Wall clock time and date at job start Tue Mar 31 2020 13:21:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.48013 * 2 1 4 4 C 1.53087 * 109.47762 * 239.97971 * 2 1 3 5 5 C 1.53177 * 109.16133 * 182.40102 * 4 2 1 6 6 N 1.46501 * 109.54528 * 176.84580 * 5 4 2 7 7 C 1.34771 * 120.00457 * 155.17273 * 6 5 4 8 8 O 1.21599 * 119.99609 * 0.02562 * 7 6 5 9 9 C 1.47538 * 120.00523 * 179.97438 * 7 6 5 10 10 C 1.39666 * 120.19253 * 359.97438 * 9 7 6 11 11 C 1.37829 * 119.91978 * 180.02562 * 10 9 7 12 12 C 1.38582 * 120.31807 * 0.02753 * 11 10 9 13 13 C 1.38020 * 120.40437 * 359.69219 * 12 11 10 14 14 C 1.38841 * 120.06971 * 0.56015 * 13 12 11 15 15 O 1.35516 * 120.15947 * 179.74408 * 14 13 12 16 16 C 1.34819 * 117.00026 * 5.60015 * 15 14 13 17 17 H 1.07995 * 120.00109 * 354.93713 * 16 15 14 18 18 C 1.38701 * 119.99778 * 174.66027 * 16 15 14 19 19 N 1.31517 * 119.99990 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 119.99907 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46687 * 0.02562 * 20 18 16 22 22 H 1.48495 * 109.47130 * 120.00054 * 20 18 16 23 23 H 1.48500 * 109.46777 * 240.00303 * 20 18 16 24 24 C 1.53182 * 109.11078 * 56.93440 * 5 4 2 25 25 C 1.53106 * 109.15425 * 303.15224 * 24 5 4 26 26 H 1.08997 * 109.47699 * 177.50526 * 25 24 5 27 27 C 1.53001 * 109.41540 * 297.48566 * 25 24 5 28 28 O 1.42902 * 109.48589 * 57.47805 * 25 24 5 29 29 H 1.08995 * 109.47535 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46895 * 300.02242 * 1 2 3 31 31 H 1.09000 * 109.46711 * 60.01791 * 1 2 3 32 32 H 1.08994 * 109.52638 * 62.49134 * 4 2 1 33 33 H 1.09007 * 109.57533 * 302.33385 * 4 2 1 34 34 H 1.09003 * 109.54409 * 297.02124 * 5 4 2 35 35 H 0.97010 * 119.99736 * 335.17824 * 6 5 4 36 36 H 1.08000 * 120.04106 * 0.04287 * 10 9 7 37 37 H 1.07995 * 119.84512 * 179.97438 * 11 10 9 38 38 H 1.08003 * 119.79326 * 179.97438 * 12 11 10 39 39 H 1.08002 * 119.96729 * 180.28118 * 13 12 11 40 40 H 0.97004 * 119.99836 * 179.97438 * 19 18 16 41 41 H 1.09000 * 109.52135 * 62.97130 * 24 5 4 42 42 H 1.08996 * 109.51951 * 183.15811 * 24 5 4 43 43 H 1.08999 * 109.46784 * 179.97438 * 27 25 24 44 44 H 1.08990 * 109.47485 * 299.99499 * 27 25 24 45 45 H 1.09005 * 109.46714 * 59.99713 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0405 -0.7221 -1.2496 5 6 3.5711 -0.7705 -1.2124 6 7 4.0658 -1.5255 -2.3663 7 6 5.3090 -1.3010 -2.8358 8 8 6.0202 -0.4721 -2.3013 9 6 5.8074 -2.0617 -3.9976 10 6 4.9945 -3.0158 -4.6136 11 6 5.4660 -3.7236 -5.6982 12 6 6.7445 -3.4938 -6.1813 13 6 7.5569 -2.5500 -5.5863 14 6 7.1006 -1.8314 -4.4895 15 8 7.8987 -0.9079 -3.9006 16 6 9.0803 -0.6508 -4.4968 17 1 9.3893 -1.2291 -5.3549 18 6 9.8963 0.3604 -4.0115 19 7 9.5176 1.0679 -2.9696 20 14 11.5338 0.7163 -4.8370 21 1 11.7248 -0.2137 -5.9790 22 1 11.5446 2.1162 -5.3321 23 1 12.6333 0.5294 -3.8566 24 6 4.0197 -1.4586 0.0806 25 6 3.4309 -0.7091 1.2789 26 1 3.7104 -1.2202 2.2002 27 6 3.9762 0.7202 1.3027 28 8 2.0068 -0.6742 1.1663 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5142 0.8898 31 1 -0.3633 0.5136 -0.8902 32 1 1.7147 -0.1842 -2.1398 33 1 1.6444 -1.7374 -1.2722 34 1 3.9689 0.2439 -1.2426 35 1 3.4984 -2.1869 -2.7925 36 1 3.9975 -3.1986 -4.2407 37 1 4.8366 -4.4613 -6.1734 38 1 7.1055 -4.0536 -7.0315 39 1 8.5504 -2.3735 -5.9714 40 1 10.0885 1.7748 -2.6300 41 1 3.6648 -2.4892 0.0869 42 1 5.1079 -1.4468 0.1408 43 1 3.5572 1.2547 2.1552 44 1 5.0624 0.6934 1.3885 45 1 3.6970 1.2309 0.3810 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000122769721.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:59 Heat of formation + Delta-G solvation = -87.970735 kcal Electronic energy + Delta-G solvation = -27334.480065 eV Core-core repulsion = 23510.601075 eV Total energy + Delta-G solvation = -3823.878990 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.26293 -39.35680 -37.91571 -36.34522 -34.75538 -33.43782 -32.35737 -31.89122 -30.32371 -28.94671 -28.64582 -26.69631 -25.40722 -23.69353 -22.77524 -22.08122 -21.21067 -19.85988 -19.39482 -18.05531 -17.58868 -16.43552 -16.26244 -16.15535 -15.39614 -14.76960 -14.64774 -14.52458 -14.28724 -14.09091 -13.95078 -13.71496 -13.60010 -13.12299 -12.90185 -12.70210 -12.63352 -12.48290 -12.11721 -11.95717 -11.77381 -11.72889 -11.39165 -11.28321 -11.12356 -11.02107 -10.92617 -10.86473 -10.75521 -10.45546 -10.15589 -9.66161 -9.52822 -8.89615 -8.80687 -8.54731 -8.28091 -7.32077 -6.45842 -4.05682 1.70644 2.30680 3.10645 3.11617 3.17275 3.58647 3.72105 3.73760 3.92362 4.59768 4.65634 4.75576 4.82190 5.03071 5.05568 5.10029 5.16408 5.20910 5.31071 5.36321 5.40991 5.44784 5.48703 5.54064 5.67275 5.70511 5.75198 5.86472 5.90624 5.98042 6.01986 6.11045 6.12906 6.18926 6.22456 6.39224 6.55311 6.68240 6.90256 6.98127 7.05365 7.22604 7.23356 7.28486 7.68321 7.91037 8.13050 8.94111 9.09791 9.66535 10.68026 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.013816 B = 0.003747 C = 0.003071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2026.177697 B = 7470.617359 C = 9116.011630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.086 3.914 3 H 0.064 0.936 4 C -0.156 4.156 5 C 0.149 3.851 6 N -0.739 5.739 7 C 0.555 3.445 8 O -0.500 6.500 9 C -0.228 4.228 10 C -0.038 4.038 11 C -0.231 4.231 12 C -0.051 4.051 13 C -0.238 4.238 14 C 0.190 3.810 15 O -0.124 6.124 16 C -0.404 4.404 17 H 0.094 0.906 18 C 0.045 3.955 19 N -0.833 5.833 20 Si 0.940 3.060 21 H -0.266 1.266 22 H -0.275 1.275 23 H -0.275 1.275 24 C -0.160 4.160 25 C 0.093 3.907 26 H 0.103 0.897 27 C -0.187 4.187 28 O -0.377 6.377 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.090 0.910 35 H 0.391 0.609 36 H 0.111 0.889 37 H 0.109 0.891 38 H 0.110 0.890 39 H 0.132 0.868 40 H 0.270 0.730 41 H 0.069 0.931 42 H 0.083 0.917 43 H 0.060 0.940 44 H 0.073 0.927 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.265 -4.558 2.849 15.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.028 3.972 3 H 0.082 0.918 4 C -0.194 4.194 5 C 0.044 3.956 6 N -0.394 5.394 7 C 0.344 3.656 8 O -0.374 6.374 9 C -0.233 4.233 10 C -0.057 4.057 11 C -0.250 4.250 12 C -0.070 4.070 13 C -0.257 4.257 14 C 0.130 3.870 15 O -0.022 6.022 16 C -0.480 4.480 17 H 0.112 0.888 18 C -0.163 4.163 19 N -0.464 5.464 20 Si 0.765 3.235 21 H -0.190 1.190 22 H -0.200 1.200 23 H -0.200 1.200 24 C -0.199 4.199 25 C 0.035 3.965 26 H 0.120 0.880 27 C -0.245 4.245 28 O -0.296 6.296 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.096 0.904 33 H 0.093 0.907 34 H 0.108 0.892 35 H 0.226 0.774 36 H 0.129 0.871 37 H 0.127 0.873 38 H 0.128 0.872 39 H 0.149 0.851 40 H 0.081 0.919 41 H 0.088 0.912 42 H 0.101 0.899 43 H 0.079 0.921 44 H 0.092 0.908 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -13.738 -3.630 3.750 14.696 hybrid contribution 0.800 -0.219 -0.993 1.294 sum -12.938 -3.849 2.757 13.777 Atomic orbital electron populations 1.21754 0.93070 1.02829 1.02356 1.22020 0.94822 0.95669 0.84697 0.91822 1.22524 0.95342 1.02380 0.99184 1.20828 0.92498 0.97032 0.85287 1.45964 1.16521 1.43617 1.33303 1.18253 0.80838 0.82916 0.83563 1.90941 1.55174 1.32952 1.58366 1.18864 0.94625 1.06661 1.03105 1.20760 0.97114 0.93403 0.94449 1.20465 0.97437 1.05666 1.01419 1.20900 0.93529 0.95200 0.97328 1.21167 1.02185 1.01874 1.00517 1.19275 0.89059 0.88853 0.89812 1.84172 1.26662 1.46808 1.44584 1.21547 0.93453 1.18595 1.14356 0.88845 1.25379 0.99619 0.94992 0.96291 1.70137 1.36649 1.18653 1.20953 0.85670 0.80094 0.78819 0.78965 1.18970 1.20013 1.20003 1.22623 1.02635 1.00000 0.94687 1.22141 0.80213 0.95820 0.98375 0.87968 1.22464 1.02620 0.96968 1.02420 1.87946 1.21138 1.77672 1.42868 0.91874 0.91866 0.91141 0.90387 0.90700 0.89231 0.77448 0.87090 0.87287 0.87190 0.85078 0.91943 0.91200 0.89853 0.92095 0.90826 0.91815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 9.57 37.16 0.36 -0.86 16 2 C 0.09 0.93 2.94 -26.68 -0.08 0.85 16 3 H 0.06 0.70 6.34 -51.93 -0.33 0.37 16 4 C -0.16 -1.74 4.89 -26.59 -0.13 -1.87 16 5 C 0.15 2.17 2.23 -67.74 -0.15 2.02 16 6 N -0.74 -11.89 5.03 -54.66 -0.28 -12.17 16 7 C 0.55 12.06 7.73 -12.47 -0.10 11.96 16 8 O -0.50 -13.45 14.83 -16.58 -0.25 -13.69 16 9 C -0.23 -4.93 5.89 -104.81 -0.62 -5.54 16 10 C -0.04 -0.66 9.53 -39.20 -0.37 -1.03 16 11 C -0.23 -3.77 10.03 -39.60 -0.40 -4.17 16 12 C -0.05 -0.90 10.03 -39.53 -0.40 -1.30 16 13 C -0.24 -5.12 9.16 -39.44 -0.36 -5.48 16 14 C 0.19 4.70 6.66 -38.60 -0.26 4.44 16 15 O -0.12 -3.65 7.84 -21.06 -0.16 -3.81 16 16 C -0.40 -11.40 9.49 30.90 0.29 -11.11 16 17 H 0.09 2.40 5.21 -52.49 -0.27 2.13 16 18 C 0.04 1.25 5.49 -17.52 -0.10 1.15 16 19 N -0.83 -24.97 13.67 55.48 0.76 -24.21 16 20 Si 0.94 20.47 29.55 -169.99 -5.02 15.45 16 21 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 22 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 23 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 24 C -0.16 -2.27 5.22 -26.58 -0.14 -2.41 16 25 C 0.09 1.15 3.91 -26.68 -0.10 1.04 16 26 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 27 C -0.19 -2.34 8.65 37.16 0.32 -2.02 16 28 O -0.38 -4.70 10.24 -35.23 -0.36 -5.06 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.09 1.54 6.06 -51.93 -0.31 1.22 16 35 H 0.39 5.08 6.64 -40.82 -0.27 4.81 16 36 H 0.11 1.46 6.40 -52.49 -0.34 1.12 16 37 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 38 H 0.11 1.58 8.06 -52.48 -0.42 1.16 16 39 H 0.13 2.78 5.64 -52.49 -0.30 2.49 16 40 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 41 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16 43 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 45 H 0.06 0.83 4.98 -51.93 -0.26 0.57 16 LS Contribution 361.01 15.07 5.44 5.44 Total: -1.00 -34.02 361.01 -8.39 -42.40 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: -6.29 Total: 9.95 kcal Atomic # 6 Polarization: -12.08 SS G_CDS: -2.23 Total: -14.30 kcal Atomic # 7 Polarization: -36.85 SS G_CDS: 0.48 Total: -36.37 kcal Atomic # 8 Polarization: -21.80 SS G_CDS: -0.77 Total: -22.57 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.02 -8.39 -42.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122769721.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.568 kcal (2) G-P(sol) polarization free energy of solvation -34.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds