Wall clock time and date at job start Tue Mar 31 2020 12:01:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53006 * 109.47132 * 2 1 4 4 N 1.46495 * 109.46915 * 179.97438 * 3 2 1 5 5 C 1.34779 * 119.99717 * 179.97438 * 4 3 2 6 6 O 1.21553 * 119.99837 * 0.02562 * 5 4 3 7 7 C 1.47865 * 120.00042 * 180.02562 * 5 4 3 8 8 C 1.39708 * 120.07114 * 359.97438 * 7 5 4 9 9 C 1.38057 * 120.15948 * 180.02562 * 8 7 5 10 10 C 1.38094 * 120.29882 * 359.71844 * 9 8 7 11 11 C 1.39716 * 120.13793 * 0.55314 * 10 9 8 12 12 C 1.47741 * 120.07875 * 179.71805 * 11 10 9 13 13 O 1.21470 * 119.99611 * 179.73088 * 12 11 10 14 14 O 1.34702 * 120.00079 * 359.72829 * 12 11 10 15 15 C 1.45200 * 117.00095 * 179.97438 * 14 12 11 16 16 H 1.09001 * 109.47321 * 329.99982 * 15 14 12 17 17 C 1.50706 * 109.46954 * 210.00431 * 15 14 12 18 18 H 1.07995 * 120.00167 * 359.72237 * 17 15 14 19 19 C 1.37879 * 119.99394 * 179.97438 * 17 15 14 20 20 N 1.31514 * 120.00338 * 0.02562 * 19 17 15 21 21 Si 1.86800 * 119.99424 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47474 * 90.00322 * 21 19 17 23 23 H 1.48507 * 109.46754 * 210.00056 * 21 19 17 24 24 H 1.48498 * 109.47278 * 329.99887 * 21 19 17 25 25 C 1.52997 * 109.46978 * 90.00481 * 15 14 12 26 26 C 1.53001 * 109.46997 * 294.99673 * 25 15 14 27 27 C 1.39283 * 120.07071 * 179.97438 * 7 5 4 28 28 H 1.08996 * 109.46796 * 60.00373 * 1 2 3 29 29 H 1.09003 * 109.46995 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47214 * 300.00290 * 1 2 3 31 31 H 1.08997 * 109.47405 * 240.00133 * 2 1 3 32 32 H 1.08996 * 109.47299 * 119.99789 * 2 1 3 33 33 H 1.08997 * 109.46867 * 59.99804 * 3 2 1 34 34 H 1.08996 * 109.46857 * 300.00060 * 3 2 1 35 35 H 0.96997 * 120.00598 * 0.02562 * 4 3 2 36 36 H 1.08002 * 119.92288 * 0.04250 * 8 7 5 37 37 H 1.08001 * 119.85561 * 179.97438 * 9 8 7 38 38 H 1.07998 * 119.93069 * 180.30378 * 10 9 8 39 39 H 0.96996 * 119.99730 * 179.97438 * 20 19 17 40 40 H 1.08993 * 109.47322 * 54.99974 * 25 15 14 41 41 H 1.09002 * 109.47196 * 175.00098 * 25 15 14 42 42 H 1.08996 * 109.46972 * 179.97438 * 26 25 15 43 43 H 1.08993 * 109.47331 * 300.00296 * 26 25 15 44 44 H 1.09001 * 109.46791 * 60.00740 * 26 25 15 45 45 H 1.08001 * 120.14750 * 0.02562 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1789 2.6097 0.0002 6 8 3.5711 3.6624 -0.0002 7 6 5.6576 2.6097 0.0003 8 6 6.3576 1.4007 0.0013 9 6 7.7382 1.3986 0.0019 10 6 8.4367 2.5899 -0.0044 11 6 7.7493 3.8062 0.0003 12 6 8.4979 5.0799 -0.0002 13 8 7.8987 6.1365 -0.0010 14 8 9.8449 5.0694 0.0005 15 6 10.5142 6.3579 -0.0006 16 1 9.8921 7.0901 -0.5155 17 6 11.8380 6.2358 -0.7104 18 1 12.1475 5.2839 -1.1158 19 6 12.6562 7.3383 -0.8376 20 7 12.2816 8.4962 -0.3391 21 14 14.2967 7.1870 -1.7180 22 1 14.1103 7.4682 -3.1642 23 1 15.2582 8.1625 -1.1441 24 1 14.8260 5.8103 -1.5456 25 6 10.7487 6.8119 1.4415 26 6 9.4016 7.0561 2.1247 27 6 6.3554 3.8151 -0.0007 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 1.6767 1.9563 0.8899 34 1 1.6767 1.9563 -0.8900 35 1 3.9901 0.6025 0.0006 36 1 5.8175 0.4654 0.0013 37 1 8.2744 0.4611 0.0031 38 1 9.5166 2.5813 -0.0089 39 1 12.8575 9.2716 -0.4283 40 1 11.2951 6.0388 1.9815 41 1 11.3289 7.7347 1.4421 42 1 9.5687 7.3791 3.1522 43 1 8.8552 7.8292 1.5847 44 1 8.8215 6.1333 2.1242 45 1 5.8190 4.7525 -0.0011 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188009877.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:19 Heat of formation + Delta-G solvation = -115.626347 kcal Electronic energy + Delta-G solvation = -25997.374547 eV Core-core repulsion = 22172.296320 eV Total energy + Delta-G solvation = -3825.078228 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.49930 -39.60357 -38.15640 -36.12226 -35.75847 -33.56013 -33.18212 -31.59696 -31.21364 -31.05586 -27.36913 -26.77092 -24.44979 -23.67871 -22.90801 -22.04911 -21.27229 -20.42698 -19.50672 -18.27374 -16.75145 -16.70986 -16.41760 -16.14665 -16.08800 -15.48302 -15.31234 -14.75291 -14.70242 -14.46756 -14.21146 -13.89895 -13.36532 -13.14933 -12.96753 -12.83754 -12.58530 -12.50588 -12.09135 -12.00382 -11.60956 -11.57005 -11.44392 -11.35954 -11.22304 -11.19526 -10.95346 -10.66868 -10.29385 -10.17276 -9.81945 -9.67622 -9.44944 -9.38836 -9.15121 -9.09289 -8.81555 -8.46282 -6.19151 -4.26509 0.55784 0.98060 2.53150 2.80926 3.20125 3.23977 3.29319 3.32592 3.57299 3.90985 4.30852 4.33883 4.45469 4.50280 4.64718 4.71417 4.77242 5.12643 5.14314 5.16581 5.17019 5.20254 5.26918 5.40714 5.55369 5.65051 5.70167 5.74278 5.76864 6.05430 6.12394 6.17408 6.24629 6.29871 6.34523 6.47562 6.63684 6.87368 6.97138 7.17246 7.18288 7.23178 7.60309 7.72860 7.92191 7.97126 8.14066 8.59298 8.86039 9.38528 10.87628 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.028751 B = 0.002344 C = 0.002255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.649616 B =11944.507102 C =12413.858662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.136 4.136 3 C 0.117 3.883 4 N -0.731 5.731 5 C 0.562 3.438 6 O -0.530 6.530 7 C -0.154 4.154 8 C -0.065 4.065 9 C -0.140 4.140 10 C -0.036 4.036 11 C -0.117 4.117 12 C 0.494 3.506 13 O -0.506 6.506 14 O -0.350 6.350 15 C 0.222 3.778 16 H 0.049 0.951 17 C -0.521 4.521 18 H 0.069 0.931 19 C 0.063 3.937 20 N -0.887 5.887 21 Si 0.911 3.089 22 H -0.278 1.278 23 H -0.284 1.284 24 H -0.271 1.271 25 C -0.135 4.135 26 C -0.144 4.144 27 C -0.001 4.001 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.399 0.601 36 H 0.127 0.873 37 H 0.137 0.863 38 H 0.148 0.852 39 H 0.267 0.733 40 H 0.042 0.958 41 H 0.109 0.891 42 H 0.033 0.967 43 H 0.054 0.946 44 H 0.031 0.969 45 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.195 -19.902 1.798 25.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.174 4.174 3 C -0.006 4.006 4 N -0.384 5.384 5 C 0.350 3.650 6 O -0.407 6.407 7 C -0.157 4.157 8 C -0.083 4.083 9 C -0.158 4.158 10 C -0.054 4.054 11 C -0.118 4.118 12 C 0.338 3.662 13 O -0.397 6.397 14 O -0.266 6.266 15 C 0.169 3.831 16 H 0.066 0.934 17 C -0.559 4.559 18 H 0.087 0.913 19 C -0.140 4.140 20 N -0.524 5.524 21 Si 0.738 3.262 22 H -0.204 1.204 23 H -0.210 1.210 24 H -0.196 1.196 25 C -0.173 4.173 26 C -0.201 4.201 27 C -0.020 4.020 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.235 0.765 36 H 0.145 0.855 37 H 0.154 0.846 38 H 0.166 0.834 39 H 0.077 0.923 40 H 0.061 0.939 41 H 0.127 0.873 42 H 0.053 0.947 43 H 0.073 0.927 44 H 0.050 0.950 45 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -16.719 -18.593 1.820 25.070 hybrid contribution 1.077 -0.318 -0.386 1.187 sum -15.642 -18.911 1.434 24.583 Atomic orbital electron populations 1.21680 0.94435 1.02201 1.02470 1.21746 0.97126 0.95765 1.02782 1.21433 0.79155 0.97236 1.02771 1.45890 1.07447 1.08540 1.76517 1.18227 0.87080 0.83686 0.76040 1.90810 1.69804 1.31097 1.48996 1.19717 0.92661 0.94137 1.09181 1.21420 0.94786 0.96600 0.95538 1.21099 0.93686 0.98548 1.02442 1.21857 1.01740 0.90968 0.90849 1.19449 0.92991 0.92618 1.06724 1.20826 0.83260 0.88318 0.73831 1.90803 1.70420 1.32707 1.45732 1.86508 1.17405 1.40961 1.81726 1.20735 0.91269 0.76754 0.94292 0.93360 1.21021 1.01500 0.96806 1.36621 0.91296 1.24889 0.98726 0.94795 0.95559 1.69890 1.37756 1.00243 1.44541 0.86280 0.82230 0.78097 0.79558 1.20413 1.20954 1.19618 1.22022 0.95995 1.03519 0.95804 1.21870 0.98909 1.00417 0.98933 1.21398 0.92296 0.98635 0.89711 0.92266 0.92140 0.92264 0.91229 0.91235 0.91266 0.91255 0.76520 0.85499 0.84556 0.83416 0.92349 0.93937 0.87266 0.94749 0.92724 0.94966 0.83209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.65 9.91 37.16 0.37 -0.28 16 2 C -0.14 -0.63 6.05 -26.73 -0.16 -0.79 16 3 C 0.12 0.89 5.67 -4.04 -0.02 0.86 16 4 N -0.73 -6.18 5.51 -61.25 -0.34 -6.52 16 5 C 0.56 7.17 7.77 -12.32 -0.10 7.07 16 6 O -0.53 -8.93 16.34 5.32 0.09 -8.85 16 7 C -0.15 -1.93 5.87 -105.02 -0.62 -2.55 16 8 C -0.06 -0.59 9.54 -39.10 -0.37 -0.96 16 9 C -0.14 -1.36 10.02 -39.70 -0.40 -1.75 16 10 C -0.04 -0.48 9.61 -39.08 -0.38 -0.85 16 11 C -0.12 -1.95 5.87 -105.03 -0.62 -2.57 16 12 C 0.49 10.59 6.35 34.61 0.22 10.81 16 13 O -0.51 -12.12 13.52 -19.24 -0.26 -12.38 16 14 O -0.35 -8.18 9.05 -40.50 -0.37 -8.55 16 15 C 0.22 5.87 2.25 -27.88 -0.06 5.80 16 16 H 0.05 1.42 7.16 -51.93 -0.37 1.05 16 17 C -0.52 -14.40 8.90 -34.44 -0.31 -14.71 16 18 H 0.07 1.86 7.81 -52.49 -0.41 1.45 16 19 C 0.06 1.71 5.29 -17.82 -0.09 1.61 16 20 N -0.89 -24.95 11.29 55.43 0.63 -24.32 16 21 Si 0.91 20.87 29.54 -169.99 -5.02 15.85 16 22 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 23 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 24 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 25 C -0.14 -3.37 5.49 -26.73 -0.15 -3.51 16 26 C -0.14 -3.22 8.56 37.16 0.32 -2.90 16 27 C 0.00 -0.02 9.14 -38.77 -0.35 -0.38 16 28 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.40 2.14 6.50 -40.82 -0.27 1.87 16 36 H 0.13 0.64 6.39 -52.49 -0.34 0.31 16 37 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 38 H 0.15 1.94 7.60 -52.49 -0.40 1.54 16 39 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 40 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.11 2.94 5.95 -51.93 -0.31 2.63 16 42 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.05 1.28 7.79 -51.93 -0.40 0.88 16 44 H 0.03 0.70 6.06 -51.93 -0.31 0.38 16 45 H 0.15 2.63 7.23 -52.49 -0.38 2.25 16 LS Contribution 374.99 15.07 5.65 5.65 Total: -1.00 -33.03 374.99 -8.89 -41.92 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -6.55 Total: 2.30 kcal Atomic # 6 Polarization: -2.38 SS G_CDS: -2.72 Total: -5.10 kcal Atomic # 7 Polarization: -31.13 SS G_CDS: 0.29 Total: -30.84 kcal Atomic # 8 Polarization: -29.24 SS G_CDS: -0.54 Total: -29.78 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.03 -8.89 -41.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188009877.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.711 kcal (2) G-P(sol) polarization free energy of solvation -33.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds