Wall clock time and date at job start Tue Mar 31 2020 13:14:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47043 * 2 1 4 4 O 1.42896 * 109.46920 * 180.02562 * 3 2 1 5 5 C 1.42903 * 113.99553 * 180.02562 * 4 3 2 6 6 H 1.09003 * 108.45191 * 32.31052 * 5 4 3 7 7 C 1.52569 * 108.51293 * 274.75920 * 5 4 3 8 8 C 1.50884 * 109.35769 * 153.73409 * 7 5 4 9 9 C 1.54300 * 110.23170 * 91.80371 * 8 7 5 10 10 N 1.47608 * 111.94094 * 319.69721 * 9 8 7 11 11 S 1.65606 * 118.63793 * 137.78183 * 10 9 8 12 12 O 1.42100 * 104.27450 * 153.66277 * 11 10 9 13 13 O 1.42093 * 104.28025 * 25.80192 * 11 10 9 14 14 C 1.81403 * 104.44724 * 269.72935 * 11 10 9 15 15 C 1.53001 * 109.47153 * 180.02562 * 14 11 10 16 16 C 1.50694 * 109.47168 * 180.02562 * 15 14 11 17 17 H 1.08000 * 120.00563 * 0.02562 * 16 15 14 18 18 C 1.37885 * 119.99902 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99913 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99766 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46985 * 179.97438 * 20 18 16 22 22 H 1.48494 * 109.47276 * 299.99832 * 20 18 16 23 23 H 1.48498 * 109.47150 * 60.00043 * 20 18 16 24 24 C 1.44571 * 122.71624 * 317.50095 * 10 9 8 25 25 C 1.47092 * 108.51069 * 149.99811 * 5 4 3 26 26 H 1.09001 * 109.47056 * 299.99862 * 1 2 3 27 27 H 1.08996 * 109.47486 * 59.99826 * 1 2 3 28 28 H 1.08998 * 109.46901 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47056 * 240.00138 * 2 1 3 30 30 H 1.08996 * 109.47486 * 120.00174 * 2 1 3 31 31 H 1.09001 * 109.47082 * 60.00154 * 3 2 1 32 32 H 1.09006 * 109.47160 * 300.00303 * 3 2 1 33 33 H 1.08997 * 109.49001 * 273.70423 * 7 5 4 34 34 H 1.08996 * 109.48500 * 33.77222 * 7 5 4 35 35 H 1.08999 * 109.36407 * 212.08205 * 8 7 5 36 36 H 1.09001 * 109.36541 * 331.70285 * 8 7 5 37 37 H 1.09001 * 109.13734 * 199.01688 * 9 8 7 38 38 H 1.08998 * 108.95941 * 80.26370 * 9 8 7 39 39 H 1.09002 * 109.46959 * 60.00458 * 14 11 10 40 40 H 1.08998 * 109.47334 * 299.99936 * 14 11 10 41 41 H 1.09007 * 109.46922 * 59.99828 * 15 14 11 42 42 H 1.09003 * 109.46836 * 300.00583 * 15 14 11 43 43 H 0.97001 * 119.99646 * 179.97438 * 19 18 16 44 44 H 1.08996 * 109.45153 * 211.02542 * 24 10 9 45 45 H 1.09004 * 109.45252 * 330.97004 * 24 10 9 46 46 H 1.09002 * 109.33226 * 63.78884 * 25 5 4 47 47 H 1.09001 * 109.32873 * 304.31269 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4425 -0.0006 5 6 4.0501 2.7480 -0.0001 6 1 3.3923 3.4183 0.5533 7 6 4.1369 3.2403 -1.4416 8 6 4.1150 4.7489 -1.4571 9 6 5.5541 5.3039 -1.4136 10 7 6.4135 4.5367 -0.4908 11 16 7.9576 4.1702 -0.9639 12 8 8.6743 4.0326 0.2554 13 8 8.2891 5.1887 -1.8976 14 6 7.8068 2.5665 -1.7981 15 6 9.1844 2.1142 -2.2868 16 6 9.0590 0.7823 -2.9803 17 1 8.0933 0.3060 -3.0647 18 6 10.1772 0.1715 -3.5074 19 7 11.3531 0.7516 -3.4052 20 14 10.0219 -1.4799 -4.3664 21 1 11.3589 -1.9188 -4.8408 22 1 9.4795 -2.4834 -3.4157 23 1 9.1037 -1.3501 -5.5263 24 6 5.9648 4.0971 0.8113 25 6 5.3439 2.6830 0.6968 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6766 1.9564 -0.8900 33 1 5.0638 2.8853 -1.8919 34 1 3.2875 2.8584 -2.0079 35 1 3.6217 5.0938 -2.3658 36 1 3.5642 5.1113 -0.5891 37 1 5.5262 6.3440 -1.0890 38 1 5.9814 5.2587 -2.4153 39 1 7.1323 2.6616 -2.6491 40 1 7.4095 1.8297 -1.1000 41 1 9.8586 2.0191 -1.4356 42 1 9.5822 2.8510 -2.9847 43 1 12.1398 0.3217 -3.7756 44 1 6.8123 4.0670 1.4961 45 1 5.2160 4.7922 1.1910 46 1 6.0214 2.0354 0.1402 47 1 5.1955 2.2722 1.6955 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000111342127.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:14:08 Heat of formation + Delta-G solvation = -140.191100 kcal Electronic energy + Delta-G solvation = -26521.269002 eV Core-core repulsion = 22830.569518 eV Total energy + Delta-G solvation = -3690.699484 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.68108 -37.30030 -36.69732 -35.44109 -34.19376 -33.85990 -32.86008 -31.94132 -31.11682 -26.65765 -26.17662 -25.58332 -24.74570 -22.05713 -21.70313 -20.78035 -20.55519 -18.45267 -17.70470 -17.11417 -16.50425 -16.19040 -15.97638 -15.58345 -15.28603 -14.73560 -14.69356 -14.53130 -14.21747 -13.62198 -13.44941 -13.42404 -12.95733 -12.72621 -12.58530 -12.43313 -12.16073 -12.04693 -11.76854 -11.73501 -11.60534 -11.54827 -11.34837 -11.19755 -11.04779 -10.99224 -10.93897 -10.84024 -10.74090 -10.58039 -10.37604 -10.28492 -9.72228 -9.61683 -9.30274 -8.75979 -8.47051 -6.09458 -4.14666 0.77628 2.99960 3.29788 3.34249 3.36536 3.45716 4.29305 4.39482 4.42041 4.55396 4.67290 4.71869 4.75470 4.91352 4.94556 4.97724 5.03011 5.13181 5.19625 5.20565 5.25613 5.28210 5.40128 5.45729 5.49912 5.53653 5.63357 5.71317 5.71492 5.77861 5.82823 5.86843 5.96639 5.97543 6.02421 6.11582 6.15718 6.21421 6.57368 6.78229 7.16407 7.32803 7.38722 7.83866 8.20930 8.88615 9.49904 11.01601 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.009848 B = 0.004521 C = 0.003364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2842.648667 B = 6191.458950 C = 8322.240433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.125 4.125 3 C 0.062 3.938 4 O -0.385 6.385 5 C 0.103 3.897 6 H 0.052 0.948 7 C -0.145 4.145 8 C -0.128 4.128 9 C 0.122 3.878 10 N -1.000 6.000 11 S 2.584 3.416 12 O -0.964 6.964 13 O -0.965 6.965 14 C -0.591 4.591 15 C 0.030 3.970 16 C -0.519 4.519 17 H 0.061 0.939 18 C 0.058 3.942 19 N -0.891 5.891 20 Si 0.899 3.101 21 H -0.285 1.285 22 H -0.275 1.275 23 H -0.276 1.276 24 C 0.122 3.878 25 C -0.152 4.152 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.060 0.940 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.044 0.956 32 H 0.046 0.954 33 H 0.078 0.922 34 H 0.069 0.931 35 H 0.077 0.923 36 H 0.065 0.935 37 H 0.067 0.933 38 H 0.087 0.913 39 H 0.118 0.882 40 H 0.121 0.879 41 H 0.033 0.967 42 H 0.032 0.968 43 H 0.265 0.735 44 H 0.101 0.899 45 H 0.079 0.921 46 H 0.079 0.921 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.365 5.607 7.713 23.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.163 4.163 3 C -0.015 4.015 4 O -0.305 6.305 5 C 0.046 3.954 6 H 0.070 0.930 7 C -0.182 4.182 8 C -0.167 4.167 9 C -0.003 4.003 10 N -0.835 5.835 11 S 2.683 3.317 12 O -0.954 6.954 13 O -0.955 6.955 14 C -0.724 4.724 15 C -0.009 4.009 16 C -0.558 4.558 17 H 0.079 0.921 18 C -0.144 4.144 19 N -0.530 5.530 20 Si 0.727 3.273 21 H -0.211 1.211 22 H -0.201 1.201 23 H -0.201 1.201 24 C -0.005 4.005 25 C -0.191 4.191 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.079 0.921 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.097 0.903 34 H 0.088 0.912 35 H 0.096 0.904 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.105 0.895 39 H 0.137 0.863 40 H 0.139 0.861 41 H 0.051 0.949 42 H 0.050 0.950 43 H 0.075 0.925 44 H 0.120 0.880 45 H 0.098 0.902 46 H 0.098 0.902 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -20.346 6.041 7.868 22.635 hybrid contribution -0.691 -1.260 -0.754 1.623 sum -21.037 4.781 7.114 22.716 Atomic orbital electron populations 1.21694 0.94988 1.02146 1.01837 1.21470 0.95458 0.95866 1.03499 1.22538 0.81670 0.97569 0.99710 1.88002 1.18996 1.28339 1.95141 1.20993 0.94875 0.84212 0.95310 0.93033 1.21666 1.03789 0.95480 0.97304 1.21756 0.96540 0.95721 1.02678 1.21696 0.90572 0.94672 0.93364 1.57417 1.32997 1.68867 1.24231 1.05893 0.72702 0.78119 0.74986 1.93521 1.69787 1.87906 1.44180 1.93533 1.81673 1.55252 1.65084 1.30595 1.10584 1.18833 1.12387 1.18945 0.86128 0.98421 0.97419 1.20968 0.94295 1.03652 1.36899 0.92078 1.25059 0.95237 0.98068 0.96066 1.69948 0.98791 1.38903 1.45317 0.86540 0.77288 0.83614 0.79899 1.21091 1.20054 1.20108 1.21219 1.01024 0.93699 0.84534 1.21526 0.96787 0.98746 1.02079 0.92685 0.92605 0.92102 0.91024 0.91167 0.93747 0.93560 0.90322 0.91222 0.90439 0.91632 0.91508 0.89501 0.86346 0.86068 0.94903 0.94970 0.92510 0.88044 0.90229 0.90220 0.89662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.91 37.16 0.37 -0.61 16 2 C -0.13 -1.08 6.30 -26.73 -0.17 -1.25 16 3 C 0.06 0.58 5.63 37.16 0.21 0.79 16 4 O -0.39 -4.70 9.85 -35.23 -0.35 -5.04 16 5 C 0.10 1.11 2.08 -29.79 -0.06 1.05 16 6 H 0.05 0.47 6.96 -51.93 -0.36 0.10 16 7 C -0.14 -1.53 5.11 -28.01 -0.14 -1.68 16 8 C -0.13 -1.12 5.71 -27.11 -0.15 -1.28 16 9 C 0.12 1.36 5.93 -2.75 -0.02 1.34 16 10 N -1.00 -13.35 2.46 -113.10 -0.28 -13.63 16 11 S 2.58 47.14 5.31 -107.50 -0.57 46.57 16 12 O -0.96 -19.95 16.42 -57.54 -0.94 -20.89 16 13 O -0.97 -20.06 16.69 -57.54 -0.96 -21.02 16 14 C -0.59 -11.55 5.54 37.16 0.21 -11.34 16 15 C 0.03 0.77 4.98 -27.89 -0.14 0.63 16 16 C -0.52 -14.49 9.11 -34.44 -0.31 -14.81 16 17 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 18 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 19 N -0.89 -26.74 13.29 55.43 0.74 -26.01 16 20 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 21 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 23 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 24 C 0.12 1.39 5.60 -4.09 -0.02 1.36 16 25 C -0.15 -1.75 5.29 -28.58 -0.15 -1.91 16 26 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.04 0.36 8.06 -51.93 -0.42 -0.05 16 32 H 0.05 0.40 7.35 -51.93 -0.38 0.02 16 33 H 0.08 0.97 6.44 -51.93 -0.33 0.64 16 34 H 0.07 0.70 7.18 -51.93 -0.37 0.33 16 35 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.49 7.31 -51.93 -0.38 0.11 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.09 1.03 7.19 -51.93 -0.37 0.66 16 39 H 0.12 2.10 7.56 -51.92 -0.39 1.70 16 40 H 0.12 2.19 6.24 -51.93 -0.32 1.87 16 41 H 0.03 0.89 8.14 -51.92 -0.42 0.47 16 42 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 44 H 0.10 1.25 6.75 -51.93 -0.35 0.90 16 45 H 0.08 0.70 8.06 -51.93 -0.42 0.28 16 46 H 0.08 1.07 6.06 -51.93 -0.31 0.75 16 47 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 374.16 15.07 5.64 5.64 Total: -1.00 -34.40 374.16 -10.42 -44.83 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: -8.19 Total: -0.76 kcal Atomic # 6 Polarization: -25.66 SS G_CDS: -0.49 Total: -26.15 kcal Atomic # 7 Polarization: -40.09 SS G_CDS: 0.46 Total: -39.63 kcal Atomic # 8 Polarization: -44.71 SS G_CDS: -2.25 Total: -46.96 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: 47.14 SS G_CDS: -0.57 Total: 46.57 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.40 -10.42 -44.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111342127.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.365 kcal (2) G-P(sol) polarization free energy of solvation -34.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds