Wall clock time and date at job start Tue Mar 31 2020 12:01:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47162 * 2 1 4 4 N 1.46506 * 109.47112 * 179.97438 * 3 2 1 5 5 C 1.34773 * 119.99849 * 179.97438 * 4 3 2 6 6 O 1.21556 * 120.00421 * 0.02562 * 5 4 3 7 7 C 1.47866 * 119.99886 * 180.02562 * 5 4 3 8 8 C 1.39707 * 120.06937 * 359.97438 * 7 5 4 9 9 C 1.38070 * 120.15265 * 180.02562 * 8 7 5 10 10 C 1.38088 * 120.30315 * 359.76580 * 9 8 7 11 11 C 1.39712 * 120.13501 * 0.51575 * 10 9 8 12 12 C 1.47742 * 120.07749 * 179.74234 * 11 10 9 13 13 O 1.21471 * 120.00229 * 179.45025 * 12 11 10 14 14 O 1.34715 * 119.99916 * 359.72086 * 12 11 10 15 15 C 1.45199 * 117.00094 * 179.72676 * 14 12 11 16 16 H 1.08997 * 109.46872 * 30.00406 * 15 14 12 17 17 C 1.50704 * 109.46929 * 149.99871 * 15 14 12 18 18 H 1.07990 * 119.99757 * 0.02562 * 17 15 14 19 19 C 1.37877 * 119.99796 * 180.02562 * 17 15 14 20 20 N 1.31509 * 120.00000 * 0.02562 * 19 17 15 21 21 Si 1.86801 * 119.99763 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47055 * 90.00108 * 21 19 17 23 23 H 1.48498 * 109.46668 * 209.99884 * 21 19 17 24 24 H 1.48497 * 109.47280 * 329.99588 * 21 19 17 25 25 C 1.53001 * 109.47158 * 269.99955 * 15 14 12 26 26 C 1.53004 * 109.46578 * 65.00107 * 25 15 14 27 27 C 1.39282 * 120.06911 * 180.02562 * 7 5 4 28 28 H 1.09003 * 109.47327 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47196 * 300.00030 * 1 2 3 30 30 H 1.08997 * 109.47255 * 60.00401 * 1 2 3 31 31 H 1.09004 * 109.47097 * 239.99489 * 2 1 3 32 32 H 1.09001 * 109.47158 * 120.00083 * 2 1 3 33 33 H 1.08999 * 109.47090 * 59.99905 * 3 2 1 34 34 H 1.09006 * 109.47243 * 299.99349 * 3 2 1 35 35 H 0.96999 * 119.99693 * 359.97438 * 4 3 2 36 36 H 1.08000 * 119.92790 * 0.02791 * 8 7 5 37 37 H 1.08001 * 119.84258 * 180.02562 * 9 8 7 38 38 H 1.07995 * 119.92764 * 180.25273 * 10 9 8 39 39 H 0.96999 * 119.99995 * 179.97438 * 20 19 17 40 40 H 1.08997 * 109.46905 * 184.99548 * 25 15 14 41 41 H 1.08996 * 109.46917 * 305.00400 * 25 15 14 42 42 H 1.08997 * 109.47046 * 299.99354 * 26 25 15 43 43 H 1.08996 * 109.47256 * 60.00501 * 26 25 15 44 44 H 1.09003 * 109.46186 * 180.02562 * 26 25 15 45 45 H 1.08000 * 120.15261 * 0.02562 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1789 2.6096 0.0002 6 8 3.5711 3.6623 -0.0002 7 6 5.6575 2.6096 0.0003 8 6 6.3575 1.4006 0.0013 9 6 7.7382 1.3985 0.0019 10 6 8.4367 2.5897 -0.0034 11 6 7.7492 3.8060 0.0015 12 6 8.4979 5.0797 0.0015 13 8 7.8988 6.1364 -0.0043 14 8 9.8450 5.0692 0.0026 15 6 10.5143 6.3577 -0.0036 16 1 9.8916 7.0929 0.5061 17 6 11.8373 6.2400 0.7085 18 1 12.1444 5.2916 1.1236 19 6 12.6554 7.3431 0.8298 20 7 12.2810 8.4982 0.3247 21 14 14.2956 7.1970 1.7118 22 1 15.3520 6.8303 0.7347 23 1 14.6353 8.4972 2.3435 24 1 14.2032 6.1474 2.7582 25 6 10.7504 6.8029 -1.4482 26 6 9.4041 7.0427 -2.1344 27 6 6.3554 3.8150 0.0004 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6767 1.9563 -0.8901 35 1 3.9900 0.6024 0.0013 36 1 5.8175 0.4653 0.0016 37 1 8.2743 0.4610 0.0022 38 1 9.5166 2.5811 -0.0071 39 1 12.8564 9.2743 0.4104 40 1 11.3305 7.7256 -1.4538 41 1 11.2974 6.0264 -1.9828 42 1 8.8239 6.1200 -2.1288 43 1 8.8570 7.8193 -1.5998 44 1 9.5724 7.3594 -3.1637 45 1 5.8190 4.7524 0.0008 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188009901.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:21 Heat of formation + Delta-G solvation = -136.023270 kcal Electronic energy + Delta-G solvation = -25998.831494 eV Core-core repulsion = 22172.868789 eV Total energy + Delta-G solvation = -3825.962705 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.73071 -41.05002 -39.30108 -37.61198 -36.86450 -35.53935 -33.97524 -33.40112 -32.27971 -32.19479 -29.36685 -27.48317 -25.92092 -24.98210 -24.37491 -22.66359 -22.45436 -21.92090 -21.09166 -19.55412 -18.63551 -18.23450 -17.44554 -17.15461 -17.11664 -16.95744 -16.79199 -16.41046 -15.63963 -15.52720 -15.28628 -14.89401 -14.82277 -14.75386 -14.22349 -13.85519 -13.66587 -13.45128 -13.35148 -13.31137 -13.12968 -12.99814 -12.92001 -12.83521 -12.60035 -12.45689 -12.14975 -12.02522 -11.80200 -11.73385 -11.54131 -11.37347 -11.16696 -10.85795 -10.54629 -10.38187 -10.18682 -10.02083 -8.27718 -6.45063 -0.49116 -0.12366 1.38687 1.41983 1.44459 1.55185 1.81623 1.89051 2.11026 2.41330 2.76191 3.02012 3.54422 3.69686 3.78160 3.92090 3.98961 4.07556 4.09477 4.27224 4.33492 4.35433 4.37560 4.47238 4.61062 4.67175 4.76388 4.80007 4.82037 4.88695 5.02181 5.08014 5.17291 5.17628 5.19775 5.23471 5.26646 5.28637 5.34980 5.45770 5.49937 5.63911 5.68177 5.93002 6.07307 6.43832 6.59211 6.91164 7.10229 7.25853 8.79375 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.028788 B = 0.002343 C = 0.002255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.381277 B =11947.492904 C =12413.781602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C 0.113 3.887 4 N -0.706 5.706 5 C 0.558 3.442 6 O -0.584 6.584 7 C -0.157 4.157 8 C -0.032 4.032 9 C -0.118 4.118 10 C -0.037 4.037 11 C -0.145 4.145 12 C 0.488 3.512 13 O -0.546 6.546 14 O -0.351 6.351 15 C 0.224 3.776 16 H 0.003 0.997 17 C -0.548 4.548 18 H 0.070 0.930 19 C 0.015 3.985 20 N -0.916 5.916 21 Si 0.984 3.016 22 H -0.265 1.265 23 H -0.280 1.280 24 H -0.264 1.264 25 C -0.128 4.128 26 C -0.131 4.131 27 C -0.020 4.020 28 H 0.072 0.928 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.419 0.581 36 H 0.185 0.815 37 H 0.188 0.812 38 H 0.148 0.852 39 H 0.270 0.730 40 H 0.088 0.912 41 H 0.050 0.950 42 H 0.032 0.968 43 H 0.032 0.968 44 H 0.063 0.937 45 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.771 -24.782 -1.827 29.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.010 4.010 4 N -0.359 5.359 5 C 0.346 3.654 6 O -0.465 6.465 7 C -0.161 4.161 8 C -0.050 4.050 9 C -0.135 4.135 10 C -0.055 4.055 11 C -0.146 4.146 12 C 0.335 3.665 13 O -0.438 6.438 14 O -0.267 6.267 15 C 0.171 3.829 16 H 0.021 0.979 17 C -0.585 4.585 18 H 0.088 0.912 19 C -0.185 4.185 20 N -0.553 5.553 21 Si 0.807 3.193 22 H -0.190 1.190 23 H -0.206 1.206 24 H -0.188 1.188 25 C -0.166 4.166 26 C -0.189 4.189 27 C -0.039 4.039 28 H 0.091 0.909 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.258 0.742 36 H 0.202 0.798 37 H 0.205 0.795 38 H 0.166 0.834 39 H 0.080 0.920 40 H 0.106 0.894 41 H 0.069 0.931 42 H 0.051 0.949 43 H 0.051 0.949 44 H 0.082 0.918 45 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -16.314 -23.546 -1.854 28.705 hybrid contribution 0.804 1.090 0.391 1.410 sum -15.510 -22.456 -1.463 27.330 Atomic orbital electron populations 1.21705 0.94376 1.02877 1.02080 1.21697 0.97055 0.93384 1.04160 1.21557 0.78396 0.99412 1.01625 1.45728 1.07916 1.07991 1.74241 1.18363 0.87230 0.84086 0.75717 1.90793 1.70711 1.33275 1.51720 1.19777 0.92684 0.94274 1.09322 1.22010 0.94828 0.97011 0.91141 1.21614 0.93858 0.98682 0.99351 1.22002 1.01972 0.90951 0.90621 1.19166 0.92895 0.91453 1.11099 1.21777 0.82417 0.90018 0.72311 1.90772 1.70676 1.34710 1.47681 1.86486 1.18832 1.39084 1.82315 1.20444 0.90516 0.77178 0.94737 0.97909 1.21309 1.02262 0.97503 1.37424 0.91152 1.25855 1.02501 0.94121 0.96000 1.70024 1.39069 1.01067 1.45190 0.85164 0.77735 0.77787 0.78614 1.19037 1.20555 1.18848 1.21866 0.96899 1.02575 0.95252 1.21726 0.97300 0.99838 0.99990 1.21169 0.91983 0.98995 0.91794 0.90870 0.92754 0.92718 0.89764 0.89802 0.92567 0.92511 0.74183 0.79826 0.79510 0.83406 0.92040 0.89379 0.93099 0.94854 0.94855 0.91785 0.86803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.91 71.98 0.71 -0.28 16 2 C -0.13 -0.75 6.05 30.59 0.19 -0.57 16 3 C 0.11 1.53 5.67 86.38 0.49 2.02 16 4 N -0.71 -9.97 5.51 -465.94 -2.57 -12.54 16 5 C 0.56 13.81 7.77 86.79 0.67 14.48 16 6 O -0.58 -20.66 16.34 -3.89 -0.06 -20.72 16 7 C -0.16 -3.72 5.87 -20.12 -0.12 -3.84 16 8 C -0.03 -0.42 9.54 22.58 0.22 -0.20 16 9 C -0.12 -1.67 10.02 22.19 0.22 -1.45 16 10 C -0.04 -0.92 9.61 22.59 0.22 -0.70 16 11 C -0.14 -5.02 5.87 -20.13 -0.12 -5.13 16 12 C 0.49 22.42 6.35 70.34 0.45 22.86 16 13 O -0.55 -28.66 13.52 19.93 0.27 -28.39 16 14 O -0.35 -17.28 9.05 -56.24 -0.51 -17.79 16 15 C 0.22 12.56 2.25 29.85 0.07 12.62 16 16 H 0.00 0.20 7.16 -2.39 -0.02 0.18 16 17 C -0.55 -31.21 8.90 25.60 0.23 -30.98 16 18 H 0.07 3.88 7.81 -2.92 -0.02 3.85 16 19 C 0.01 0.83 5.29 84.66 0.45 1.27 16 20 N -0.92 -53.16 11.30 21.45 0.24 -52.92 16 21 Si 0.98 42.93 29.54 68.60 2.03 44.96 16 22 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 23 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 24 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 25 C -0.13 -6.63 5.49 30.60 0.17 -6.46 16 26 C -0.13 -6.13 8.56 71.98 0.62 -5.51 16 27 C -0.02 -0.66 9.14 22.80 0.21 -0.45 16 28 H 0.07 0.32 8.14 -2.39 -0.02 0.30 16 29 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.08 0.31 8.14 -2.39 -0.02 0.29 16 32 H 0.08 0.31 8.14 -2.39 -0.02 0.30 16 33 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 35 H 0.42 2.31 6.50 -92.71 -0.60 1.70 16 36 H 0.18 0.37 6.39 -2.91 -0.02 0.35 16 37 H 0.19 0.96 8.06 -2.91 -0.02 0.93 16 38 H 0.15 3.66 7.60 -2.91 -0.02 3.63 16 39 H 0.27 14.68 8.31 -92.71 -0.77 13.91 16 40 H 0.09 4.95 5.96 -2.39 -0.01 4.94 16 41 H 0.05 2.49 8.14 -2.39 -0.02 2.47 16 42 H 0.03 1.51 6.06 -2.39 -0.01 1.50 16 43 H 0.03 1.66 7.79 -2.39 -0.02 1.64 16 44 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 45 H 0.11 4.52 7.23 -2.91 -0.02 4.50 16 Total: -1.00 -80.52 374.99 4.46 -76.06 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: 0.40 Total: 13.64 kcal Atomic # 6 Polarization: -6.97 SS G_CDS: 4.66 Total: -2.30 kcal Atomic # 7 Polarization: -63.13 SS G_CDS: -2.32 Total: -65.45 kcal Atomic # 8 Polarization: -66.60 SS G_CDS: -0.30 Total: -66.90 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Total: -80.52 4.46 -76.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188009901.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.966 kcal (2) G-P(sol) polarization free energy of solvation -80.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds