Wall clock time and date at job start Tue Mar 31 2020 13:31:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 110.63847 * 2 1 4 4 C 1.55159 * 110.71745 * 123.13817 * 2 1 3 5 5 C 1.54917 * 101.57845 * 153.86621 * 4 2 1 6 6 N 1.47421 * 104.83412 * 322.99498 * 5 4 2 7 7 C 1.34774 * 125.64809 * 204.09223 * 6 5 4 8 8 O 1.21282 * 120.00240 * 180.02562 * 7 6 5 9 9 C 1.50701 * 119.99998 * 0.02562 * 7 6 5 10 10 C 1.50697 * 109.47284 * 180.02562 * 9 7 6 11 11 C 1.38294 * 119.93482 * 89.99698 * 10 9 7 12 12 C 1.38105 * 120.07468 * 180.02562 * 11 10 9 13 13 C 1.38879 * 119.92293 * 359.97438 * 12 11 10 14 14 O 1.35757 * 120.06460 * 179.97438 * 13 12 11 15 15 C 1.34828 * 117.00021 * 5.53392 * 14 13 12 16 16 H 1.07998 * 120.00041 * 354.94351 * 15 14 13 17 17 C 1.38659 * 119.99812 * 174.94135 * 15 14 13 18 18 N 1.31553 * 119.99890 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 119.99845 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.46927 * 270.00173 * 19 17 15 21 21 H 1.48500 * 109.47341 * 29.99994 * 19 17 15 22 22 H 1.48496 * 109.47203 * 150.00145 * 19 17 15 23 23 C 1.38882 * 119.86740 * 0.25219 * 13 12 11 24 24 C 1.38098 * 119.92700 * 359.49807 * 23 13 12 25 25 C 1.47017 * 108.70499 * 24.35168 * 6 5 4 26 26 H 1.09004 * 109.88236 * 118.13103 * 25 6 5 27 27 C 1.53003 * 109.88801 * 239.30104 * 25 6 5 28 28 O 1.42904 * 109.46478 * 293.54852 * 27 25 6 29 29 H 1.08999 * 109.47600 * 298.31314 * 1 2 3 30 30 H 1.09001 * 109.47069 * 58.32012 * 1 2 3 31 31 H 1.09005 * 109.46993 * 178.31105 * 1 2 3 32 32 H 1.08998 * 111.00709 * 35.79826 * 4 2 1 33 33 H 1.08999 * 111.03872 * 271.95174 * 4 2 1 34 34 H 1.08995 * 110.36526 * 204.14853 * 5 4 2 35 35 H 1.09004 * 110.45472 * 81.88026 * 5 4 2 36 36 H 1.09001 * 109.47582 * 59.99589 * 9 7 6 37 37 H 1.09008 * 109.46830 * 299.99759 * 9 7 6 38 38 H 1.08001 * 119.96800 * 359.97438 * 11 10 9 39 39 H 1.07992 * 120.03825 * 179.97438 * 12 11 10 40 40 H 0.97001 * 120.00212 * 0.02562 * 18 17 15 41 41 H 1.08001 * 120.03651 * 179.72343 * 23 13 12 42 42 H 1.07999 * 119.96336 * 180.27765 * 24 23 13 43 43 H 1.09000 * 109.47209 * 53.54116 * 27 25 6 44 44 H 1.08990 * 109.47509 * 173.54778 * 27 25 6 45 45 H 0.96703 * 113.99314 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0789 -0.7933 1.2152 5 6 3.4633 -1.2486 0.6897 6 7 3.2446 -1.5519 -0.7363 7 6 3.9924 -2.3860 -1.4856 8 8 3.7195 -2.5607 -2.6543 9 6 5.1678 -3.1016 -0.8712 10 6 5.8305 -3.9655 -1.9131 11 6 6.8483 -3.4478 -2.6931 12 6 7.4573 -4.2367 -3.6491 13 6 7.0468 -5.5516 -3.8263 14 8 7.6431 -6.3295 -4.7656 15 6 8.7023 -5.8037 -5.4133 16 1 8.9897 -4.7781 -5.2349 17 6 9.4225 -6.5799 -6.3086 18 7 9.0721 -7.8291 -6.5262 19 14 10.8904 -5.8517 -7.2055 20 1 10.4378 -5.2417 -8.4817 21 1 11.5229 -4.8106 -6.3562 22 1 11.8772 -6.9237 -7.4918 23 6 6.0212 -6.0672 -3.0446 24 6 5.4198 -5.2747 -2.0868 25 6 2.0794 -0.7890 -1.2073 26 1 2.3815 -0.1003 -1.9963 27 6 1.0073 -1.7468 -1.7310 28 8 1.4875 -2.4024 -2.9064 29 1 -0.3634 0.4874 0.9047 30 1 -0.3633 0.5397 -0.8745 31 1 -0.3633 -1.0273 -0.0303 32 1 1.4452 -1.6511 1.4404 33 1 2.1849 -0.1488 2.0878 34 1 3.7960 -2.1404 1.2207 35 1 4.1945 -0.4477 0.7994 36 1 4.8228 -3.7259 -0.0469 37 1 5.8840 -2.3697 -0.4976 38 1 7.1669 -2.4251 -2.5551 39 1 8.2518 -3.8317 -4.2582 40 1 8.3097 -8.2071 -6.0608 41 1 5.6968 -7.0880 -3.1832 42 1 4.6252 -5.6765 -1.4756 43 1 0.7802 -2.4906 -0.9672 44 1 0.1045 -1.1854 -1.9712 45 1 0.8583 -3.0264 -3.2935 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000189502352.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:35 Heat of formation + Delta-G solvation = -111.587378 kcal Electronic energy + Delta-G solvation = -26767.956507 eV Core-core repulsion = 22943.053422 eV Total energy + Delta-G solvation = -3824.903085 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.41199 -40.79967 -39.15720 -38.04762 -37.10701 -34.46958 -34.11293 -32.65727 -31.86708 -31.20195 -28.85037 -27.44677 -26.65037 -25.47073 -23.78319 -23.64991 -22.51725 -20.71238 -20.23665 -19.79982 -18.74692 -18.55527 -17.70588 -17.23342 -16.92728 -16.65622 -16.07289 -15.72947 -15.63701 -15.53947 -15.25303 -14.93841 -14.88980 -14.64655 -14.32408 -14.18277 -13.93949 -13.60473 -13.38850 -12.99835 -12.95342 -12.80363 -12.71511 -12.47582 -12.37669 -12.32048 -12.08750 -11.93071 -11.91313 -11.61882 -11.36566 -11.29256 -10.80924 -10.77466 -10.54618 -9.84802 -9.49606 -9.00839 -8.94844 -6.25605 0.52855 0.59298 1.46566 1.60311 1.76428 1.88490 2.10526 2.34564 2.82577 3.11001 3.27049 3.31996 3.59070 3.69236 3.83812 3.95569 3.97742 4.10622 4.13773 4.25848 4.33675 4.39418 4.41910 4.48924 4.51320 4.57342 4.60750 4.71276 4.73729 4.79717 4.88166 4.94035 4.98807 5.11967 5.18288 5.19718 5.23084 5.28565 5.42487 5.47976 5.56309 5.68256 5.72246 6.03899 6.27917 6.69020 6.85485 6.93975 7.47817 7.61333 8.48824 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.028421 B = 0.002505 C = 0.002474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.966519 B =11176.826217 C =11317.128825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.088 4.088 3 H 0.097 0.903 4 C -0.120 4.120 5 C 0.087 3.913 6 N -0.623 5.623 7 C 0.510 3.490 8 O -0.536 6.536 9 C -0.072 4.072 10 C -0.138 4.138 11 C -0.062 4.062 12 C -0.240 4.240 13 C 0.114 3.886 14 O -0.253 6.253 15 C -0.488 4.488 16 H 0.089 0.911 17 C -0.046 4.046 18 N -0.917 5.917 19 Si 1.149 2.851 20 H -0.265 1.265 21 H -0.259 1.259 22 H -0.270 1.270 23 C -0.204 4.204 24 C -0.055 4.055 25 C 0.133 3.867 26 H 0.047 0.953 27 C 0.062 3.938 28 O -0.569 6.569 29 H 0.079 0.921 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.079 0.921 33 H 0.111 0.889 34 H 0.092 0.908 35 H 0.081 0.919 36 H 0.123 0.877 37 H 0.119 0.881 38 H 0.135 0.865 39 H 0.115 0.885 40 H 0.259 0.741 41 H 0.115 0.885 42 H 0.146 0.854 43 H 0.047 0.953 44 H 0.070 0.930 45 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.291 18.869 21.787 33.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.107 4.107 3 H 0.116 0.884 4 C -0.158 4.158 5 C -0.034 4.034 6 N -0.359 5.359 7 C 0.299 3.701 8 O -0.411 6.411 9 C -0.111 4.111 10 C -0.139 4.139 11 C -0.080 4.080 12 C -0.259 4.259 13 C 0.065 3.935 14 O -0.161 6.161 15 C -0.564 4.564 16 H 0.106 0.894 17 C -0.241 4.241 18 N -0.552 5.552 19 Si 0.964 3.036 20 H -0.191 1.191 21 H -0.183 1.183 22 H -0.194 1.194 23 C -0.223 4.223 24 C -0.073 4.073 25 C 0.029 3.971 26 H 0.065 0.935 27 C -0.017 4.017 28 O -0.374 6.374 29 H 0.098 0.902 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.097 0.903 33 H 0.130 0.870 34 H 0.111 0.889 35 H 0.099 0.901 36 H 0.141 0.859 37 H 0.137 0.863 38 H 0.153 0.847 39 H 0.133 0.867 40 H 0.068 0.932 41 H 0.133 0.867 42 H 0.164 0.836 43 H 0.065 0.935 44 H 0.088 0.912 45 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -15.714 18.503 20.050 31.485 hybrid contribution -1.720 -0.412 0.344 1.801 sum -17.434 18.092 20.394 32.360 Atomic orbital electron populations 1.21885 0.92782 1.02549 1.03101 1.22199 0.97205 0.99179 0.92147 0.88434 1.22904 0.94555 1.00669 0.97666 1.22658 0.99119 1.02165 0.79491 1.48679 1.29966 1.44886 1.12369 1.20803 0.83860 0.79146 0.86296 1.90834 1.69518 1.62860 1.17870 1.20483 0.94957 0.98760 0.96923 1.19269 0.98955 0.94578 1.01081 1.20905 0.94942 0.98748 0.93364 1.21218 1.05789 0.94496 1.04440 1.19798 0.93510 0.91139 0.89082 1.83638 1.43345 1.42562 1.46575 1.22614 1.07639 1.00296 1.25850 0.89397 1.28443 1.04648 0.94598 0.96450 1.70676 1.27803 1.14529 1.42210 0.82541 0.70462 0.75178 0.75414 1.19060 1.18326 1.19427 1.20431 1.00162 1.01267 1.00413 1.20833 0.97469 0.93271 0.95766 1.21689 0.85918 0.92274 0.97229 0.93506 1.22834 0.96332 0.95051 0.87456 1.87022 1.45802 1.61096 1.43468 0.90185 0.92314 0.92154 0.90252 0.87026 0.88920 0.90092 0.85920 0.86306 0.84715 0.86682 0.93210 0.86701 0.83645 0.93512 0.91231 0.77930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 7.98 71.98 0.57 -0.38 16 2 C -0.09 -0.81 3.46 -9.60 -0.03 -0.84 16 3 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 4 C -0.12 -0.73 6.54 31.99 0.21 -0.52 16 5 C 0.09 0.89 6.69 86.86 0.58 1.47 16 6 N -0.62 -12.62 3.08 -788.03 -2.43 -15.05 16 7 C 0.51 14.54 7.59 87.66 0.67 15.20 16 8 O -0.54 -21.40 13.12 20.32 0.27 -21.13 16 9 C -0.07 -1.69 4.83 29.10 0.14 -1.55 16 10 C -0.14 -4.77 4.38 -19.84 -0.09 -4.86 16 11 C -0.06 -2.41 9.69 22.25 0.22 -2.20 16 12 C -0.24 -11.70 9.17 22.39 0.21 -11.50 16 13 C 0.11 6.19 6.65 22.58 0.15 6.34 16 14 O -0.25 -16.08 9.16 -22.80 -0.21 -16.29 16 15 C -0.49 -30.33 9.49 67.92 0.64 -29.68 16 16 H 0.09 5.15 5.20 -2.91 -0.02 5.13 16 17 C -0.05 -2.75 5.49 84.84 0.47 -2.29 16 18 N -0.92 -59.73 13.70 21.61 0.30 -59.43 16 19 Si 1.15 50.59 29.92 68.60 2.05 52.64 16 20 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 21 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 22 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 23 C -0.20 -9.43 9.99 22.39 0.22 -9.21 16 24 C -0.06 -2.06 9.69 22.25 0.22 -1.85 16 25 C 0.13 2.52 3.28 45.35 0.15 2.67 16 26 H 0.05 1.15 8.14 -2.38 -0.02 1.13 16 27 C 0.06 1.20 5.31 71.98 0.38 1.58 16 28 O -0.57 -16.45 10.17 -125.62 -1.28 -17.73 16 29 H 0.08 0.28 8.14 -2.39 -0.02 0.26 16 30 H 0.06 0.43 7.80 -2.39 -0.02 0.41 16 31 H 0.06 0.43 6.41 -2.38 -0.02 0.42 16 32 H 0.08 0.49 8.05 -2.39 -0.02 0.47 16 33 H 0.11 0.15 8.14 -2.39 -0.02 0.13 16 34 H 0.09 0.69 7.48 -2.39 -0.02 0.67 16 35 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.12 2.10 7.79 -2.39 -0.02 2.08 16 37 H 0.12 2.15 8.08 -2.38 -0.02 2.13 16 38 H 0.14 4.40 8.06 -2.91 -0.02 4.37 16 39 H 0.12 5.74 5.64 -2.91 -0.02 5.73 16 40 H 0.26 17.64 7.97 -92.71 -0.74 16.90 16 41 H 0.11 5.15 8.06 -2.91 -0.02 5.13 16 42 H 0.15 4.29 8.06 -2.91 -0.02 4.26 16 43 H 0.05 0.83 7.76 -2.39 -0.02 0.81 16 44 H 0.07 1.04 6.44 -2.39 -0.02 1.02 16 45 H 0.37 8.12 9.12 -74.05 -0.68 7.44 16 Total: -1.00 -89.04 363.33 3.77 -85.27 By element: Atomic # 1 Polarization: 28.98 SS G_CDS: 0.36 Total: 29.34 kcal Atomic # 6 Polarization: -42.32 SS G_CDS: 4.70 Total: -37.62 kcal Atomic # 7 Polarization: -72.35 SS G_CDS: -2.13 Total: -74.48 kcal Atomic # 8 Polarization: -53.93 SS G_CDS: -1.22 Total: -55.15 kcal Atomic # 14 Polarization: 50.59 SS G_CDS: 2.05 Total: 52.64 kcal Total: -89.04 3.77 -85.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189502352.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.321 kcal (2) G-P(sol) polarization free energy of solvation -89.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds