Wall clock time and date at job start Tue Mar 31 2020 12:01:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53006 * 109.47132 * 2 1 4 4 N 1.46495 * 109.46915 * 179.97438 * 3 2 1 5 5 C 1.34779 * 119.99717 * 179.97438 * 4 3 2 6 6 O 1.21553 * 119.99837 * 0.02562 * 5 4 3 7 7 C 1.47865 * 120.00042 * 180.02562 * 5 4 3 8 8 C 1.39708 * 120.07114 * 359.97438 * 7 5 4 9 9 C 1.38057 * 120.15948 * 180.02562 * 8 7 5 10 10 C 1.38094 * 120.29882 * 359.71844 * 9 8 7 11 11 C 1.39716 * 120.13793 * 0.55314 * 10 9 8 12 12 C 1.47741 * 120.07875 * 179.71805 * 11 10 9 13 13 O 1.21470 * 119.99611 * 179.73088 * 12 11 10 14 14 O 1.34702 * 120.00079 * 359.72829 * 12 11 10 15 15 C 1.45200 * 117.00095 * 179.97438 * 14 12 11 16 16 H 1.09001 * 109.47321 * 329.99982 * 15 14 12 17 17 C 1.50706 * 109.46954 * 210.00431 * 15 14 12 18 18 H 1.07995 * 120.00167 * 359.72237 * 17 15 14 19 19 C 1.37879 * 119.99394 * 179.97438 * 17 15 14 20 20 N 1.31514 * 120.00338 * 0.02562 * 19 17 15 21 21 Si 1.86800 * 119.99424 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47474 * 90.00322 * 21 19 17 23 23 H 1.48507 * 109.46754 * 210.00056 * 21 19 17 24 24 H 1.48498 * 109.47278 * 329.99887 * 21 19 17 25 25 C 1.52997 * 109.46978 * 90.00481 * 15 14 12 26 26 C 1.53001 * 109.46997 * 294.99673 * 25 15 14 27 27 C 1.39283 * 120.07071 * 179.97438 * 7 5 4 28 28 H 1.08996 * 109.46796 * 60.00373 * 1 2 3 29 29 H 1.09003 * 109.46995 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47214 * 300.00290 * 1 2 3 31 31 H 1.08997 * 109.47405 * 240.00133 * 2 1 3 32 32 H 1.08996 * 109.47299 * 119.99789 * 2 1 3 33 33 H 1.08997 * 109.46867 * 59.99804 * 3 2 1 34 34 H 1.08996 * 109.46857 * 300.00060 * 3 2 1 35 35 H 0.96997 * 120.00598 * 0.02562 * 4 3 2 36 36 H 1.08002 * 119.92288 * 0.04250 * 8 7 5 37 37 H 1.08001 * 119.85561 * 179.97438 * 9 8 7 38 38 H 1.07998 * 119.93069 * 180.30378 * 10 9 8 39 39 H 0.96996 * 119.99730 * 179.97438 * 20 19 17 40 40 H 1.08993 * 109.47322 * 54.99974 * 25 15 14 41 41 H 1.09002 * 109.47196 * 175.00098 * 25 15 14 42 42 H 1.08996 * 109.46972 * 179.97438 * 26 25 15 43 43 H 1.08993 * 109.47331 * 300.00296 * 26 25 15 44 44 H 1.09001 * 109.46791 * 60.00740 * 26 25 15 45 45 H 1.08001 * 120.14750 * 0.02562 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1789 2.6097 0.0002 6 8 3.5711 3.6624 -0.0002 7 6 5.6576 2.6097 0.0003 8 6 6.3576 1.4007 0.0013 9 6 7.7382 1.3986 0.0019 10 6 8.4367 2.5899 -0.0044 11 6 7.7493 3.8062 0.0003 12 6 8.4979 5.0799 -0.0002 13 8 7.8987 6.1365 -0.0010 14 8 9.8449 5.0694 0.0005 15 6 10.5142 6.3579 -0.0006 16 1 9.8921 7.0901 -0.5155 17 6 11.8380 6.2358 -0.7104 18 1 12.1475 5.2839 -1.1158 19 6 12.6562 7.3383 -0.8376 20 7 12.2816 8.4962 -0.3391 21 14 14.2967 7.1870 -1.7180 22 1 14.1103 7.4682 -3.1642 23 1 15.2582 8.1625 -1.1441 24 1 14.8260 5.8103 -1.5456 25 6 10.7487 6.8119 1.4415 26 6 9.4016 7.0561 2.1247 27 6 6.3554 3.8151 -0.0007 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 1.6767 1.9563 0.8899 34 1 1.6767 1.9563 -0.8900 35 1 3.9901 0.6025 0.0006 36 1 5.8175 0.4654 0.0013 37 1 8.2744 0.4611 0.0031 38 1 9.5166 2.5813 -0.0089 39 1 12.8575 9.2716 -0.4283 40 1 11.2951 6.0388 1.9815 41 1 11.3289 7.7347 1.4421 42 1 9.5687 7.3791 3.1522 43 1 8.8552 7.8292 1.5847 44 1 8.8215 6.1333 2.1242 45 1 5.8190 4.7525 -0.0011 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188009877.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:19 Heat of formation + Delta-G solvation = -136.003344 kcal Electronic energy + Delta-G solvation = -25998.258160 eV Core-core repulsion = 22172.296320 eV Total energy + Delta-G solvation = -3825.961841 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.73128 -41.05075 -39.30161 -37.61224 -36.86460 -35.53965 -33.97463 -33.40087 -32.27909 -32.19498 -29.36705 -27.48304 -25.92085 -24.98226 -24.37495 -22.66390 -22.45454 -21.92061 -21.09169 -19.55444 -18.63511 -18.23533 -17.44568 -17.15122 -17.11736 -16.96061 -16.79207 -16.40956 -15.64051 -15.52717 -15.28645 -14.89289 -14.82238 -14.75392 -14.22407 -13.85522 -13.66434 -13.45406 -13.35073 -13.31450 -13.12840 -12.99698 -12.91960 -12.81827 -12.62713 -12.46069 -12.13445 -12.02505 -11.79096 -11.73425 -11.54450 -11.38195 -11.16719 -10.84690 -10.55380 -10.38173 -10.18734 -10.02044 -8.27724 -6.45051 -0.49109 -0.12356 1.38709 1.41990 1.44169 1.55462 1.81582 1.89077 2.11037 2.41335 2.76202 3.02044 3.54442 3.69694 3.78146 3.92072 3.98968 4.07570 4.09528 4.27237 4.33513 4.35483 4.37572 4.47253 4.61075 4.67191 4.76412 4.79986 4.82040 4.88705 5.02227 5.08037 5.17301 5.17720 5.19784 5.23485 5.26663 5.28686 5.35014 5.45786 5.49925 5.63863 5.68183 5.93028 6.07309 6.43821 6.59241 6.91212 7.10249 7.25840 8.79377 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.028751 B = 0.002344 C = 0.002255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.649616 B =11944.507102 C =12413.858662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C 0.113 3.887 4 N -0.706 5.706 5 C 0.558 3.442 6 O -0.584 6.584 7 C -0.157 4.157 8 C -0.032 4.032 9 C -0.118 4.118 10 C -0.037 4.037 11 C -0.145 4.145 12 C 0.488 3.512 13 O -0.546 6.546 14 O -0.351 6.351 15 C 0.224 3.776 16 H 0.003 0.997 17 C -0.547 4.547 18 H 0.071 0.929 19 C 0.015 3.985 20 N -0.916 5.916 21 Si 0.984 3.016 22 H -0.274 1.274 23 H -0.276 1.276 24 H -0.259 1.259 25 C -0.128 4.128 26 C -0.131 4.131 27 C -0.020 4.020 28 H 0.053 0.947 29 H 0.072 0.928 30 H 0.054 0.946 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.419 0.581 36 H 0.185 0.815 37 H 0.188 0.812 38 H 0.148 0.852 39 H 0.270 0.730 40 H 0.050 0.950 41 H 0.088 0.912 42 H 0.063 0.937 43 H 0.032 0.968 44 H 0.032 0.968 45 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.773 -24.776 1.853 29.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.010 4.010 4 N -0.359 5.359 5 C 0.346 3.654 6 O -0.465 6.465 7 C -0.161 4.161 8 C -0.050 4.050 9 C -0.135 4.135 10 C -0.055 4.055 11 C -0.146 4.146 12 C 0.335 3.665 13 O -0.438 6.438 14 O -0.267 6.267 15 C 0.171 3.829 16 H 0.021 0.979 17 C -0.585 4.585 18 H 0.089 0.911 19 C -0.185 4.185 20 N -0.554 5.554 21 Si 0.807 3.193 22 H -0.200 1.200 23 H -0.201 1.201 24 H -0.183 1.183 25 C -0.166 4.166 26 C -0.189 4.189 27 C -0.039 4.039 28 H 0.072 0.928 29 H 0.091 0.909 30 H 0.073 0.927 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.258 0.742 36 H 0.202 0.798 37 H 0.205 0.795 38 H 0.166 0.834 39 H 0.080 0.920 40 H 0.069 0.931 41 H 0.106 0.894 42 H 0.082 0.918 43 H 0.051 0.949 44 H 0.051 0.949 45 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -16.313 -23.542 1.882 28.704 hybrid contribution 0.797 1.095 -0.407 1.414 sum -15.516 -22.448 1.475 27.328 Atomic orbital electron populations 1.21707 0.94376 1.02876 1.02080 1.21698 0.97054 0.93383 1.04158 1.21555 0.78399 0.99412 1.01624 1.45727 1.07913 1.07991 1.74246 1.18364 0.87230 0.84086 0.75716 1.90793 1.70703 1.33284 1.51716 1.19776 0.92683 0.94273 1.09324 1.22006 0.94828 0.97011 0.91141 1.21612 0.93858 0.98680 0.99353 1.22006 1.01970 0.90953 0.90615 1.19166 0.92895 0.91454 1.11100 1.21772 0.82418 0.90016 0.72314 1.90771 1.70670 1.34717 1.47686 1.86484 1.18832 1.39087 1.82309 1.20445 0.90521 0.77175 0.94737 0.97911 1.21313 1.02176 0.97316 1.37682 0.91128 1.25856 1.02513 0.94147 0.95969 1.70025 1.39174 1.00982 1.45171 0.85168 0.77298 0.78715 0.78138 1.19977 1.20135 1.18324 1.21865 0.96895 1.02567 0.95270 1.21724 0.97298 0.99837 0.99993 1.21169 0.91984 0.98995 0.91792 0.92755 0.90870 0.92717 0.89804 0.89765 0.92519 0.92563 0.74184 0.79829 0.79511 0.83412 0.92038 0.93096 0.89376 0.91785 0.94854 0.94859 0.86804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.91 71.98 0.71 -0.28 16 2 C -0.13 -0.75 6.05 30.60 0.19 -0.57 16 3 C 0.11 1.53 5.67 86.38 0.49 2.02 16 4 N -0.71 -9.97 5.51 -465.96 -2.57 -12.53 16 5 C 0.56 13.80 7.77 86.79 0.67 14.48 16 6 O -0.58 -20.66 16.34 -3.88 -0.06 -20.72 16 7 C -0.16 -3.72 5.87 -20.12 -0.12 -3.84 16 8 C -0.03 -0.42 9.54 22.58 0.22 -0.20 16 9 C -0.12 -1.67 10.02 22.19 0.22 -1.45 16 10 C -0.04 -0.92 9.61 22.59 0.22 -0.70 16 11 C -0.14 -5.02 5.87 -20.13 -0.12 -5.13 16 12 C 0.49 22.41 6.35 70.33 0.45 22.86 16 13 O -0.55 -28.66 13.52 19.93 0.27 -28.39 16 14 O -0.35 -17.27 9.05 -56.12 -0.51 -17.78 16 15 C 0.22 12.55 2.25 29.85 0.07 12.62 16 16 H 0.00 0.20 7.16 -2.39 -0.02 0.18 16 17 C -0.55 -31.19 8.90 25.60 0.23 -30.96 16 18 H 0.07 3.88 7.81 -2.91 -0.02 3.86 16 19 C 0.01 0.82 5.29 84.66 0.45 1.27 16 20 N -0.92 -53.16 11.29 21.45 0.24 -52.92 16 21 Si 0.98 42.92 29.54 68.60 2.03 44.95 16 22 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 23 H -0.28 -11.63 7.11 99.48 0.71 -10.93 16 24 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 25 C -0.13 -6.63 5.49 30.59 0.17 -6.46 16 26 C -0.13 -6.13 8.56 71.98 0.62 -5.51 16 27 C -0.02 -0.66 9.14 22.80 0.21 -0.45 16 28 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 29 H 0.07 0.32 8.14 -2.39 -0.02 0.30 16 30 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.08 0.32 8.14 -2.39 -0.02 0.30 16 32 H 0.08 0.31 8.14 -2.39 -0.02 0.29 16 33 H 0.06 0.93 8.14 -2.39 -0.02 0.92 16 34 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.42 2.31 6.50 -92.71 -0.60 1.70 16 36 H 0.18 0.37 6.39 -2.91 -0.02 0.35 16 37 H 0.19 0.96 8.06 -2.91 -0.02 0.94 16 38 H 0.15 3.66 7.60 -2.91 -0.02 3.63 16 39 H 0.27 14.68 8.31 -92.71 -0.77 13.91 16 40 H 0.05 2.49 8.14 -2.39 -0.02 2.47 16 41 H 0.09 4.96 5.95 -2.39 -0.01 4.94 16 42 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 43 H 0.03 1.66 7.79 -2.39 -0.02 1.64 16 44 H 0.03 1.51 6.06 -2.39 -0.01 1.49 16 45 H 0.11 4.52 7.23 -2.91 -0.02 4.49 16 Total: -1.00 -80.50 374.99 4.47 -76.04 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: 0.40 Total: 13.65 kcal Atomic # 6 Polarization: -6.96 SS G_CDS: 4.66 Total: -2.30 kcal Atomic # 7 Polarization: -63.13 SS G_CDS: -2.32 Total: -65.45 kcal Atomic # 8 Polarization: -66.59 SS G_CDS: -0.30 Total: -66.89 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Total: -80.50 4.47 -76.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188009877.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.967 kcal (2) G-P(sol) polarization free energy of solvation -80.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds