Wall clock time and date at job start Tue Mar 31 2020 13:31:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 110.78016 * 2 1 4 4 C 1.55548 * 110.78271 * 236.56817 * 2 1 3 5 5 C 1.54913 * 101.59986 * 277.24657 * 4 2 1 6 6 N 1.47430 * 104.82652 * 322.95335 * 5 4 2 7 7 C 1.34778 * 125.64225 * 204.16056 * 6 5 4 8 8 O 1.21286 * 119.99800 * 179.97438 * 7 6 5 9 9 C 1.50696 * 120.00164 * 359.96682 * 7 6 5 10 10 C 1.50702 * 109.47199 * 179.97438 * 9 7 6 11 11 C 1.38302 * 119.93066 * 269.72729 * 10 9 7 12 12 C 1.38095 * 120.06981 * 179.72788 * 11 10 9 13 13 C 1.38878 * 119.93164 * 0.56174 * 12 11 10 14 14 O 1.35746 * 120.07242 * 179.68921 * 13 12 11 15 15 C 1.34837 * 117.00514 * 174.48831 * 14 13 12 16 16 H 1.08001 * 119.99240 * 5.05333 * 15 14 13 17 17 C 1.38650 * 120.00477 * 185.05651 * 15 14 13 18 18 N 1.31548 * 120.00318 * 180.02562 * 17 15 14 19 19 Si 1.86803 * 119.99737 * 359.97438 * 17 15 14 20 20 H 1.48500 * 109.47047 * 89.99887 * 19 17 15 21 21 H 1.48504 * 109.47128 * 209.99977 * 19 17 15 22 22 H 1.48503 * 109.47283 * 329.99887 * 19 17 15 23 23 C 1.38881 * 119.86179 * 359.70864 * 13 12 11 24 24 C 1.38098 * 119.92856 * 359.97438 * 23 13 12 25 25 C 1.47022 * 108.70864 * 24.13000 * 6 5 4 26 26 H 1.08998 * 109.88074 * 239.52506 * 25 6 5 27 27 C 1.52999 * 109.88111 * 118.51033 * 25 6 5 28 28 O 1.42892 * 109.47142 * 66.72052 * 27 25 6 29 29 H 1.08998 * 109.46909 * 296.76940 * 1 2 3 30 30 H 1.08995 * 109.46927 * 56.76325 * 1 2 3 31 31 H 1.09000 * 109.47024 * 176.76852 * 1 2 3 32 32 H 1.08997 * 111.02916 * 159.15026 * 4 2 1 33 33 H 1.09002 * 110.99448 * 35.32580 * 4 2 1 34 34 H 1.08991 * 110.36383 * 204.11900 * 5 4 2 35 35 H 1.08993 * 110.45744 * 81.83604 * 5 4 2 36 36 H 1.09001 * 109.46805 * 299.99037 * 9 7 6 37 37 H 1.08997 * 109.47753 * 59.99362 * 9 7 6 38 38 H 1.08003 * 119.96471 * 359.96786 * 11 10 9 39 39 H 1.08004 * 120.03716 * 180.27422 * 12 11 10 40 40 H 0.96998 * 120.00501 * 180.02562 * 18 17 15 41 41 H 1.08004 * 120.03934 * 180.02562 * 23 13 12 42 42 H 1.08000 * 119.96691 * 180.02562 * 24 23 13 43 43 H 1.09001 * 109.46774 * 186.72041 * 27 25 6 44 44 H 1.08995 * 109.47499 * 306.71326 * 27 25 6 45 45 H 0.96701 * 114.00128 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9167 1.0191 0.0000 4 6 2.0819 -0.8012 -1.2136 5 6 2.0135 -2.2554 -0.6840 6 7 2.3708 -2.1544 0.7428 7 6 2.8835 -3.1474 1.4962 8 8 3.1414 -2.9506 2.6649 9 6 3.1362 -4.5022 0.8866 10 6 3.7076 -5.4249 1.9322 11 6 5.0773 -5.5087 2.1043 12 6 5.6038 -6.3491 3.0654 13 6 4.7568 -7.1192 3.8516 14 8 5.2715 -7.9510 4.7929 15 6 4.3934 -8.5831 5.5974 16 1 3.3322 -8.4808 5.4244 17 6 4.8526 -9.3644 6.6468 18 7 3.9959 -9.9816 7.4314 19 14 6.6880 -9.5418 6.9455 20 1 7.1449 -8.4722 7.8688 21 1 6.9651 -10.8695 7.5502 22 1 7.4133 -9.4246 5.6549 23 6 3.3820 -7.0370 3.6726 24 6 2.8615 -6.1899 2.7142 25 6 2.0760 -0.7911 1.2074 26 1 2.9868 -0.3206 1.5777 27 6 1.0250 -0.8359 2.3184 28 8 1.5774 -1.4746 3.4711 29 1 -0.3633 0.4629 0.9175 30 1 -0.3633 0.5632 -0.8595 31 1 -0.3633 -1.0260 -0.0579 32 1 3.1096 -0.5146 -1.4368 33 1 1.4442 -0.6736 -2.0884 34 1 2.7303 -2.8851 -1.2109 35 1 1.0053 -2.6543 -0.7952 36 1 2.1984 -4.9129 0.5126 37 1 3.8438 -4.4041 0.0633 38 1 5.7358 -4.9134 1.4890 39 1 6.6733 -6.4108 3.2023 40 1 4.3171 -10.5278 8.1657 41 1 2.7207 -7.6344 4.2827 42 1 1.7925 -6.1252 2.5748 43 1 0.7241 0.1798 2.5750 44 1 0.1559 -1.3962 1.9740 45 1 0.9652 -1.5380 4.2170 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000189502297.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:28 Heat of formation + Delta-G solvation = -103.277391 kcal Electronic energy + Delta-G solvation = -26833.470936 eV Core-core repulsion = 23008.928199 eV Total energy + Delta-G solvation = -3824.542737 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.40121 -40.79557 -39.13742 -38.00738 -37.15197 -34.52614 -33.93462 -32.72034 -31.81328 -31.25360 -28.89549 -27.70832 -26.57907 -25.80391 -23.74258 -23.58388 -22.23971 -20.70933 -19.84556 -19.64309 -19.08048 -18.42177 -17.88075 -17.28034 -16.69483 -16.55679 -15.88903 -15.84200 -15.64603 -15.35931 -15.29506 -15.10337 -14.83327 -14.55335 -14.31661 -14.17289 -14.06553 -13.68963 -13.51846 -13.10649 -12.99624 -12.93037 -12.77035 -12.59907 -12.46636 -12.39647 -12.32273 -11.93806 -11.78330 -11.60946 -11.39667 -11.28739 -10.92332 -10.81510 -10.53902 -9.79387 -9.46520 -8.97738 -8.50972 -6.23449 0.58021 0.61817 1.29282 1.34471 1.50803 1.91230 2.13859 2.27549 2.77411 3.03881 3.17601 3.27612 3.54435 3.76359 3.87570 4.00307 4.05123 4.14988 4.21585 4.23936 4.33881 4.41848 4.43870 4.44965 4.56290 4.57120 4.63954 4.71553 4.79449 4.80454 4.93616 4.98415 5.00844 5.17033 5.21586 5.23685 5.24705 5.36542 5.47140 5.54251 5.59717 5.73826 5.79348 5.90481 6.24171 6.72039 6.83290 6.93266 7.50441 7.58023 8.61033 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.027128 B = 0.002650 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.908049 B =10563.307706 C =10976.476589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.089 4.089 3 H 0.102 0.898 4 C -0.120 4.120 5 C 0.089 3.911 6 N -0.621 5.621 7 C 0.511 3.489 8 O -0.538 6.538 9 C -0.073 4.073 10 C -0.134 4.134 11 C -0.060 4.060 12 C -0.192 4.192 13 C 0.119 3.881 14 O -0.246 6.246 15 C -0.400 4.400 16 H 0.078 0.922 17 C 0.009 3.991 18 N -0.924 5.924 19 Si 0.972 3.028 20 H -0.268 1.268 21 H -0.263 1.263 22 H -0.262 1.262 23 C -0.236 4.236 24 C -0.063 4.063 25 C 0.134 3.866 26 H 0.049 0.951 27 C 0.061 3.939 28 O -0.571 6.571 29 H 0.058 0.942 30 H 0.079 0.921 31 H 0.054 0.946 32 H 0.079 0.921 33 H 0.111 0.889 34 H 0.093 0.907 35 H 0.079 0.921 36 H 0.116 0.884 37 H 0.126 0.874 38 H 0.150 0.850 39 H 0.128 0.872 40 H 0.285 0.715 41 H 0.106 0.894 42 H 0.129 0.871 43 H 0.065 0.935 44 H 0.050 0.950 45 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.419 22.431 -23.199 33.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.108 4.108 3 H 0.121 0.879 4 C -0.158 4.158 5 C -0.033 4.033 6 N -0.357 5.357 7 C 0.300 3.700 8 O -0.413 6.413 9 C -0.112 4.112 10 C -0.135 4.135 11 C -0.078 4.078 12 C -0.211 4.211 13 C 0.070 3.930 14 O -0.154 6.154 15 C -0.477 4.477 16 H 0.096 0.904 17 C -0.189 4.189 18 N -0.565 5.565 19 Si 0.794 3.206 20 H -0.193 1.193 21 H -0.188 1.188 22 H -0.186 1.186 23 C -0.256 4.256 24 C -0.081 4.081 25 C 0.030 3.970 26 H 0.068 0.932 27 C -0.017 4.017 28 O -0.376 6.376 29 H 0.077 0.923 30 H 0.098 0.902 31 H 0.073 0.927 32 H 0.098 0.902 33 H 0.129 0.871 34 H 0.111 0.889 35 H 0.097 0.903 36 H 0.134 0.866 37 H 0.144 0.856 38 H 0.168 0.832 39 H 0.146 0.854 40 H 0.095 0.905 41 H 0.124 0.876 42 H 0.146 0.854 43 H 0.083 0.917 44 H 0.068 0.932 45 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -6.530 22.223 -22.683 32.420 hybrid contribution -0.301 -0.494 1.500 1.608 sum -6.831 21.729 -21.183 31.105 Atomic orbital electron populations 1.21890 0.93135 1.02351 1.02998 1.22260 0.97100 0.99305 0.92107 0.87941 1.22937 1.02799 0.92466 0.97612 1.22639 1.01773 0.99349 0.79544 1.48663 1.64042 1.10747 1.12260 1.20804 0.77094 0.86078 0.86037 1.90831 1.50348 1.82504 1.17666 1.20499 1.04204 0.89510 0.97032 1.19288 0.93208 1.00276 1.00710 1.20904 0.95003 0.95880 0.96032 1.20485 0.99362 1.01125 1.00170 1.19639 0.93034 0.90432 0.89914 1.83507 1.36180 1.53385 1.42284 1.20715 0.89720 1.27674 1.09543 0.90401 1.25295 1.04698 0.94974 0.93936 1.69726 1.36655 1.31902 1.18259 0.85204 0.77975 0.78285 0.79135 1.19309 1.18789 1.18638 1.21227 0.94750 1.05672 1.03908 1.20842 0.99649 0.94108 0.93508 1.21707 0.96951 0.83628 0.94696 0.93244 1.22817 0.95651 0.96642 0.86640 1.86976 1.43400 1.82047 1.25158 0.92273 0.90234 0.92676 0.90216 0.87072 0.88859 0.90302 0.86594 0.85622 0.83228 0.85358 0.90535 0.87562 0.85356 0.91708 0.93194 0.77817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 7.98 71.98 0.57 -0.42 16 2 C -0.09 -0.80 3.57 -9.46 -0.03 -0.83 16 3 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 4 C -0.12 -0.74 6.59 32.13 0.21 -0.53 16 5 C 0.09 0.89 6.37 86.86 0.55 1.44 16 6 N -0.62 -12.33 3.07 -788.04 -2.42 -14.75 16 7 C 0.51 14.33 7.59 87.66 0.66 15.00 16 8 O -0.54 -21.32 13.31 20.00 0.27 -21.05 16 9 C -0.07 -1.67 4.83 29.10 0.14 -1.53 16 10 C -0.13 -4.49 4.38 -19.83 -0.09 -4.57 16 11 C -0.06 -2.10 9.69 22.25 0.22 -1.88 16 12 C -0.19 -8.16 9.99 22.39 0.22 -7.94 16 13 C 0.12 6.07 6.65 22.58 0.15 6.22 16 14 O -0.25 -14.29 8.59 -22.77 -0.20 -14.49 16 15 C -0.40 -24.99 9.95 67.92 0.68 -24.31 16 16 H 0.08 5.11 5.44 -2.91 -0.02 5.09 16 17 C 0.01 0.55 5.49 84.83 0.47 1.01 16 18 N -0.92 -57.41 13.96 21.61 0.30 -57.11 16 19 Si 0.97 47.61 28.62 68.60 1.96 49.57 16 20 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 21 H -0.26 -11.89 7.11 99.48 0.71 -11.19 16 22 H -0.26 -12.79 7.11 99.48 0.71 -12.08 16 23 C -0.24 -11.46 9.17 22.39 0.21 -11.26 16 24 C -0.06 -2.46 9.69 22.25 0.22 -2.24 16 25 C 0.13 2.51 3.21 45.34 0.15 2.65 16 26 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 27 C 0.06 1.21 5.30 71.98 0.38 1.59 16 28 O -0.57 -16.72 10.34 -125.93 -1.30 -18.02 16 29 H 0.06 0.44 6.56 -2.39 -0.02 0.42 16 30 H 0.08 0.28 8.14 -2.39 -0.02 0.26 16 31 H 0.05 0.45 7.01 -2.39 -0.02 0.43 16 32 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.11 0.18 8.05 -2.39 -0.02 0.16 16 34 H 0.09 0.67 7.47 -2.39 -0.02 0.65 16 35 H 0.08 0.64 7.70 -2.39 -0.02 0.62 16 36 H 0.12 2.08 8.08 -2.39 -0.02 2.06 16 37 H 0.13 2.01 7.79 -2.39 -0.02 1.99 16 38 H 0.15 4.00 8.06 -2.91 -0.02 3.98 16 39 H 0.13 5.01 8.06 -2.91 -0.02 4.99 16 40 H 0.29 16.16 8.31 -92.71 -0.77 15.39 16 41 H 0.11 5.60 5.64 -2.91 -0.02 5.59 16 42 H 0.13 4.32 8.06 -2.91 -0.02 4.29 16 43 H 0.06 0.99 7.42 -2.39 -0.02 0.97 16 44 H 0.05 0.91 6.97 -2.39 -0.02 0.89 16 45 H 0.38 8.40 9.12 -74.06 -0.68 7.73 16 Total: -1.00 -84.55 361.95 3.66 -80.89 By element: Atomic # 1 Polarization: 22.23 SS G_CDS: 0.33 Total: 22.56 kcal Atomic # 6 Polarization: -32.31 SS G_CDS: 4.70 Total: -27.61 kcal Atomic # 7 Polarization: -69.74 SS G_CDS: -2.11 Total: -71.86 kcal Atomic # 8 Polarization: -52.33 SS G_CDS: -1.23 Total: -53.56 kcal Atomic # 14 Polarization: 47.61 SS G_CDS: 1.96 Total: 49.57 kcal Total: -84.55 3.66 -80.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189502297.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.385 kcal (2) G-P(sol) polarization free energy of solvation -84.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds