Wall clock time and date at job start Tue Mar 31 2020 13:31:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 110.78016 * 2 1 4 4 C 1.55548 * 110.78271 * 236.56817 * 2 1 3 5 5 C 1.54913 * 101.59986 * 277.24657 * 4 2 1 6 6 N 1.47430 * 104.82652 * 322.95335 * 5 4 2 7 7 C 1.34778 * 125.64225 * 204.16056 * 6 5 4 8 8 O 1.21286 * 119.99800 * 179.97438 * 7 6 5 9 9 C 1.50696 * 120.00164 * 359.96682 * 7 6 5 10 10 C 1.50702 * 109.47199 * 179.97438 * 9 7 6 11 11 C 1.38302 * 119.93066 * 269.72729 * 10 9 7 12 12 C 1.38095 * 120.06981 * 179.72788 * 11 10 9 13 13 C 1.38878 * 119.93164 * 0.56174 * 12 11 10 14 14 O 1.35746 * 120.07242 * 179.68921 * 13 12 11 15 15 C 1.34837 * 117.00514 * 174.48831 * 14 13 12 16 16 H 1.08001 * 119.99240 * 5.05333 * 15 14 13 17 17 C 1.38650 * 120.00477 * 185.05651 * 15 14 13 18 18 N 1.31548 * 120.00318 * 180.02562 * 17 15 14 19 19 Si 1.86803 * 119.99737 * 359.97438 * 17 15 14 20 20 H 1.48500 * 109.47047 * 89.99887 * 19 17 15 21 21 H 1.48504 * 109.47128 * 209.99977 * 19 17 15 22 22 H 1.48503 * 109.47283 * 329.99887 * 19 17 15 23 23 C 1.38881 * 119.86179 * 359.70864 * 13 12 11 24 24 C 1.38098 * 119.92856 * 359.97438 * 23 13 12 25 25 C 1.47022 * 108.70864 * 24.13000 * 6 5 4 26 26 H 1.08998 * 109.88074 * 239.52506 * 25 6 5 27 27 C 1.52999 * 109.88111 * 118.51033 * 25 6 5 28 28 O 1.42892 * 109.47142 * 66.72052 * 27 25 6 29 29 H 1.08998 * 109.46909 * 296.76940 * 1 2 3 30 30 H 1.08995 * 109.46927 * 56.76325 * 1 2 3 31 31 H 1.09000 * 109.47024 * 176.76852 * 1 2 3 32 32 H 1.08997 * 111.02916 * 159.15026 * 4 2 1 33 33 H 1.09002 * 110.99448 * 35.32580 * 4 2 1 34 34 H 1.08991 * 110.36383 * 204.11900 * 5 4 2 35 35 H 1.08993 * 110.45744 * 81.83604 * 5 4 2 36 36 H 1.09001 * 109.46805 * 299.99037 * 9 7 6 37 37 H 1.08997 * 109.47753 * 59.99362 * 9 7 6 38 38 H 1.08003 * 119.96471 * 359.96786 * 11 10 9 39 39 H 1.08004 * 120.03716 * 180.27422 * 12 11 10 40 40 H 0.96998 * 120.00501 * 180.02562 * 18 17 15 41 41 H 1.08004 * 120.03934 * 180.02562 * 23 13 12 42 42 H 1.08000 * 119.96691 * 180.02562 * 24 23 13 43 43 H 1.09001 * 109.46774 * 186.72041 * 27 25 6 44 44 H 1.08995 * 109.47499 * 306.71326 * 27 25 6 45 45 H 0.96701 * 114.00128 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9167 1.0191 0.0000 4 6 2.0819 -0.8012 -1.2136 5 6 2.0135 -2.2554 -0.6840 6 7 2.3708 -2.1544 0.7428 7 6 2.8835 -3.1474 1.4962 8 8 3.1414 -2.9506 2.6649 9 6 3.1362 -4.5022 0.8866 10 6 3.7076 -5.4249 1.9322 11 6 5.0773 -5.5087 2.1043 12 6 5.6038 -6.3491 3.0654 13 6 4.7568 -7.1192 3.8516 14 8 5.2715 -7.9510 4.7929 15 6 4.3934 -8.5831 5.5974 16 1 3.3322 -8.4808 5.4244 17 6 4.8526 -9.3644 6.6468 18 7 3.9959 -9.9816 7.4314 19 14 6.6880 -9.5418 6.9455 20 1 7.1449 -8.4722 7.8688 21 1 6.9651 -10.8695 7.5502 22 1 7.4133 -9.4246 5.6549 23 6 3.3820 -7.0370 3.6726 24 6 2.8615 -6.1899 2.7142 25 6 2.0760 -0.7911 1.2074 26 1 2.9868 -0.3206 1.5777 27 6 1.0250 -0.8359 2.3184 28 8 1.5774 -1.4746 3.4711 29 1 -0.3633 0.4629 0.9175 30 1 -0.3633 0.5632 -0.8595 31 1 -0.3633 -1.0260 -0.0579 32 1 3.1096 -0.5146 -1.4368 33 1 1.4442 -0.6736 -2.0884 34 1 2.7303 -2.8851 -1.2109 35 1 1.0053 -2.6543 -0.7952 36 1 2.1984 -4.9129 0.5126 37 1 3.8438 -4.4041 0.0633 38 1 5.7358 -4.9134 1.4890 39 1 6.6733 -6.4108 3.2023 40 1 4.3171 -10.5278 8.1657 41 1 2.7207 -7.6344 4.2827 42 1 1.7925 -6.1252 2.5748 43 1 0.7241 0.1798 2.5750 44 1 0.1559 -1.3962 1.9740 45 1 0.9652 -1.5380 4.2170 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000189502297.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:28 Heat of formation + Delta-G solvation = -78.953519 kcal Electronic energy + Delta-G solvation = -26832.416174 eV Core-core repulsion = 23008.928199 eV Total energy + Delta-G solvation = -3823.487975 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.47853 -39.12548 -37.89095 -36.40494 -36.22139 -33.09650 -32.39776 -31.32296 -30.56542 -30.13434 -27.82310 -26.38819 -25.16444 -24.79382 -22.74759 -21.99246 -20.86809 -19.84585 -18.77435 -17.80016 -17.48651 -17.16522 -16.99852 -16.40460 -15.29615 -14.95313 -14.70799 -14.54516 -14.43303 -14.10072 -13.85093 -13.70718 -13.66710 -13.39793 -13.01706 -12.96580 -12.59095 -12.47817 -12.38502 -12.22915 -12.13064 -11.81740 -11.48602 -11.29873 -11.20332 -11.17735 -10.85662 -10.79039 -10.66766 -10.58550 -10.08452 -9.90490 -9.35674 -9.29801 -8.78250 -8.55536 -8.12959 -7.20193 -6.34346 -4.00396 2.25773 2.26330 3.00445 3.06684 3.27421 3.31752 3.46176 3.93791 4.06902 4.30499 4.34925 4.52899 4.63268 4.80939 4.90879 4.94850 4.97172 5.10704 5.14514 5.16060 5.19684 5.21975 5.23155 5.30754 5.37894 5.43102 5.54386 5.61002 5.63231 5.71048 5.75184 5.77426 5.86176 5.93475 6.22749 6.36666 6.43490 6.66919 6.89917 7.12947 7.33023 7.41023 7.63689 7.72598 7.76227 7.89140 8.12405 8.57782 9.01452 9.65098 10.73614 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.027128 B = 0.002650 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.908049 B =10563.307706 C =10976.476589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.098 4.098 3 H 0.090 0.910 4 C -0.129 4.129 5 C 0.099 3.901 6 N -0.625 5.625 7 C 0.516 3.484 8 O -0.476 6.476 9 C -0.076 4.076 10 C -0.157 4.157 11 C -0.062 4.062 12 C -0.191 4.191 13 C 0.162 3.838 14 O -0.220 6.220 15 C -0.387 4.387 16 H 0.106 0.894 17 C 0.062 3.938 18 N -0.882 5.882 19 Si 0.905 3.095 20 H -0.274 1.274 21 H -0.283 1.283 22 H -0.260 1.260 23 C -0.219 4.219 24 C -0.057 4.057 25 C 0.143 3.857 26 H 0.077 0.923 27 C 0.065 3.935 28 O -0.535 6.535 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.077 0.923 35 H 0.065 0.935 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.109 0.891 39 H 0.116 0.884 40 H 0.278 0.722 41 H 0.132 0.868 42 H 0.105 0.895 43 H 0.045 0.955 44 H 0.044 0.956 45 H 0.366 0.634 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.573 20.026 -19.271 28.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.117 4.117 3 H 0.108 0.892 4 C -0.167 4.167 5 C -0.024 4.024 6 N -0.364 5.364 7 C 0.303 3.697 8 O -0.346 6.346 9 C -0.116 4.116 10 C -0.158 4.158 11 C -0.081 4.081 12 C -0.210 4.210 13 C 0.110 3.890 14 O -0.125 6.125 15 C -0.463 4.463 16 H 0.123 0.877 17 C -0.140 4.140 18 N -0.521 5.521 19 Si 0.731 3.269 20 H -0.199 1.199 21 H -0.209 1.209 22 H -0.184 1.184 23 C -0.238 4.238 24 C -0.075 4.075 25 C 0.039 3.961 26 H 0.095 0.905 27 C -0.015 4.015 28 O -0.338 6.338 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.096 0.904 33 H 0.103 0.897 34 H 0.095 0.905 35 H 0.083 0.917 36 H 0.106 0.894 37 H 0.106 0.894 38 H 0.127 0.873 39 H 0.134 0.866 40 H 0.089 0.911 41 H 0.150 0.850 42 H 0.123 0.877 43 H 0.063 0.937 44 H 0.062 0.938 45 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -6.642 19.772 -18.669 27.993 hybrid contribution -0.085 -0.031 0.561 0.568 sum -6.727 19.741 -18.108 27.620 Atomic orbital electron populations 1.21901 0.94142 1.02374 1.02199 1.22246 0.96426 0.99247 0.93768 0.89176 1.22913 1.02073 0.94277 0.97392 1.22273 1.00573 0.97476 0.82104 1.48666 1.65893 1.11164 1.10652 1.20634 0.77416 0.85046 0.86568 1.90834 1.47276 1.81329 1.15118 1.20410 1.02011 0.91327 0.97867 1.18726 0.93431 1.02011 1.01665 1.20391 0.93949 0.96896 0.96819 1.20137 0.98856 1.01621 1.00368 1.19104 0.91760 0.89015 0.89144 1.83568 1.36591 1.51432 1.40889 1.20772 0.90293 1.26757 1.08453 0.87673 1.24453 0.99933 0.95331 0.94323 1.69644 1.34643 1.30544 1.17246 0.86185 0.83862 0.77423 0.79446 1.19909 1.20861 1.18372 1.21210 0.95225 1.04605 1.02734 1.20537 0.97964 0.94752 0.94264 1.21485 0.97879 0.83740 0.92960 0.90516 1.22619 0.95498 0.95762 0.87590 1.86997 1.41823 1.81308 1.23674 0.92016 0.92139 0.92143 0.90391 0.89727 0.90507 0.91691 0.89441 0.89407 0.87306 0.86615 0.91150 0.85042 0.87690 0.93700 0.93804 0.78820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 7.98 37.16 0.30 -0.48 16 2 C -0.10 -0.61 3.57 -88.57 -0.32 -0.92 16 3 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 4 C -0.13 -0.69 6.59 -24.37 -0.16 -0.85 16 5 C 0.10 0.72 6.37 -2.52 -0.02 0.71 16 6 N -0.62 -7.10 3.07 -163.01 -0.50 -7.60 16 7 C 0.52 7.85 7.59 -10.99 -0.08 7.76 16 8 O -0.48 -9.53 13.31 -18.56 -0.25 -9.78 16 9 C -0.08 -1.03 4.83 -29.04 -0.14 -1.17 16 10 C -0.16 -2.82 4.38 -104.57 -0.46 -3.28 16 11 C -0.06 -1.16 9.69 -39.61 -0.38 -1.54 16 12 C -0.19 -4.08 9.99 -39.40 -0.39 -4.47 16 13 C 0.16 3.98 6.65 -39.11 -0.26 3.72 16 14 O -0.22 -6.08 8.59 0.04 0.00 -6.08 16 15 C -0.39 -11.35 9.95 30.88 0.31 -11.04 16 16 H 0.11 3.15 5.44 -52.49 -0.29 2.86 16 17 C 0.06 1.81 5.49 -17.52 -0.10 1.71 16 18 N -0.88 -26.24 13.96 55.48 0.77 -25.46 16 19 Si 0.91 22.44 28.62 -169.99 -4.86 17.58 16 20 H -0.27 -6.70 7.11 56.52 0.40 -6.29 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.26 -6.44 7.11 56.52 0.40 -6.04 16 23 C -0.22 -5.05 9.17 -39.39 -0.36 -5.41 16 24 C -0.06 -1.12 9.69 -39.61 -0.38 -1.50 16 25 C 0.14 1.47 3.21 -66.95 -0.22 1.25 16 26 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 27 C 0.06 0.67 5.30 37.16 0.20 0.87 16 28 O -0.53 -7.71 10.34 -59.34 -0.61 -8.32 16 29 H 0.06 0.32 6.56 -51.93 -0.34 -0.02 16 30 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.06 0.35 7.01 -51.93 -0.36 -0.01 16 32 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.08 0.31 8.05 -51.93 -0.42 -0.11 16 34 H 0.08 0.49 7.47 -51.93 -0.39 0.10 16 35 H 0.06 0.42 7.70 -51.93 -0.40 0.02 16 36 H 0.09 1.01 8.08 -51.93 -0.42 0.59 16 37 H 0.09 0.97 7.79 -51.93 -0.40 0.57 16 38 H 0.11 1.70 8.06 -52.48 -0.42 1.28 16 39 H 0.12 2.30 8.06 -52.48 -0.42 1.88 16 40 H 0.28 7.64 8.31 -40.82 -0.34 7.30 16 41 H 0.13 3.16 5.64 -52.48 -0.30 2.86 16 42 H 0.11 1.82 8.06 -52.49 -0.42 1.39 16 43 H 0.04 0.37 7.42 -51.93 -0.39 -0.01 16 44 H 0.04 0.43 6.97 -51.93 -0.36 0.07 16 45 H 0.37 3.91 9.12 45.56 0.42 4.33 16 LS Contribution 361.95 15.07 5.45 5.45 Total: -1.00 -35.83 361.95 -8.20 -44.04 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: -5.74 Total: 4.83 kcal Atomic # 6 Polarization: -12.19 SS G_CDS: -2.47 Total: -14.66 kcal Atomic # 7 Polarization: -33.34 SS G_CDS: 0.27 Total: -33.06 kcal Atomic # 8 Polarization: -23.32 SS G_CDS: -0.86 Total: -24.18 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -4.86 Total: 17.58 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -35.83 -8.20 -44.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189502297.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.917 kcal (2) G-P(sol) polarization free energy of solvation -35.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds