Wall clock time and date at job start Tue Mar 31 2020 13:31:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 110.64154 * 2 1 4 4 C 1.55155 * 110.72151 * 123.14495 * 2 1 3 5 5 C 1.54905 * 101.58475 * 153.86659 * 4 2 1 6 6 N 1.47428 * 104.82770 * 322.98702 * 5 4 2 7 7 C 1.34783 * 125.64402 * 204.09272 * 6 5 4 8 8 O 1.21277 * 119.99483 * 180.02562 * 7 6 5 9 9 C 1.50695 * 120.00073 * 0.02562 * 7 6 5 10 10 C 1.50706 * 109.46830 * 179.97438 * 9 7 6 11 11 C 1.38331 * 119.95913 * 90.00552 * 10 9 7 12 12 C 1.38277 * 120.13228 * 180.02562 * 11 10 9 13 13 C 1.38123 * 120.07219 * 359.97438 * 12 11 10 14 14 C 1.38856 * 119.93247 * 0.02562 * 13 12 11 15 15 O 1.35749 * 120.07141 * 180.02562 * 14 13 12 16 16 C 1.34834 * 116.99928 * 354.46826 * 15 14 13 17 17 H 1.08000 * 119.99669 * 5.05909 * 16 15 14 18 18 C 1.38654 * 119.99744 * 185.06009 * 16 15 14 19 19 N 1.31547 * 120.00214 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99706 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47064 * 359.97438 * 20 18 16 22 22 H 1.48493 * 109.47122 * 119.99537 * 20 18 16 23 23 H 1.48504 * 109.46641 * 239.99594 * 20 18 16 24 24 C 1.38073 * 119.96755 * 269.72951 * 10 9 7 25 25 C 1.47019 * 108.70479 * 24.36059 * 6 5 4 26 26 H 1.09003 * 109.87881 * 239.29566 * 25 6 5 27 27 C 1.53000 * 109.88548 * 118.12836 * 25 6 5 28 28 O 1.42899 * 109.47001 * 66.45249 * 27 25 6 29 29 H 1.09003 * 109.46729 * 298.31003 * 1 2 3 30 30 H 1.08999 * 109.46683 * 58.31206 * 1 2 3 31 31 H 1.08998 * 109.47114 * 178.31334 * 1 2 3 32 32 H 1.09000 * 111.00510 * 35.78599 * 4 2 1 33 33 H 1.09011 * 111.00098 * 271.93725 * 4 2 1 34 34 H 1.09005 * 110.37024 * 204.15107 * 5 4 2 35 35 H 1.08995 * 110.37067 * 81.82392 * 5 4 2 36 36 H 1.08994 * 109.47522 * 299.99639 * 9 7 6 37 37 H 1.08999 * 109.47267 * 60.00406 * 9 7 6 38 38 H 1.07993 * 119.93103 * 359.97268 * 11 10 9 39 39 H 1.08001 * 119.96639 * 179.97438 * 12 11 10 40 40 H 1.07997 * 120.03615 * 180.02562 * 13 12 11 41 41 H 0.97003 * 120.00478 * 180.02562 * 19 18 16 42 42 H 1.07992 * 120.03750 * 0.02562 * 24 10 9 43 43 H 1.08997 * 109.46719 * 186.45190 * 27 25 6 44 44 H 1.08999 * 109.47130 * 306.45406 * 27 25 6 45 45 H 0.96700 * 114.00111 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0201 0.0000 4 6 2.0790 -0.7934 1.2151 5 6 3.4633 -1.2486 0.6896 6 7 3.2445 -1.5520 -0.7364 7 6 3.9923 -2.3862 -1.4858 8 8 3.7192 -2.5608 -2.6544 9 6 5.1677 -3.1017 -0.8714 10 6 5.8296 -3.9666 -1.9131 11 6 6.8476 -3.4502 -2.6944 12 6 7.4571 -4.2404 -3.6516 13 6 7.0511 -5.5485 -3.8300 14 6 6.0295 -6.0698 -3.0473 15 8 5.6286 -7.3552 -3.2199 16 6 6.1822 -8.0369 -4.2430 17 1 6.9682 -7.5854 -4.8302 18 6 5.7425 -9.3176 -4.5412 19 7 4.7855 -9.8678 -3.8256 20 14 6.5099 -10.2624 -5.9582 21 1 7.5577 -9.4280 -6.5995 22 1 7.1196 -11.5154 -5.4451 23 1 5.4621 -10.5944 -6.9568 24 6 5.4231 -5.2752 -2.0827 25 6 2.0793 -0.7890 -1.2074 26 1 1.3156 -1.4714 -1.5804 27 6 2.5034 0.1777 -2.3149 28 8 2.9154 -0.5654 -3.4638 29 1 -0.3633 0.4874 0.9048 30 1 -0.3633 0.5398 -0.8745 31 1 -0.3633 -1.0272 -0.0302 32 1 1.4452 -1.6512 1.4402 33 1 2.1851 -0.1483 2.0873 34 1 3.7961 -2.1406 1.2205 35 1 4.1932 -0.4465 0.7991 36 1 5.8839 -2.3699 -0.4979 37 1 4.8227 -3.7260 -0.0472 38 1 7.1665 -2.4276 -2.5571 39 1 8.2514 -3.8344 -4.2604 40 1 7.5278 -6.1653 -4.5775 41 1 4.4780 -10.7639 -4.0340 42 1 4.6311 -5.6790 -1.4696 43 1 1.6624 0.8188 -2.5791 44 1 3.3322 0.7921 -1.9632 45 1 3.1988 -0.0155 -4.2070 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000189504284.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:41 Heat of formation + Delta-G solvation = -84.119394 kcal Electronic energy + Delta-G solvation = -26824.248930 eV Core-core repulsion = 23000.536947 eV Total energy + Delta-G solvation = -3823.711984 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.32056 -38.95128 -37.70766 -36.25155 -36.20594 -33.16127 -32.25267 -31.74794 -30.46880 -29.12659 -28.21496 -26.59717 -25.13783 -24.06695 -22.83322 -21.54403 -21.08449 -20.38872 -18.90486 -17.49533 -17.21577 -16.85582 -16.70090 -16.59166 -15.23068 -14.96438 -14.73410 -14.48740 -14.29938 -14.26691 -13.89106 -13.68740 -13.49773 -13.34199 -13.12796 -12.92926 -12.43240 -12.29728 -12.26257 -12.07467 -11.79130 -11.67921 -11.39064 -11.26103 -11.18370 -11.10199 -10.98388 -10.73892 -10.64304 -10.49475 -10.34848 -9.92632 -9.34023 -9.21766 -8.74321 -8.50510 -7.93322 -7.09523 -6.34574 -3.93250 2.21587 2.51524 3.05542 3.10139 3.19100 3.20970 3.25901 3.94748 4.05192 4.15630 4.41362 4.60027 4.70604 4.91280 5.00466 5.02884 5.09777 5.11107 5.16434 5.20213 5.24825 5.28201 5.33286 5.35367 5.46557 5.58646 5.61561 5.65162 5.75197 5.77197 5.81038 5.87600 6.02773 6.05239 6.29161 6.41035 6.46282 6.78593 7.04128 7.18602 7.40028 7.48681 7.55348 7.68712 7.76265 7.95573 8.10998 8.61712 9.11484 9.83590 10.84070 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.020026 B = 0.002776 C = 0.002707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.814702 B =10085.436632 C =10340.079021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.098 4.098 3 H 0.084 0.916 4 C -0.129 4.129 5 C 0.098 3.902 6 N -0.626 5.626 7 C 0.520 3.480 8 O -0.474 6.474 9 C -0.088 4.088 10 C -0.030 4.030 11 C -0.194 4.194 12 C -0.075 4.075 13 C -0.232 4.232 14 C 0.155 3.845 15 O -0.181 6.181 16 C -0.389 4.389 17 H 0.091 0.909 18 C 0.037 3.963 19 N -0.865 5.865 20 Si 0.940 3.060 21 H -0.267 1.267 22 H -0.277 1.277 23 H -0.277 1.277 24 C -0.174 4.174 25 C 0.143 3.857 26 H 0.080 0.920 27 C 0.066 3.934 28 O -0.532 6.532 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.065 0.935 36 H 0.092 0.908 37 H 0.094 0.906 38 H 0.101 0.899 39 H 0.106 0.894 40 H 0.126 0.874 41 H 0.268 0.732 42 H 0.113 0.887 43 H 0.045 0.955 44 H 0.039 0.961 45 H 0.365 0.635 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.440 22.471 10.311 25.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.117 4.117 3 H 0.103 0.897 4 C -0.167 4.167 5 C -0.025 4.025 6 N -0.364 5.364 7 C 0.308 3.692 8 O -0.344 6.344 9 C -0.128 4.128 10 C -0.031 4.031 11 C -0.213 4.213 12 C -0.093 4.093 13 C -0.251 4.251 14 C 0.102 3.898 15 O -0.085 6.085 16 C -0.465 4.465 17 H 0.109 0.891 18 C -0.166 4.166 19 N -0.501 5.501 20 Si 0.765 3.235 21 H -0.191 1.191 22 H -0.202 1.202 23 H -0.202 1.202 24 C -0.193 4.193 25 C 0.039 3.961 26 H 0.098 0.902 27 C -0.013 4.013 28 O -0.335 6.335 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.098 0.902 33 H 0.102 0.898 34 H 0.097 0.903 35 H 0.083 0.917 36 H 0.110 0.890 37 H 0.112 0.888 38 H 0.119 0.881 39 H 0.124 0.876 40 H 0.143 0.857 41 H 0.078 0.922 42 H 0.131 0.869 43 H 0.063 0.937 44 H 0.058 0.942 45 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -4.962 21.399 10.089 24.173 hybrid contribution 0.542 0.174 -1.023 1.171 sum -4.420 21.574 9.066 23.815 Atomic orbital electron populations 1.21776 0.93560 1.02591 1.02111 1.22175 0.96501 0.99244 0.93757 0.89725 1.22875 0.96044 1.00432 0.97321 1.22290 0.97331 1.00814 0.82102 1.48622 1.31038 1.46060 1.10719 1.20380 0.83458 0.78833 0.86546 1.90841 1.68573 1.59818 1.15142 1.20570 0.95430 0.98555 0.98256 1.18680 0.95589 0.92639 0.96159 1.20319 1.01157 0.98929 1.00903 1.20660 0.98326 0.93603 0.96752 1.21160 1.02161 0.96776 1.05009 1.19262 0.91955 0.85537 0.93015 1.83976 1.59842 1.17719 1.47003 1.21360 1.19140 0.97410 1.08599 0.89119 1.25265 0.96391 0.96264 0.98684 1.70050 1.26399 1.15277 1.38373 0.85661 0.78746 0.79307 0.79781 1.19147 1.20235 1.20214 1.19934 1.03525 0.93305 1.02554 1.21572 0.88799 0.92888 0.92852 0.90204 1.22514 0.97554 0.93447 0.87820 1.87032 1.87469 1.34935 1.24064 0.91938 0.92291 0.92051 0.90220 0.89792 0.90334 0.91688 0.88967 0.88775 0.88105 0.87583 0.85680 0.92228 0.86942 0.93683 0.94239 0.78974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.87 9.15 37.16 0.34 -0.53 16 2 C -0.10 -0.69 3.07 -88.78 -0.27 -0.96 16 3 H 0.08 0.50 7.85 -51.93 -0.41 0.09 16 4 C -0.13 -0.82 6.54 -24.59 -0.16 -0.98 16 5 C 0.10 0.80 6.69 -2.53 -0.02 0.78 16 6 N -0.63 -7.80 3.06 -163.01 -0.50 -8.30 16 7 C 0.52 8.59 7.58 -10.98 -0.08 8.51 16 8 O -0.47 -10.11 13.33 -18.53 -0.25 -10.36 16 9 C -0.09 -1.32 4.84 -29.03 -0.14 -1.46 16 10 C -0.03 -0.59 4.37 -104.65 -0.46 -1.05 16 11 C -0.19 -3.73 9.70 -39.53 -0.38 -4.11 16 12 C -0.08 -1.52 10.04 -39.61 -0.40 -1.92 16 13 C -0.23 -5.47 9.17 -39.40 -0.36 -5.83 16 14 C 0.16 4.06 6.65 -39.11 -0.26 3.80 16 15 O -0.18 -5.49 9.76 0.04 0.00 -5.48 16 16 C -0.39 -11.42 9.49 30.89 0.29 -11.13 16 17 H 0.09 2.48 5.20 -52.49 -0.27 2.21 16 18 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 19 N -0.87 -26.39 13.67 55.48 0.76 -25.63 16 20 Si 0.94 21.43 29.55 -169.99 -5.02 16.41 16 21 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 22 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 23 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 24 C -0.17 -4.03 9.64 -39.39 -0.38 -4.41 16 25 C 0.14 1.59 2.90 -66.95 -0.19 1.40 16 26 H 0.08 1.08 7.79 -51.93 -0.40 0.67 16 27 C 0.07 0.72 6.48 37.16 0.24 0.96 16 28 O -0.53 -7.80 10.34 -59.33 -0.61 -8.41 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.43 8.10 -51.93 -0.42 0.00 16 32 H 0.08 0.54 8.05 -51.93 -0.42 0.12 16 33 H 0.08 0.36 8.14 -51.92 -0.42 -0.06 16 34 H 0.08 0.59 7.48 -51.93 -0.39 0.20 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.09 1.11 8.08 -51.93 -0.42 0.69 16 37 H 0.09 1.24 7.79 -51.93 -0.40 0.83 16 38 H 0.10 1.66 8.06 -52.49 -0.42 1.24 16 39 H 0.11 1.81 8.06 -52.49 -0.42 1.38 16 40 H 0.13 2.92 5.64 -52.49 -0.30 2.63 16 41 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 42 H 0.11 2.55 8.06 -52.49 -0.42 2.12 16 43 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.04 0.40 8.14 -51.93 -0.42 -0.03 16 45 H 0.37 3.82 9.12 45.56 0.42 4.23 16 LS Contribution 369.25 15.07 5.56 5.56 Total: -1.00 -37.50 369.25 -8.35 -45.84 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: -5.96 Total: 6.30 kcal Atomic # 6 Polarization: -13.61 SS G_CDS: -2.33 Total: -15.94 kcal Atomic # 7 Polarization: -34.19 SS G_CDS: 0.26 Total: -33.93 kcal Atomic # 8 Polarization: -23.39 SS G_CDS: -0.86 Total: -24.25 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -37.50 -8.35 -45.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189504284.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.276 kcal (2) G-P(sol) polarization free energy of solvation -37.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds