.933 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.065 0.935 40 H 0.080 0.920 41 H 0.099 0.901 42 H 0.424 0.576 43 H 0.136 0.864 44 H 0.140 0.860 45 H 0.033 0.967 46 H 0.031 0.969 47 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.044 27.063 -5.317 28.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.103 4.103 3 H 0.109 0.891 4 C -0.150 4.150 5 C -0.155 4.155 6 C -0.153 4.153 7 C -0.175 4.175 8 C 0.033 3.967 9 H 0.089 0.911 10 O -0.305 6.305 11 C -0.021 4.021 12 C -0.019 4.019 13 N -0.867 5.867 14 S 2.721 3.279 15 O -0.980 6.980 16 O -0.986 6.986 17 C -0.721 4.721 18 C -0.057 4.057 19 C -0.567 4.567 20 H 0.066 0.934 21 C -0.186 4.186 22 N -0.580 5.580 23 Si 0.749 3.251 24 H -0.184 1.184 25 H -0.200 1.200 26 H -0.173 1.173 27 H 0.069 0.931 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.070 0.930 32 H 0.087 0.913 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.071 0.929 36 H 0.085 0.915 37 H 0.099 0.901 38 H 0.100 0.900 39 H 0.083 0.917 40 H 0.099 0.901 41 H 0.117 0.883 42 H 0.261 0.739 43 H 0.155 0.845 44 H 0.159 0.841 45 H 0.052 0.948 46 H 0.049 0.951 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 7.250 26.584 -5.661 28.131 hybrid contribution -0.024 -0.587 0.464 0.748 sum 7.226 25.998 -5.197 27.479 Atomic orbital electron populations 1.21795 0.95045 1.01876 1.01820 1.21247 0.95868 0.99133 0.94023 0.89080 1.21506 0.95659 1.00556 0.97260 1.21514 0.95421 1.00792 0.97745 1.21409 0.99829 0.99511 0.94562 1.22014 0.95409 1.01697 0.98396 1.22220 0.93441 0.82714 0.98350 0.91136 1.87949 1.86613 1.28468 1.27428 1.22736 1.00909 0.92827 0.85639 1.21635 0.82487 0.98442 0.99374 1.55203 1.29970 1.29777 1.71763 1.04303 0.74093 0.74980 0.74555 1.93511 1.86933 1.84579 1.32930 1.93516 1.45838 1.82014 1.77243 1.30293 1.13936 1.12162 1.15694 1.19376 0.96069 0.92266 0.97946 1.21187 1.07081 0.95683 1.32700 0.93378 1.25892 1.01125 0.96267 0.95311 1.70014 1.40906 1.05089 1.42028 0.86001 0.80189 0.79365 0.79535 1.18377 1.19981 1.17317 0.93146 0.92474 0.92302 0.92091 0.92962 0.91290 0.92607 0.91953 0.92893 0.91476 0.90051 0.90000 0.91713 0.90142 0.88319 0.73947 0.84548 0.84135 0.94846 0.95065 0.92134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 9.05 71.98 0.65 -1.47 16 2 C -0.08 -1.11 2.55 -10.79 -0.03 -1.14 16 3 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 4 C -0.11 -1.76 5.06 30.60 0.15 -1.60 16 5 C -0.12 -1.65 5.92 30.60 0.18 -1.47 16 6 C -0.12 -1.67 5.78 30.59 0.18 -1.49 16 7 C -0.14 -1.60 5.63 30.59 0.17 -1.43 16 8 C 0.09 1.18 2.35 30.59 0.07 1.25 16 9 H 0.07 0.76 7.79 -2.39 -0.02 0.74 16 10 O -0.38 -6.44 7.76 -148.98 -1.16 -7.60 16 11 C 0.06 0.82 5.94 71.98 0.43 1.24 16 12 C 0.11 1.98 6.52 86.38 0.56 2.54 16 13 N -1.10 -25.57 5.85 -187.49 -1.10 -26.67 16 14 S 2.63 85.11 5.46 -56.49 -0.31 84.80 16 15 O -0.99 -36.68 17.50 -127.65 -2.23 -38.91 16 16 O -1.00 -38.33 18.08 -127.65 -2.31 -40.64 16 17 C -0.59 -21.19 6.01 71.98 0.43 -20.75 16 18 C -0.02 -0.83 4.05 29.85 0.12 -0.71 16 19 C -0.53 -30.08 9.66 25.60 0.25 -29.83 16 20 H 0.05 2.93 7.99 -2.91 -0.02 2.91 16 21 C 0.01 0.73 5.47 84.66 0.46 1.19 16 22 N -0.94 -58.24 13.96 21.45 0.30 -57.94 16 23 Si 0.93 44.12 27.47 68.60 1.88 46.00 16 24 H -0.26 -11.76 7.11 99.48 0.71 -11.06 16 25 H -0.27 -12.64 7.11 99.48 0.71 -11.94 16 26 H -0.25 -11.30 6.54 99.48 0.65 -10.65 16 27 H 0.05 0.88 7.68 -2.39 -0.02 0.86 16 28 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 30 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.05 1.05 7.68 -2.39 -0.02 1.04 16 32 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 35 H 0.05 0.98 7.68 -2.39 -0.02 0.96 16 36 H 0.07 0.73 7.87 -2.39 -0.02 0.72 16 37 H 0.08 0.74 8.14 -2.38 -0.02 0.73 16 38 H 0.08 0.86 7.87 -2.39 -0.02 0.85 16 39 H 0.06 0.84 8.09 -2.39 -0.02 0.82 16 40 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.10 1.75 7.69 -2.38 -0.02 1.73 16 42 H 0.42 8.83 8.47 -96.75 -0.82 8.01 16 43 H 0.14 4.60 8.14 -2.39 -0.02 4.58 16 44 H 0.14 4.49 8.14 -2.39 -0.02 4.47 16 45 H 0.03 1.53 7.57 -2.39 -0.02 1.51 16 46 H 0.03 1.47 7.20 -2.39 -0.02 1.45 16 47 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 Total: -1.00 -73.85 382.26 -1.23 -75.08 By element: Atomic # 1 Polarization: 19.50 SS G_CDS: 0.05 Total: 19.55 kcal Atomic # 6 Polarization: -57.31 SS G_CDS: 3.63 Total: -53.68 kcal Atomic # 7 Polarization: -83.80 SS G_CDS: -0.80 Total: -84.60 kcal Atomic # 8 Polarization: -81.46 SS G_CDS: -5.70 Total: -87.15 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 1.88 Total: 46.00 kcal Atomic # 16 Polarization: 85.11 SS G_CDS: -0.31 Total: 84.80 kcal Total: -73.85 -1.23 -75.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111329256.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.199 kcal (2) G-P(sol) polarization free energy of solvation -73.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds