Wall clock time and date at job start Tue Mar 31 2020 13:14:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47043 * 2 1 4 4 O 1.42896 * 109.46920 * 180.02562 * 3 2 1 5 5 C 1.42903 * 113.99553 * 180.02562 * 4 3 2 6 6 H 1.09003 * 108.45191 * 32.31052 * 5 4 3 7 7 C 1.52569 * 108.51293 * 274.75920 * 5 4 3 8 8 C 1.50884 * 109.35769 * 153.73409 * 7 5 4 9 9 C 1.54300 * 110.23170 * 91.80371 * 8 7 5 10 10 N 1.47608 * 111.94094 * 319.69721 * 9 8 7 11 11 S 1.65606 * 118.63793 * 137.78183 * 10 9 8 12 12 O 1.42100 * 104.27450 * 153.66277 * 11 10 9 13 13 O 1.42093 * 104.28025 * 25.80192 * 11 10 9 14 14 C 1.81403 * 104.44724 * 269.72935 * 11 10 9 15 15 C 1.53001 * 109.47153 * 180.02562 * 14 11 10 16 16 C 1.50694 * 109.47168 * 180.02562 * 15 14 11 17 17 H 1.08000 * 120.00563 * 0.02562 * 16 15 14 18 18 C 1.37885 * 119.99902 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99913 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99766 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46985 * 179.97438 * 20 18 16 22 22 H 1.48494 * 109.47276 * 299.99832 * 20 18 16 23 23 H 1.48498 * 109.47150 * 60.00043 * 20 18 16 24 24 C 1.44571 * 122.71624 * 317.50095 * 10 9 8 25 25 C 1.47092 * 108.51069 * 149.99811 * 5 4 3 26 26 H 1.09001 * 109.47056 * 299.99862 * 1 2 3 27 27 H 1.08996 * 109.47486 * 59.99826 * 1 2 3 28 28 H 1.08998 * 109.46901 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47056 * 240.00138 * 2 1 3 30 30 H 1.08996 * 109.47486 * 120.00174 * 2 1 3 31 31 H 1.09001 * 109.47082 * 60.00154 * 3 2 1 32 32 H 1.09006 * 109.47160 * 300.00303 * 3 2 1 33 33 H 1.08997 * 109.49001 * 273.70423 * 7 5 4 34 34 H 1.08996 * 109.48500 * 33.77222 * 7 5 4 35 35 H 1.08999 * 109.36407 * 212.08205 * 8 7 5 36 36 H 1.09001 * 109.36541 * 331.70285 * 8 7 5 37 37 H 1.09001 * 109.13734 * 199.01688 * 9 8 7 38 38 H 1.08998 * 108.95941 * 80.26370 * 9 8 7 39 39 H 1.09002 * 109.46959 * 60.00458 * 14 11 10 40 40 H 1.08998 * 109.47334 * 299.99936 * 14 11 10 41 41 H 1.09007 * 109.46922 * 59.99828 * 15 14 11 42 42 H 1.09003 * 109.46836 * 300.00583 * 15 14 11 43 43 H 0.97001 * 119.99646 * 179.97438 * 19 18 16 44 44 H 1.08996 * 109.45153 * 211.02542 * 24 10 9 45 45 H 1.09004 * 109.45252 * 330.97004 * 24 10 9 46 46 H 1.09002 * 109.33226 * 63.78884 * 25 5 4 47 47 H 1.09001 * 109.32873 * 304.31269 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4425 -0.0006 5 6 4.0501 2.7480 -0.0001 6 1 3.3923 3.4183 0.5533 7 6 4.1369 3.2403 -1.4416 8 6 4.1150 4.7489 -1.4571 9 6 5.5541 5.3039 -1.4136 10 7 6.4135 4.5367 -0.4908 11 16 7.9576 4.1702 -0.9639 12 8 8.6743 4.0326 0.2554 13 8 8.2891 5.1887 -1.8976 14 6 7.8068 2.5665 -1.7981 15 6 9.1844 2.1142 -2.2868 16 6 9.0590 0.7823 -2.9803 17 1 8.0933 0.3060 -3.0647 18 6 10.1772 0.1715 -3.5074 19 7 11.3531 0.7516 -3.4052 20 14 10.0219 -1.4799 -4.3664 21 1 11.3589 -1.9188 -4.8408 22 1 9.4795 -2.4834 -3.4157 23 1 9.1037 -1.3501 -5.5263 24 6 5.9648 4.0971 0.8113 25 6 5.3439 2.6830 0.6968 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6766 1.9564 -0.8900 33 1 5.0638 2.8853 -1.8919 34 1 3.2875 2.8584 -2.0079 35 1 3.6217 5.0938 -2.3658 36 1 3.5642 5.1113 -0.5891 37 1 5.5262 6.3440 -1.0890 38 1 5.9814 5.2587 -2.4153 39 1 7.1323 2.6616 -2.6491 40 1 7.4095 1.8297 -1.1000 41 1 9.8586 2.0191 -1.4356 42 1 9.5822 2.8510 -2.9847 43 1 12.1398 0.3217 -3.7756 44 1 6.8123 4.0670 1.4961 45 1 5.2160 4.7922 1.1910 46 1 6.0214 2.0354 0.1402 47 1 5.1955 2.2722 1.6955 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000111342127.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:14:07 Heat of formation + Delta-G solvation = -163.527519 kcal Electronic energy + Delta-G solvation = -26522.280945 eV Core-core repulsion = 22830.569518 eV Total energy + Delta-G solvation = -3691.711427 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.52496 -38.28172 -38.17845 -37.03391 -35.92901 -34.89326 -33.70836 -33.19469 -32.74284 -27.68203 -27.33184 -27.02314 -25.57950 -23.74326 -22.48300 -21.88620 -21.41409 -19.77030 -19.13624 -18.41339 -18.02143 -17.25158 -17.11069 -16.78773 -16.57195 -16.33968 -15.80831 -15.53008 -15.28869 -14.98920 -14.51540 -14.43756 -14.18048 -13.80442 -13.75500 -13.59453 -13.28065 -13.24092 -13.18003 -13.10684 -12.90878 -12.85903 -12.78449 -12.36907 -12.28269 -12.19347 -12.17505 -12.00981 -11.79394 -11.67990 -11.61458 -11.55340 -11.36754 -11.13840 -10.65545 -10.38290 -9.92006 -8.27474 -6.41538 -0.71493 1.38459 1.42134 1.50398 1.71524 2.36548 2.70753 2.81434 3.05414 3.15315 3.53320 3.81614 3.96306 4.00265 4.05653 4.07817 4.10146 4.14358 4.22870 4.28908 4.39869 4.47609 4.50597 4.66683 4.67851 4.70369 4.71167 4.77517 4.87427 4.89614 5.07303 5.12909 5.16835 5.17629 5.21196 5.24059 5.25561 5.27578 5.34243 5.38693 5.43243 5.66646 5.79673 6.05132 6.42505 6.71140 7.28398 8.84654 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.009848 B = 0.004521 C = 0.003364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2842.648667 B = 6191.458950 C = 8322.240433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.127 4.127 3 C 0.058 3.942 4 O -0.413 6.413 5 C 0.101 3.899 6 H 0.079 0.921 7 C -0.148 4.148 8 C -0.117 4.117 9 C 0.110 3.890 10 N -0.985 5.985 11 S 2.607 3.393 12 O -0.991 6.991 13 O -0.992 6.992 14 C -0.591 4.591 15 C 0.025 3.975 16 C -0.540 4.540 17 H 0.071 0.929 18 C -0.002 4.002 19 N -0.933 5.933 20 Si 0.972 3.028 21 H -0.281 1.281 22 H -0.265 1.265 23 H -0.263 1.263 24 C 0.118 3.882 25 C -0.153 4.153 26 H 0.064 0.936 27 H 0.060 0.940 28 H 0.064 0.936 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.055 0.945 33 H 0.053 0.947 34 H 0.075 0.925 35 H 0.097 0.903 36 H 0.090 0.910 37 H 0.087 0.913 38 H 0.075 0.925 39 H 0.135 0.865 40 H 0.133 0.867 41 H 0.005 0.995 42 H 0.006 0.994 43 H 0.268 0.732 44 H 0.090 0.910 45 H 0.120 0.880 46 H 0.052 0.948 47 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.616 5.857 8.085 26.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.165 4.165 3 C -0.018 4.018 4 O -0.333 6.333 5 C 0.044 3.956 6 H 0.097 0.903 7 C -0.186 4.186 8 C -0.156 4.156 9 C -0.013 4.013 10 N -0.823 5.823 11 S 2.704 3.296 12 O -0.981 6.981 13 O -0.982 6.982 14 C -0.722 4.722 15 C -0.014 4.014 16 C -0.578 4.578 17 H 0.089 0.911 18 C -0.200 4.200 19 N -0.573 5.573 20 Si 0.796 3.204 21 H -0.206 1.206 22 H -0.190 1.190 23 H -0.188 1.188 24 C -0.008 4.008 25 C -0.192 4.192 26 H 0.083 0.917 27 H 0.079 0.921 28 H 0.083 0.917 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.094 0.906 35 H 0.115 0.885 36 H 0.109 0.891 37 H 0.106 0.894 38 H 0.093 0.907 39 H 0.153 0.847 40 H 0.151 0.849 41 H 0.023 0.977 42 H 0.024 0.976 43 H 0.077 0.923 44 H 0.108 0.892 45 H 0.138 0.862 46 H 0.071 0.929 47 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -23.605 6.277 8.230 25.775 hybrid contribution 0.254 -1.293 -0.816 1.550 sum -23.352 4.983 7.413 25.002 Atomic orbital electron populations 1.21666 0.93269 1.02688 1.02571 1.21494 0.96940 0.95610 1.02408 1.22699 0.80358 0.97965 1.00817 1.87978 1.20667 1.29345 1.95302 1.21054 0.94679 0.84324 0.95531 0.90334 1.21703 1.02772 0.96888 0.97252 1.21736 0.94892 0.94117 1.04877 1.22038 0.91448 0.95550 0.92303 1.57052 1.31516 1.68496 1.25244 1.04905 0.73925 0.76855 0.73870 1.93477 1.71731 1.87957 1.44973 1.93489 1.83056 1.55641 1.66038 1.30516 1.07067 1.20961 1.13640 1.18778 0.89176 0.97620 0.95821 1.21445 0.94867 1.04589 1.36937 0.91103 1.26093 0.94765 1.02352 0.96799 1.70092 0.99731 1.40921 1.46529 0.85391 0.77619 0.78441 0.78981 1.20619 1.18957 1.18789 1.21447 1.01634 0.94647 0.83039 1.21537 0.96916 0.98239 1.02536 0.91718 0.92051 0.91728 0.92494 0.91930 0.92201 0.92689 0.92786 0.90639 0.88483 0.89147 0.89447 0.90670 0.84715 0.84888 0.97665 0.97577 0.92312 0.89155 0.86170 0.92888 0.88552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 9.91 71.98 0.71 -0.88 16 2 C -0.13 -2.02 6.30 30.60 0.19 -1.83 16 3 C 0.06 0.94 5.63 71.98 0.41 1.34 16 4 O -0.41 -9.35 9.85 -148.98 -1.47 -10.82 16 5 C 0.10 1.90 2.08 28.61 0.06 1.96 16 6 H 0.08 1.06 6.96 -2.39 -0.02 1.04 16 7 C -0.15 -2.78 5.11 29.76 0.15 -2.63 16 8 C -0.12 -1.61 5.71 30.35 0.17 -1.44 16 9 C 0.11 2.18 5.93 86.61 0.51 2.69 16 10 N -0.98 -24.87 2.46 -511.74 -1.26 -26.13 16 11 S 2.61 96.92 5.31 -56.49 -0.30 96.62 16 12 O -0.99 -42.13 16.42 -127.65 -2.10 -44.23 16 13 O -0.99 -42.07 16.69 -127.65 -2.13 -44.20 16 14 C -0.59 -23.88 5.54 71.98 0.40 -23.48 16 15 C 0.02 1.35 4.98 29.85 0.15 1.50 16 16 C -0.54 -30.95 9.11 25.60 0.23 -30.72 16 17 H 0.07 3.81 7.74 -2.91 -0.02 3.79 16 18 C 0.00 -0.09 5.46 84.66 0.46 0.37 16 19 N -0.93 -57.83 13.29 21.45 0.28 -57.55 16 20 Si 0.97 44.40 29.54 68.60 2.03 46.42 16 21 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 22 H -0.26 -11.57 7.11 99.48 0.71 -10.87 16 23 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 24 C 0.12 2.42 5.60 87.38 0.49 2.91 16 25 C -0.15 -3.28 5.29 29.40 0.16 -3.13 16 26 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 27 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.06 0.78 8.06 -2.39 -0.02 0.76 16 32 H 0.05 0.79 7.35 -2.38 -0.02 0.77 16 33 H 0.05 1.28 6.44 -2.39 -0.02 1.26 16 34 H 0.08 1.32 7.18 -2.39 -0.02 1.31 16 35 H 0.10 1.02 8.14 -2.39 -0.02 1.01 16 36 H 0.09 0.85 7.31 -2.39 -0.02 0.83 16 37 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.07 1.68 7.19 -2.39 -0.02 1.66 16 39 H 0.13 4.89 7.56 -2.39 -0.02 4.87 16 40 H 0.13 4.99 6.24 -2.39 -0.01 4.97 16 41 H 0.01 0.30 8.14 -2.38 -0.02 0.28 16 42 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 43 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 44 H 0.09 2.11 6.75 -2.39 -0.02 2.10 16 45 H 0.12 1.58 8.06 -2.38 -0.02 1.56 16 46 H 0.05 1.42 6.06 -2.39 -0.01 1.40 16 47 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 Total: -1.00 -76.90 374.16 0.09 -76.82 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: 0.93 Total: 16.40 kcal Atomic # 6 Polarization: -57.43 SS G_CDS: 4.10 Total: -53.33 kcal Atomic # 7 Polarization: -82.70 SS G_CDS: -0.97 Total: -83.67 kcal Atomic # 8 Polarization: -93.55 SS G_CDS: -5.69 Total: -99.25 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.42 kcal Atomic # 16 Polarization: 96.92 SS G_CDS: -0.30 Total: 96.62 kcal Total: -76.90 0.09 -76.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111342127.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.711 kcal (2) G-P(sol) polarization free energy of solvation -76.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds