Wall clock time and date at job start Tue Mar 31 2020 13:21:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.48013 * 2 1 4 4 C 1.53087 * 109.47762 * 239.97971 * 2 1 3 5 5 C 1.53177 * 109.16133 * 182.40102 * 4 2 1 6 6 N 1.46501 * 109.54528 * 176.84580 * 5 4 2 7 7 C 1.34771 * 120.00457 * 155.17273 * 6 5 4 8 8 O 1.21599 * 119.99609 * 0.02562 * 7 6 5 9 9 C 1.47538 * 120.00523 * 179.97438 * 7 6 5 10 10 C 1.39666 * 120.19253 * 359.97438 * 9 7 6 11 11 C 1.37829 * 119.91978 * 180.02562 * 10 9 7 12 12 C 1.38582 * 120.31807 * 0.02753 * 11 10 9 13 13 C 1.38020 * 120.40437 * 359.69219 * 12 11 10 14 14 C 1.38841 * 120.06971 * 0.56015 * 13 12 11 15 15 O 1.35516 * 120.15947 * 179.74408 * 14 13 12 16 16 C 1.34819 * 117.00026 * 5.60015 * 15 14 13 17 17 H 1.07995 * 120.00109 * 354.93713 * 16 15 14 18 18 C 1.38701 * 119.99778 * 174.66027 * 16 15 14 19 19 N 1.31517 * 119.99990 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 119.99907 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46687 * 0.02562 * 20 18 16 22 22 H 1.48495 * 109.47130 * 120.00054 * 20 18 16 23 23 H 1.48500 * 109.46777 * 240.00303 * 20 18 16 24 24 C 1.53182 * 109.11078 * 56.93440 * 5 4 2 25 25 C 1.53106 * 109.15425 * 303.15224 * 24 5 4 26 26 H 1.08997 * 109.47699 * 177.50526 * 25 24 5 27 27 C 1.53001 * 109.41540 * 297.48566 * 25 24 5 28 28 O 1.42902 * 109.48589 * 57.47805 * 25 24 5 29 29 H 1.08995 * 109.47535 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46895 * 300.02242 * 1 2 3 31 31 H 1.09000 * 109.46711 * 60.01791 * 1 2 3 32 32 H 1.08994 * 109.52638 * 62.49134 * 4 2 1 33 33 H 1.09007 * 109.57533 * 302.33385 * 4 2 1 34 34 H 1.09003 * 109.54409 * 297.02124 * 5 4 2 35 35 H 0.97010 * 119.99736 * 335.17824 * 6 5 4 36 36 H 1.08000 * 120.04106 * 0.04287 * 10 9 7 37 37 H 1.07995 * 119.84512 * 179.97438 * 11 10 9 38 38 H 1.08003 * 119.79326 * 179.97438 * 12 11 10 39 39 H 1.08002 * 119.96729 * 180.28118 * 13 12 11 40 40 H 0.97004 * 119.99836 * 179.97438 * 19 18 16 41 41 H 1.09000 * 109.52135 * 62.97130 * 24 5 4 42 42 H 1.08996 * 109.51951 * 183.15811 * 24 5 4 43 43 H 1.08999 * 109.46784 * 179.97438 * 27 25 24 44 44 H 1.08990 * 109.47485 * 299.99499 * 27 25 24 45 45 H 1.09005 * 109.46714 * 59.99713 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0405 -0.7221 -1.2496 5 6 3.5711 -0.7705 -1.2124 6 7 4.0658 -1.5255 -2.3663 7 6 5.3090 -1.3010 -2.8358 8 8 6.0202 -0.4721 -2.3013 9 6 5.8074 -2.0617 -3.9976 10 6 4.9945 -3.0158 -4.6136 11 6 5.4660 -3.7236 -5.6982 12 6 6.7445 -3.4938 -6.1813 13 6 7.5569 -2.5500 -5.5863 14 6 7.1006 -1.8314 -4.4895 15 8 7.8987 -0.9079 -3.9006 16 6 9.0803 -0.6508 -4.4968 17 1 9.3893 -1.2291 -5.3549 18 6 9.8963 0.3604 -4.0115 19 7 9.5176 1.0679 -2.9696 20 14 11.5338 0.7163 -4.8370 21 1 11.7248 -0.2137 -5.9790 22 1 11.5446 2.1162 -5.3321 23 1 12.6333 0.5294 -3.8566 24 6 4.0197 -1.4586 0.0806 25 6 3.4309 -0.7091 1.2789 26 1 3.7104 -1.2202 2.2002 27 6 3.9762 0.7202 1.3027 28 8 2.0068 -0.6742 1.1663 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5142 0.8898 31 1 -0.3633 0.5136 -0.8902 32 1 1.7147 -0.1842 -2.1398 33 1 1.6444 -1.7374 -1.2722 34 1 3.9689 0.2439 -1.2426 35 1 3.4984 -2.1869 -2.7925 36 1 3.9975 -3.1986 -4.2407 37 1 4.8366 -4.4613 -6.1734 38 1 7.1055 -4.0536 -7.0315 39 1 8.5504 -2.3735 -5.9714 40 1 10.0885 1.7748 -2.6300 41 1 3.6648 -2.4892 0.0869 42 1 5.1079 -1.4468 0.1408 43 1 3.5572 1.2547 2.1552 44 1 5.0624 0.6934 1.3885 45 1 3.6970 1.2309 0.3810 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000122769721.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:58 Heat of formation + Delta-G solvation = -111.298080 kcal Electronic energy + Delta-G solvation = -27335.491615 eV Core-core repulsion = 23510.601075 eV Total energy + Delta-G solvation = -3824.890540 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.57277 -40.83840 -39.55770 -38.02942 -36.17995 -34.35911 -34.33690 -33.27108 -31.70445 -30.57533 -29.76799 -27.68783 -27.38392 -25.12325 -23.91679 -23.40152 -22.68227 -21.40714 -20.49873 -19.85363 -19.22250 -17.90569 -17.58969 -17.28254 -16.70512 -16.32403 -16.16627 -15.96097 -15.77933 -15.56287 -15.38238 -15.20868 -14.97600 -14.59677 -14.29599 -14.13747 -13.88443 -13.57279 -13.55396 -13.04179 -12.98442 -12.86450 -12.74618 -12.69287 -12.56365 -12.35781 -12.33363 -12.10939 -12.03622 -11.92953 -11.44031 -11.23934 -10.85375 -10.75599 -10.38839 -10.07740 -9.78728 -9.04361 -8.45715 -6.16628 0.11846 0.71976 1.31342 1.41834 1.51059 2.09421 2.14522 2.21520 2.76191 2.86914 3.21582 3.46172 3.61203 3.70318 3.84649 3.92129 4.02674 4.05846 4.07852 4.24971 4.31058 4.31971 4.38130 4.49794 4.51911 4.55603 4.65594 4.76811 4.81650 4.89720 4.95061 5.01028 5.05374 5.06376 5.07392 5.12636 5.13286 5.27851 5.35699 5.47609 5.57647 5.60723 5.68957 5.95335 6.16322 6.26234 6.70229 6.93835 7.49279 7.79623 8.74893 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.013816 B = 0.003747 C = 0.003071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2026.177697 B = 7470.617359 C = 9116.011630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.079 3.921 3 H 0.057 0.943 4 C -0.144 4.144 5 C 0.144 3.856 6 N -0.713 5.713 7 C 0.549 3.451 8 O -0.565 6.565 9 C -0.246 4.246 10 C -0.030 4.030 11 C -0.201 4.201 12 C -0.040 4.040 13 C -0.259 4.259 14 C 0.149 3.851 15 O -0.189 6.189 16 C -0.428 4.428 17 H 0.106 0.894 18 C -0.021 4.021 19 N -0.904 5.904 20 Si 1.021 2.979 21 H -0.246 1.246 22 H -0.269 1.269 23 H -0.269 1.269 24 C -0.155 4.155 25 C 0.099 3.901 26 H 0.118 0.882 27 C -0.185 4.185 28 O -0.379 6.379 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.087 0.913 32 H 0.091 0.909 33 H 0.095 0.905 34 H 0.055 0.945 35 H 0.411 0.589 36 H 0.160 0.840 37 H 0.164 0.836 38 H 0.153 0.847 39 H 0.122 0.878 40 H 0.270 0.730 41 H 0.084 0.916 42 H 0.045 0.955 43 H 0.078 0.922 44 H 0.054 0.946 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.539 -7.707 0.755 19.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.021 3.979 3 H 0.075 0.925 4 C -0.182 4.182 5 C 0.039 3.961 6 N -0.368 5.368 7 C 0.339 3.661 8 O -0.444 6.444 9 C -0.251 4.251 10 C -0.048 4.048 11 C -0.219 4.219 12 C -0.059 4.059 13 C -0.278 4.278 14 C 0.094 3.906 15 O -0.091 6.091 16 C -0.503 4.503 17 H 0.123 0.877 18 C -0.220 4.220 19 N -0.540 5.540 20 Si 0.840 3.160 21 H -0.169 1.169 22 H -0.194 1.194 23 H -0.194 1.194 24 C -0.194 4.194 25 C 0.040 3.960 26 H 0.136 0.864 27 C -0.243 4.243 28 O -0.298 6.298 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.106 0.894 32 H 0.109 0.891 33 H 0.114 0.886 34 H 0.074 0.926 35 H 0.249 0.751 36 H 0.178 0.822 37 H 0.182 0.818 38 H 0.171 0.829 39 H 0.140 0.860 40 H 0.079 0.921 41 H 0.103 0.897 42 H 0.064 0.936 43 H 0.097 0.903 44 H 0.073 0.927 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -17.113 -6.866 1.617 18.509 hybrid contribution 1.441 0.456 -0.460 1.580 sum -15.672 -6.410 1.158 16.971 Atomic orbital electron populations 1.21749 0.90653 1.03591 1.03421 1.22228 0.96589 0.95151 0.83927 0.92483 1.22483 0.91744 1.03920 1.00060 1.20953 0.95145 0.95128 0.84824 1.45715 1.14726 1.43277 1.33078 1.18542 0.81905 0.82165 0.83517 1.90928 1.57346 1.35815 1.60335 1.19326 0.94438 1.07880 1.03438 1.21309 0.98374 0.91176 0.93950 1.21181 0.96880 1.04357 0.99465 1.21437 0.93507 0.93346 0.97563 1.21306 1.02856 1.03258 1.00379 1.20083 0.90258 0.88867 0.91361 1.84177 1.27905 1.50032 1.47007 1.22072 0.94019 1.19278 1.14974 0.87651 1.26738 1.03969 0.94459 0.96882 1.70328 1.38988 1.20636 1.24075 0.84516 0.74306 0.78965 0.78243 1.16870 1.19383 1.19358 1.22546 1.00374 1.01094 0.95430 1.22083 0.80547 0.95237 0.98089 0.86435 1.22438 1.01522 0.97666 1.02651 1.87955 1.20386 1.77808 1.43671 0.91202 0.91573 0.89410 0.89069 0.88631 0.92641 0.75111 0.82220 0.81808 0.82888 0.85994 0.92078 0.89714 0.93630 0.90289 0.92709 0.92871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 9.57 71.98 0.69 -1.21 16 2 C 0.08 1.56 2.94 30.63 0.09 1.65 16 3 H 0.06 1.21 6.34 -2.39 -0.02 1.20 16 4 C -0.14 -2.88 4.89 30.68 0.15 -2.73 16 5 C 0.14 4.25 2.23 45.11 0.10 4.35 16 6 N -0.71 -22.56 5.03 -445.12 -2.24 -24.80 16 7 C 0.55 24.88 7.73 86.70 0.67 25.55 16 8 O -0.57 -33.28 14.83 16.87 0.25 -33.03 16 9 C -0.25 -10.69 5.89 -19.99 -0.12 -10.81 16 10 C -0.03 -0.89 9.53 22.52 0.21 -0.67 16 11 C -0.20 -5.31 10.03 22.25 0.22 -5.09 16 12 C -0.04 -1.26 10.03 22.30 0.22 -1.03 16 13 C -0.26 -11.11 9.16 22.36 0.20 -10.90 16 14 C 0.15 7.73 6.66 22.91 0.15 7.89 16 15 O -0.19 -12.06 7.84 0.84 0.01 -12.06 16 16 C -0.43 -26.01 9.49 67.93 0.64 -25.36 16 17 H 0.11 5.77 5.21 -2.91 -0.02 5.75 16 18 C -0.02 -1.27 5.49 84.85 0.47 -0.80 16 19 N -0.90 -59.30 13.67 21.62 0.30 -59.01 16 20 Si 1.02 44.44 29.55 68.60 2.03 46.47 16 21 H -0.25 -9.67 7.11 99.48 0.71 -8.96 16 22 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 23 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 24 C -0.16 -4.50 5.22 30.69 0.16 -4.34 16 25 C 0.10 2.45 3.91 30.63 0.12 2.57 16 26 H 0.12 2.56 8.14 -2.39 -0.02 2.54 16 27 C -0.19 -4.91 8.65 71.98 0.62 -4.29 16 28 O -0.38 -8.79 10.24 -148.98 -1.53 -10.32 16 29 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.10 1.56 8.14 -2.38 -0.02 1.54 16 34 H 0.06 2.05 6.06 -2.39 -0.01 2.04 16 35 H 0.41 9.35 6.64 -92.70 -0.62 8.74 16 36 H 0.16 3.17 6.40 -2.91 -0.02 3.15 16 37 H 0.16 2.79 8.06 -2.91 -0.02 2.76 16 38 H 0.15 3.49 8.06 -2.91 -0.02 3.47 16 39 H 0.12 5.33 5.64 -2.91 -0.02 5.31 16 40 H 0.27 16.19 8.31 -92.71 -0.77 15.42 16 41 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 42 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 43 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 44 H 0.05 1.63 8.14 -2.39 -0.02 1.62 16 45 H 0.05 1.50 4.98 -2.38 -0.01 1.49 16 Total: -1.00 -86.99 361.01 3.83 -83.16 By element: Atomic # 1 Polarization: 34.40 SS G_CDS: 0.40 Total: 34.80 kcal Atomic # 6 Polarization: -29.83 SS G_CDS: 4.61 Total: -25.22 kcal Atomic # 7 Polarization: -81.86 SS G_CDS: -1.95 Total: -83.81 kcal Atomic # 8 Polarization: -54.13 SS G_CDS: -1.27 Total: -55.40 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Total: -86.99 3.83 -83.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122769721.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.137 kcal (2) G-P(sol) polarization free energy of solvation -86.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds