Wall clock time and date at job start Tue Mar 31 2020 12:01:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47162 * 2 1 4 4 N 1.46506 * 109.47112 * 179.97438 * 3 2 1 5 5 C 1.34773 * 119.99849 * 179.97438 * 4 3 2 6 6 O 1.21556 * 120.00421 * 0.02562 * 5 4 3 7 7 C 1.47866 * 119.99886 * 180.02562 * 5 4 3 8 8 C 1.39707 * 120.06937 * 359.97438 * 7 5 4 9 9 C 1.38070 * 120.15265 * 180.02562 * 8 7 5 10 10 C 1.38088 * 120.30315 * 359.76580 * 9 8 7 11 11 C 1.39712 * 120.13501 * 0.51575 * 10 9 8 12 12 C 1.47742 * 120.07749 * 179.74234 * 11 10 9 13 13 O 1.21471 * 120.00229 * 179.45025 * 12 11 10 14 14 O 1.34715 * 119.99916 * 359.72086 * 12 11 10 15 15 C 1.45199 * 117.00094 * 179.72676 * 14 12 11 16 16 H 1.08997 * 109.46872 * 30.00406 * 15 14 12 17 17 C 1.50704 * 109.46929 * 149.99871 * 15 14 12 18 18 H 1.07990 * 119.99757 * 0.02562 * 17 15 14 19 19 C 1.37877 * 119.99796 * 180.02562 * 17 15 14 20 20 N 1.31509 * 120.00000 * 0.02562 * 19 17 15 21 21 Si 1.86801 * 119.99763 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47055 * 90.00108 * 21 19 17 23 23 H 1.48498 * 109.46668 * 209.99884 * 21 19 17 24 24 H 1.48497 * 109.47280 * 329.99588 * 21 19 17 25 25 C 1.53001 * 109.47158 * 269.99955 * 15 14 12 26 26 C 1.53004 * 109.46578 * 65.00107 * 25 15 14 27 27 C 1.39282 * 120.06911 * 180.02562 * 7 5 4 28 28 H 1.09003 * 109.47327 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47196 * 300.00030 * 1 2 3 30 30 H 1.08997 * 109.47255 * 60.00401 * 1 2 3 31 31 H 1.09004 * 109.47097 * 239.99489 * 2 1 3 32 32 H 1.09001 * 109.47158 * 120.00083 * 2 1 3 33 33 H 1.08999 * 109.47090 * 59.99905 * 3 2 1 34 34 H 1.09006 * 109.47243 * 299.99349 * 3 2 1 35 35 H 0.96999 * 119.99693 * 359.97438 * 4 3 2 36 36 H 1.08000 * 119.92790 * 0.02791 * 8 7 5 37 37 H 1.08001 * 119.84258 * 180.02562 * 9 8 7 38 38 H 1.07995 * 119.92764 * 180.25273 * 10 9 8 39 39 H 0.96999 * 119.99995 * 179.97438 * 20 19 17 40 40 H 1.08997 * 109.46905 * 184.99548 * 25 15 14 41 41 H 1.08996 * 109.46917 * 305.00400 * 25 15 14 42 42 H 1.08997 * 109.47046 * 299.99354 * 26 25 15 43 43 H 1.08996 * 109.47256 * 60.00501 * 26 25 15 44 44 H 1.09003 * 109.46186 * 180.02562 * 26 25 15 45 45 H 1.08000 * 120.15261 * 0.02562 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1789 2.6096 0.0002 6 8 3.5711 3.6623 -0.0002 7 6 5.6575 2.6096 0.0003 8 6 6.3575 1.4006 0.0013 9 6 7.7382 1.3985 0.0019 10 6 8.4367 2.5897 -0.0034 11 6 7.7492 3.8060 0.0015 12 6 8.4979 5.0797 0.0015 13 8 7.8988 6.1364 -0.0043 14 8 9.8450 5.0692 0.0026 15 6 10.5143 6.3577 -0.0036 16 1 9.8916 7.0929 0.5061 17 6 11.8373 6.2400 0.7085 18 1 12.1444 5.2916 1.1236 19 6 12.6554 7.3431 0.8298 20 7 12.2810 8.4982 0.3247 21 14 14.2956 7.1970 1.7118 22 1 15.3520 6.8303 0.7347 23 1 14.6353 8.4972 2.3435 24 1 14.2032 6.1474 2.7582 25 6 10.7504 6.8029 -1.4482 26 6 9.4041 7.0427 -2.1344 27 6 6.3554 3.8150 0.0004 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6767 1.9563 -0.8901 35 1 3.9900 0.6024 0.0013 36 1 5.8175 0.4653 0.0016 37 1 8.2743 0.4610 0.0022 38 1 9.5166 2.5811 -0.0071 39 1 12.8564 9.2743 0.4104 40 1 11.3305 7.7256 -1.4538 41 1 11.2974 6.0264 -1.9828 42 1 8.8239 6.1200 -2.1288 43 1 8.8570 7.8193 -1.5998 44 1 9.5724 7.3594 -3.1637 45 1 5.8190 4.7524 0.0008 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188009901.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:22 Heat of formation + Delta-G solvation = -115.638631 kcal Electronic energy + Delta-G solvation = -25997.947550 eV Core-core repulsion = 22172.868789 eV Total energy + Delta-G solvation = -3825.078760 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.49898 -39.60263 -38.15577 -36.12225 -35.75803 -33.55956 -33.18279 -31.59663 -31.21396 -31.05638 -27.36901 -26.77105 -24.44987 -23.67861 -22.90786 -22.04865 -21.27234 -20.42723 -19.50683 -18.27358 -16.75100 -16.70922 -16.41725 -16.14677 -16.08952 -15.48231 -15.31198 -14.75359 -14.70086 -14.46710 -14.21146 -13.89890 -13.36525 -13.15123 -12.96641 -12.83807 -12.58425 -12.50632 -12.09212 -12.00631 -11.60919 -11.56844 -11.44415 -11.35916 -11.22297 -11.18622 -10.98069 -10.64565 -10.29617 -10.17254 -9.82447 -9.67945 -9.44973 -9.38107 -9.15089 -9.09342 -8.82056 -8.46087 -6.19102 -4.26460 0.55781 0.98044 2.53142 2.80895 3.20098 3.23951 3.29338 3.32674 3.57349 3.90967 4.30897 4.33904 4.45465 4.50222 4.64713 4.71411 4.77231 5.12648 5.14320 5.16554 5.17002 5.20229 5.26887 5.40694 5.55346 5.65024 5.70165 5.74261 5.76854 6.05383 6.12342 6.17379 6.24543 6.29825 6.34488 6.47497 6.63675 6.87350 6.97076 7.17139 7.18296 7.23127 7.60406 7.72899 7.92193 7.97114 8.14086 8.59301 8.86048 9.38575 10.87688 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.028788 B = 0.002343 C = 0.002255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.381277 B =11947.492904 C =12413.781602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.136 4.136 3 C 0.117 3.883 4 N -0.731 5.731 5 C 0.562 3.438 6 O -0.530 6.530 7 C -0.154 4.154 8 C -0.065 4.065 9 C -0.140 4.140 10 C -0.036 4.036 11 C -0.117 4.117 12 C 0.494 3.506 13 O -0.506 6.506 14 O -0.350 6.350 15 C 0.222 3.778 16 H 0.049 0.951 17 C -0.521 4.521 18 H 0.069 0.931 19 C 0.063 3.937 20 N -0.887 5.887 21 Si 0.911 3.089 22 H -0.278 1.278 23 H -0.284 1.284 24 H -0.272 1.272 25 C -0.135 4.135 26 C -0.144 4.144 27 C -0.001 4.001 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.399 0.601 36 H 0.127 0.873 37 H 0.137 0.863 38 H 0.148 0.852 39 H 0.267 0.733 40 H 0.109 0.891 41 H 0.042 0.958 42 H 0.031 0.969 43 H 0.054 0.946 44 H 0.033 0.967 45 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.198 -19.913 -1.773 25.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.174 4.174 3 C -0.006 4.006 4 N -0.384 5.384 5 C 0.350 3.650 6 O -0.407 6.407 7 C -0.157 4.157 8 C -0.083 4.083 9 C -0.158 4.158 10 C -0.054 4.054 11 C -0.118 4.118 12 C 0.338 3.662 13 O -0.397 6.397 14 O -0.266 6.266 15 C 0.170 3.830 16 H 0.066 0.934 17 C -0.559 4.559 18 H 0.087 0.913 19 C -0.140 4.140 20 N -0.524 5.524 21 Si 0.738 3.262 22 H -0.204 1.204 23 H -0.210 1.210 24 H -0.196 1.196 25 C -0.173 4.173 26 C -0.201 4.201 27 C -0.020 4.020 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.235 0.765 36 H 0.145 0.855 37 H 0.154 0.846 38 H 0.166 0.834 39 H 0.077 0.923 40 H 0.127 0.873 41 H 0.061 0.939 42 H 0.050 0.950 43 H 0.073 0.927 44 H 0.053 0.947 45 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -16.726 -18.602 -1.792 25.080 hybrid contribution 1.084 -0.320 0.371 1.190 sum -15.641 -18.922 -1.421 24.591 Atomic orbital electron populations 1.21678 0.94435 1.02202 1.02471 1.21744 0.97126 0.95765 1.02784 1.21436 0.79153 0.97236 1.02772 1.45892 1.07450 1.08539 1.76513 1.18227 0.87080 0.83687 0.76040 1.90811 1.69812 1.31087 1.49001 1.19717 0.92663 0.94137 1.09177 1.21423 0.94785 0.96600 0.95538 1.21101 0.93685 0.98548 1.02439 1.21853 1.01737 0.90968 0.90858 1.19448 0.92991 0.92617 1.06721 1.20831 0.83260 0.88319 0.73827 1.90803 1.70427 1.32701 1.45726 1.86510 1.17405 1.40960 1.81732 1.20735 0.91269 0.76771 0.94275 0.93357 1.21019 1.01575 0.96994 1.36360 0.91298 1.24888 0.98720 0.94776 0.95584 1.69889 1.37645 1.00334 1.44564 0.86278 0.82623 0.77616 0.79641 1.20371 1.20975 1.19646 1.22025 0.95997 1.03524 0.95791 1.21872 0.98911 1.00428 0.98919 1.21398 0.92295 0.98635 0.89713 0.92140 0.92265 0.92265 0.91234 0.91228 0.91259 0.91257 0.76519 0.85496 0.84557 0.83418 0.92349 0.87270 0.93940 0.94965 0.92723 0.94749 0.83208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.65 9.91 37.16 0.37 -0.28 16 2 C -0.14 -0.63 6.05 -26.73 -0.16 -0.79 16 3 C 0.12 0.89 5.67 -4.04 -0.02 0.86 16 4 N -0.73 -6.18 5.51 -61.24 -0.34 -6.52 16 5 C 0.56 7.17 7.77 -12.32 -0.10 7.07 16 6 O -0.53 -8.94 16.34 5.32 0.09 -8.85 16 7 C -0.15 -1.93 5.87 -105.02 -0.62 -2.54 16 8 C -0.06 -0.59 9.54 -39.09 -0.37 -0.96 16 9 C -0.14 -1.36 10.02 -39.70 -0.40 -1.75 16 10 C -0.04 -0.48 9.61 -39.09 -0.38 -0.85 16 11 C -0.12 -1.95 5.87 -105.03 -0.62 -2.57 16 12 C 0.49 10.59 6.35 34.62 0.22 10.81 16 13 O -0.51 -12.12 13.52 -19.24 -0.26 -12.38 16 14 O -0.35 -8.18 9.05 -40.53 -0.37 -8.55 16 15 C 0.22 5.87 2.25 -27.88 -0.06 5.81 16 16 H 0.05 1.43 7.16 -51.93 -0.37 1.05 16 17 C -0.52 -14.41 8.90 -34.44 -0.31 -14.71 16 18 H 0.07 1.86 7.81 -52.49 -0.41 1.45 16 19 C 0.06 1.71 5.29 -17.82 -0.09 1.61 16 20 N -0.89 -24.95 11.30 55.43 0.63 -24.32 16 21 Si 0.91 20.87 29.54 -169.99 -5.02 15.85 16 22 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 23 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 24 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 25 C -0.14 -3.36 5.49 -26.73 -0.15 -3.51 16 26 C -0.14 -3.22 8.56 37.16 0.32 -2.90 16 27 C 0.00 -0.02 9.14 -38.77 -0.35 -0.38 16 28 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 29 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 32 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.40 2.14 6.50 -40.82 -0.27 1.87 16 36 H 0.13 0.64 6.39 -52.49 -0.34 0.31 16 37 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 38 H 0.15 1.94 7.60 -52.49 -0.40 1.54 16 39 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 40 H 0.11 2.94 5.96 -51.93 -0.31 2.63 16 41 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.03 0.70 6.06 -51.93 -0.31 0.38 16 43 H 0.05 1.28 7.79 -51.93 -0.40 0.88 16 44 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.15 2.63 7.23 -52.49 -0.38 2.25 16 LS Contribution 374.99 15.07 5.65 5.65 Total: -1.00 -33.03 374.99 -8.89 -41.92 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -6.55 Total: 2.30 kcal Atomic # 6 Polarization: -2.38 SS G_CDS: -2.72 Total: -5.09 kcal Atomic # 7 Polarization: -31.14 SS G_CDS: 0.29 Total: -30.85 kcal Atomic # 8 Polarization: -29.24 SS G_CDS: -0.54 Total: -29.78 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.03 -8.89 -41.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188009901.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.717 kcal (2) G-P(sol) polarization free energy of solvation -33.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds