Wall clock time and date at job start Tue Mar 31 2020 13:31:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 110.63847 * 2 1 4 4 C 1.55159 * 110.71745 * 123.13817 * 2 1 3 5 5 C 1.54917 * 101.57845 * 153.86621 * 4 2 1 6 6 N 1.47421 * 104.83412 * 322.99498 * 5 4 2 7 7 C 1.34774 * 125.64809 * 204.09223 * 6 5 4 8 8 O 1.21282 * 120.00240 * 180.02562 * 7 6 5 9 9 C 1.50701 * 119.99998 * 0.02562 * 7 6 5 10 10 C 1.50697 * 109.47284 * 180.02562 * 9 7 6 11 11 C 1.38294 * 119.93482 * 89.99698 * 10 9 7 12 12 C 1.38105 * 120.07468 * 180.02562 * 11 10 9 13 13 C 1.38879 * 119.92293 * 359.97438 * 12 11 10 14 14 O 1.35757 * 120.06460 * 179.97438 * 13 12 11 15 15 C 1.34828 * 117.00021 * 5.53392 * 14 13 12 16 16 H 1.07998 * 120.00041 * 354.94351 * 15 14 13 17 17 C 1.38659 * 119.99812 * 174.94135 * 15 14 13 18 18 N 1.31553 * 119.99890 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 119.99845 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.46927 * 270.00173 * 19 17 15 21 21 H 1.48500 * 109.47341 * 29.99994 * 19 17 15 22 22 H 1.48496 * 109.47203 * 150.00145 * 19 17 15 23 23 C 1.38882 * 119.86740 * 0.25219 * 13 12 11 24 24 C 1.38098 * 119.92700 * 359.49807 * 23 13 12 25 25 C 1.47017 * 108.70499 * 24.35168 * 6 5 4 26 26 H 1.09004 * 109.88236 * 118.13103 * 25 6 5 27 27 C 1.53003 * 109.88801 * 239.30104 * 25 6 5 28 28 O 1.42904 * 109.46478 * 293.54852 * 27 25 6 29 29 H 1.08999 * 109.47600 * 298.31314 * 1 2 3 30 30 H 1.09001 * 109.47069 * 58.32012 * 1 2 3 31 31 H 1.09005 * 109.46993 * 178.31105 * 1 2 3 32 32 H 1.08998 * 111.00709 * 35.79826 * 4 2 1 33 33 H 1.08999 * 111.03872 * 271.95174 * 4 2 1 34 34 H 1.08995 * 110.36526 * 204.14853 * 5 4 2 35 35 H 1.09004 * 110.45472 * 81.88026 * 5 4 2 36 36 H 1.09001 * 109.47582 * 59.99589 * 9 7 6 37 37 H 1.09008 * 109.46830 * 299.99759 * 9 7 6 38 38 H 1.08001 * 119.96800 * 359.97438 * 11 10 9 39 39 H 1.07992 * 120.03825 * 179.97438 * 12 11 10 40 40 H 0.97001 * 120.00212 * 0.02562 * 18 17 15 41 41 H 1.08001 * 120.03651 * 179.72343 * 23 13 12 42 42 H 1.07999 * 119.96336 * 180.27765 * 24 23 13 43 43 H 1.09000 * 109.47209 * 53.54116 * 27 25 6 44 44 H 1.08990 * 109.47509 * 173.54778 * 27 25 6 45 45 H 0.96703 * 113.99314 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0789 -0.7933 1.2152 5 6 3.4633 -1.2486 0.6897 6 7 3.2446 -1.5519 -0.7363 7 6 3.9924 -2.3860 -1.4856 8 8 3.7195 -2.5607 -2.6543 9 6 5.1678 -3.1016 -0.8712 10 6 5.8305 -3.9655 -1.9131 11 6 6.8483 -3.4478 -2.6931 12 6 7.4573 -4.2367 -3.6491 13 6 7.0468 -5.5516 -3.8263 14 8 7.6431 -6.3295 -4.7656 15 6 8.7023 -5.8037 -5.4133 16 1 8.9897 -4.7781 -5.2349 17 6 9.4225 -6.5799 -6.3086 18 7 9.0721 -7.8291 -6.5262 19 14 10.8904 -5.8517 -7.2055 20 1 10.4378 -5.2417 -8.4817 21 1 11.5229 -4.8106 -6.3562 22 1 11.8772 -6.9237 -7.4918 23 6 6.0212 -6.0672 -3.0446 24 6 5.4198 -5.2747 -2.0868 25 6 2.0794 -0.7890 -1.2073 26 1 2.3815 -0.1003 -1.9963 27 6 1.0073 -1.7468 -1.7310 28 8 1.4875 -2.4024 -2.9064 29 1 -0.3634 0.4874 0.9047 30 1 -0.3633 0.5397 -0.8745 31 1 -0.3633 -1.0273 -0.0303 32 1 1.4452 -1.6511 1.4404 33 1 2.1849 -0.1488 2.0878 34 1 3.7960 -2.1404 1.2207 35 1 4.1945 -0.4477 0.7994 36 1 4.8228 -3.7259 -0.0469 37 1 5.8840 -2.3697 -0.4976 38 1 7.1669 -2.4251 -2.5551 39 1 8.2518 -3.8317 -4.2582 40 1 8.3097 -8.2071 -6.0608 41 1 5.6968 -7.0880 -3.1832 42 1 4.6252 -5.6765 -1.4756 43 1 0.7802 -2.4906 -0.9672 44 1 0.1045 -1.1854 -1.9712 45 1 0.8583 -3.0264 -3.2935 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000189502352.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:36 Heat of formation + Delta-G solvation = -85.973332 kcal Electronic energy + Delta-G solvation = -26766.845799 eV Core-core repulsion = 22943.053422 eV Total energy + Delta-G solvation = -3823.792377 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.46110 -39.06968 -37.87620 -36.37704 -36.18055 -33.33373 -32.38896 -31.13758 -30.52271 -30.11708 -27.81011 -26.10370 -24.89235 -24.59947 -23.00123 -21.85655 -21.01175 -19.80910 -18.93912 -18.27790 -17.66971 -16.78581 -16.67761 -16.28979 -15.70060 -15.16406 -14.61501 -14.49993 -14.14671 -13.99594 -13.90074 -13.65065 -13.57165 -13.45145 -13.37922 -12.98686 -12.83979 -12.63081 -12.48483 -12.25056 -11.78287 -11.54678 -11.42827 -11.15802 -11.10694 -10.97317 -10.81802 -10.76199 -10.65125 -10.26673 -10.19935 -9.89871 -9.34684 -9.31619 -8.67871 -8.56604 -8.11125 -7.13700 -6.69674 -3.98011 2.28497 2.29877 3.01236 3.04668 3.28414 3.35272 3.48204 3.92632 4.13974 4.18056 4.30396 4.46105 4.60831 4.86532 4.93203 4.97593 5.05651 5.11887 5.16133 5.19381 5.22834 5.23551 5.27582 5.34175 5.37055 5.39030 5.45646 5.56058 5.67228 5.73172 5.76828 5.79051 5.88017 5.89542 6.24227 6.35828 6.45426 6.72648 6.93611 7.15234 7.32360 7.42551 7.63213 7.66373 7.75237 7.84284 8.48353 8.57745 9.00450 9.70322 10.74623 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.028421 B = 0.002505 C = 0.002474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.966519 B =11176.826217 C =11317.128825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.098 4.098 3 H 0.088 0.912 4 C -0.129 4.129 5 C 0.098 3.902 6 N -0.626 5.626 7 C 0.515 3.485 8 O -0.474 6.474 9 C -0.075 4.075 10 C -0.163 4.163 11 C -0.057 4.057 12 C -0.227 4.227 13 C 0.159 3.841 14 O -0.204 6.204 15 C -0.470 4.470 16 H 0.083 0.917 17 C 0.008 3.992 18 N -0.884 5.884 19 Si 1.099 2.901 20 H -0.281 1.281 21 H -0.283 1.283 22 H -0.276 1.276 23 C -0.194 4.194 24 C -0.058 4.058 25 C 0.143 3.857 26 H 0.076 0.924 27 C 0.064 3.936 28 O -0.533 6.533 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.076 0.924 35 H 0.067 0.933 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.104 0.896 39 H 0.127 0.873 40 H 0.282 0.718 41 H 0.114 0.886 42 H 0.107 0.893 43 H 0.040 0.960 44 H 0.050 0.950 45 H 0.364 0.636 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.096 15.926 18.006 28.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.117 4.117 3 H 0.106 0.894 4 C -0.167 4.167 5 C -0.025 4.025 6 N -0.365 5.365 7 C 0.302 3.698 8 O -0.343 6.343 9 C -0.115 4.115 10 C -0.165 4.165 11 C -0.075 4.075 12 C -0.247 4.247 13 C 0.106 3.894 14 O -0.109 6.109 15 C -0.546 4.546 16 H 0.101 0.899 17 C -0.197 4.197 18 N -0.517 5.517 19 Si 0.923 3.077 20 H -0.207 1.207 21 H -0.209 1.209 22 H -0.201 1.201 23 C -0.213 4.213 24 C -0.076 4.076 25 C 0.039 3.961 26 H 0.094 0.906 27 C -0.015 4.015 28 O -0.336 6.336 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.095 0.905 33 H 0.102 0.898 34 H 0.095 0.905 35 H 0.085 0.915 36 H 0.105 0.895 37 H 0.105 0.895 38 H 0.122 0.878 39 H 0.145 0.855 40 H 0.092 0.908 41 H 0.132 0.868 42 H 0.125 0.875 43 H 0.058 0.942 44 H 0.067 0.933 45 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -14.460 15.503 16.165 26.659 hybrid contribution -1.803 0.290 1.204 2.187 sum -16.263 15.792 17.369 28.558 Atomic orbital electron populations 1.21889 0.93907 1.02433 1.02246 1.22194 0.96404 0.99301 0.93764 0.89353 1.22881 0.96056 1.00312 0.97485 1.22282 0.97317 1.00801 0.82107 1.48682 1.30605 1.46492 1.10728 1.20670 0.83470 0.78799 0.86829 1.90834 1.67713 1.60448 1.15351 1.20392 0.94923 0.98302 0.97860 1.18673 1.01175 0.94552 1.02071 1.20516 0.94883 0.97720 0.94379 1.21109 1.05458 0.94756 1.03335 1.19226 0.91999 0.90060 0.88108 1.83662 1.42028 1.40997 1.44201 1.22232 1.07153 0.99802 1.25435 0.89913 1.26520 1.02177 0.94972 0.95984 1.70535 1.27502 1.13053 1.40586 0.83050 0.73788 0.75096 0.75717 1.20743 1.20866 1.20102 1.20119 1.00709 1.00487 0.99994 1.20363 0.97440 0.93083 0.96752 1.21457 0.86091 0.92510 0.96036 0.90583 1.22655 0.95571 0.94884 0.88422 1.87044 1.44254 1.60377 1.41895 0.92007 0.92067 0.91975 0.90519 0.89783 0.90529 0.91526 0.89522 0.89459 0.87810 0.85529 0.90815 0.86793 0.87468 0.94229 0.93250 0.79028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 7.98 37.16 0.30 -0.44 16 2 C -0.10 -0.62 3.46 -88.78 -0.31 -0.93 16 3 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 4 C -0.13 -0.71 6.54 -24.58 -0.16 -0.87 16 5 C 0.10 0.74 6.69 -2.53 -0.02 0.72 16 6 N -0.63 -7.32 3.08 -163.01 -0.50 -7.83 16 7 C 0.51 8.02 7.59 -10.99 -0.08 7.94 16 8 O -0.47 -9.63 13.12 -18.87 -0.25 -9.88 16 9 C -0.07 -1.05 4.83 -29.04 -0.14 -1.19 16 10 C -0.16 -3.05 4.38 -104.58 -0.46 -3.51 16 11 C -0.06 -1.15 9.69 -39.61 -0.38 -1.53 16 12 C -0.23 -5.40 9.17 -39.39 -0.36 -5.76 16 13 C 0.16 4.11 6.65 -39.11 -0.26 3.85 16 14 O -0.20 -6.06 9.16 0.03 0.00 -6.06 16 15 C -0.47 -13.83 9.49 30.89 0.29 -13.54 16 16 H 0.08 2.31 5.20 -52.49 -0.27 2.03 16 17 C 0.01 0.24 5.49 -17.52 -0.10 0.15 16 18 N -0.88 -27.26 13.70 55.48 0.76 -26.50 16 19 Si 1.10 24.65 29.92 -169.99 -5.09 19.57 16 20 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 21 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 22 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 23 C -0.19 -4.39 9.99 -39.39 -0.39 -4.79 16 24 C -0.06 -1.13 9.69 -39.61 -0.38 -1.52 16 25 C 0.14 1.50 3.28 -66.95 -0.22 1.28 16 26 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 27 C 0.06 0.67 5.31 37.16 0.20 0.87 16 28 O -0.53 -7.69 10.17 -59.66 -0.61 -8.30 16 29 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.06 0.30 7.80 -51.93 -0.41 -0.10 16 31 H 0.06 0.32 6.41 -51.93 -0.33 -0.01 16 32 H 0.08 0.43 8.05 -51.93 -0.42 0.01 16 33 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.08 0.51 7.48 -51.93 -0.39 0.12 16 35 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.09 1.01 7.79 -51.93 -0.40 0.60 16 37 H 0.09 1.04 8.08 -51.92 -0.42 0.62 16 38 H 0.10 1.83 8.06 -52.49 -0.42 1.41 16 39 H 0.13 3.03 5.64 -52.49 -0.30 2.73 16 40 H 0.28 8.89 7.97 -40.82 -0.33 8.57 16 41 H 0.11 2.45 8.06 -52.49 -0.42 2.03 16 42 H 0.11 1.77 8.06 -52.49 -0.42 1.35 16 43 H 0.04 0.40 7.76 -51.93 -0.40 -0.01 16 44 H 0.05 0.41 6.44 -51.93 -0.33 0.07 16 45 H 0.36 3.86 9.12 45.56 0.42 4.28 16 LS Contribution 363.33 15.07 5.48 5.48 Total: -1.00 -37.12 363.33 -8.45 -45.57 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: -5.76 Total: 7.21 kcal Atomic # 6 Polarization: -16.80 SS G_CDS: -2.48 Total: -19.27 kcal Atomic # 7 Polarization: -34.58 SS G_CDS: 0.26 Total: -34.33 kcal Atomic # 8 Polarization: -23.37 SS G_CDS: -0.85 Total: -24.23 kcal Atomic # 14 Polarization: 24.65 SS G_CDS: -5.09 Total: 19.57 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -37.12 -8.45 -45.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189502352.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.402 kcal (2) G-P(sol) polarization free energy of solvation -37.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds