Wall clock time and date at job start Tue Mar 31 2020 13:31:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 110.64154 * 2 1 4 4 C 1.55155 * 110.72151 * 123.14495 * 2 1 3 5 5 C 1.54905 * 101.58475 * 153.86659 * 4 2 1 6 6 N 1.47428 * 104.82770 * 322.98702 * 5 4 2 7 7 C 1.34783 * 125.64402 * 204.09272 * 6 5 4 8 8 O 1.21277 * 119.99483 * 180.02562 * 7 6 5 9 9 C 1.50695 * 120.00073 * 0.02562 * 7 6 5 10 10 C 1.50706 * 109.46830 * 179.97438 * 9 7 6 11 11 C 1.38331 * 119.95913 * 90.00552 * 10 9 7 12 12 C 1.38277 * 120.13228 * 180.02562 * 11 10 9 13 13 C 1.38123 * 120.07219 * 359.97438 * 12 11 10 14 14 C 1.38856 * 119.93247 * 0.02562 * 13 12 11 15 15 O 1.35749 * 120.07141 * 180.02562 * 14 13 12 16 16 C 1.34834 * 116.99928 * 354.46826 * 15 14 13 17 17 H 1.08000 * 119.99669 * 5.05909 * 16 15 14 18 18 C 1.38654 * 119.99744 * 185.06009 * 16 15 14 19 19 N 1.31547 * 120.00214 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99706 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47064 * 359.97438 * 20 18 16 22 22 H 1.48493 * 109.47122 * 119.99537 * 20 18 16 23 23 H 1.48504 * 109.46641 * 239.99594 * 20 18 16 24 24 C 1.38073 * 119.96755 * 269.72951 * 10 9 7 25 25 C 1.47019 * 108.70479 * 24.36059 * 6 5 4 26 26 H 1.09003 * 109.87881 * 239.29566 * 25 6 5 27 27 C 1.53000 * 109.88548 * 118.12836 * 25 6 5 28 28 O 1.42899 * 109.47001 * 66.45249 * 27 25 6 29 29 H 1.09003 * 109.46729 * 298.31003 * 1 2 3 30 30 H 1.08999 * 109.46683 * 58.31206 * 1 2 3 31 31 H 1.08998 * 109.47114 * 178.31334 * 1 2 3 32 32 H 1.09000 * 111.00510 * 35.78599 * 4 2 1 33 33 H 1.09011 * 111.00098 * 271.93725 * 4 2 1 34 34 H 1.09005 * 110.37024 * 204.15107 * 5 4 2 35 35 H 1.08995 * 110.37067 * 81.82392 * 5 4 2 36 36 H 1.08994 * 109.47522 * 299.99639 * 9 7 6 37 37 H 1.08999 * 109.47267 * 60.00406 * 9 7 6 38 38 H 1.07993 * 119.93103 * 359.97268 * 11 10 9 39 39 H 1.08001 * 119.96639 * 179.97438 * 12 11 10 40 40 H 1.07997 * 120.03615 * 180.02562 * 13 12 11 41 41 H 0.97003 * 120.00478 * 180.02562 * 19 18 16 42 42 H 1.07992 * 120.03750 * 0.02562 * 24 10 9 43 43 H 1.08997 * 109.46719 * 186.45190 * 27 25 6 44 44 H 1.08999 * 109.47130 * 306.45406 * 27 25 6 45 45 H 0.96700 * 114.00111 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0201 0.0000 4 6 2.0790 -0.7934 1.2151 5 6 3.4633 -1.2486 0.6896 6 7 3.2445 -1.5520 -0.7364 7 6 3.9923 -2.3862 -1.4858 8 8 3.7192 -2.5608 -2.6544 9 6 5.1677 -3.1017 -0.8714 10 6 5.8296 -3.9666 -1.9131 11 6 6.8476 -3.4502 -2.6944 12 6 7.4571 -4.2404 -3.6516 13 6 7.0511 -5.5485 -3.8300 14 6 6.0295 -6.0698 -3.0473 15 8 5.6286 -7.3552 -3.2199 16 6 6.1822 -8.0369 -4.2430 17 1 6.9682 -7.5854 -4.8302 18 6 5.7425 -9.3176 -4.5412 19 7 4.7855 -9.8678 -3.8256 20 14 6.5099 -10.2624 -5.9582 21 1 7.5577 -9.4280 -6.5995 22 1 7.1196 -11.5154 -5.4451 23 1 5.4621 -10.5944 -6.9568 24 6 5.4231 -5.2752 -2.0827 25 6 2.0793 -0.7890 -1.2074 26 1 1.3156 -1.4714 -1.5804 27 6 2.5034 0.1777 -2.3149 28 8 2.9154 -0.5654 -3.4638 29 1 -0.3633 0.4874 0.9048 30 1 -0.3633 0.5398 -0.8745 31 1 -0.3633 -1.0272 -0.0302 32 1 1.4452 -1.6512 1.4402 33 1 2.1851 -0.1483 2.0873 34 1 3.7961 -2.1406 1.2205 35 1 4.1932 -0.4465 0.7991 36 1 5.8839 -2.3699 -0.4979 37 1 4.8227 -3.7260 -0.0472 38 1 7.1665 -2.4276 -2.5571 39 1 8.2514 -3.8344 -4.2604 40 1 7.5278 -6.1653 -4.5775 41 1 4.4780 -10.7639 -4.0340 42 1 4.6311 -5.6790 -1.4696 43 1 1.6624 0.8188 -2.5791 44 1 3.3322 0.7921 -1.9632 45 1 3.1988 -0.0155 -4.2070 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000189504284.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:40 Heat of formation + Delta-G solvation = -110.249715 kcal Electronic energy + Delta-G solvation = -26825.382026 eV Core-core repulsion = 23000.536947 eV Total energy + Delta-G solvation = -3824.845080 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.36209 -40.66633 -39.01301 -37.94032 -37.18036 -34.35862 -34.07666 -33.20255 -31.23298 -30.88824 -29.26619 -27.90039 -27.18430 -24.77908 -23.82285 -23.23661 -22.51842 -21.31944 -20.05861 -19.37078 -18.70090 -18.17449 -17.78586 -17.50342 -16.76725 -16.59348 -16.11600 -15.96817 -15.53875 -15.44270 -15.36894 -14.92274 -14.66747 -14.39696 -14.29061 -14.10286 -13.98095 -13.62292 -13.47653 -13.18625 -12.96119 -12.76306 -12.63575 -12.62937 -12.44609 -12.34844 -12.22684 -12.08629 -11.89801 -11.66265 -11.54135 -11.20639 -10.84668 -10.82822 -10.62886 -9.63209 -9.50272 -8.97705 -8.47605 -6.16255 0.52059 0.75624 1.32854 1.42341 1.52220 1.85673 2.08749 2.17553 2.83879 3.14872 3.24196 3.44831 3.54332 3.76490 3.85694 3.99157 4.09833 4.18100 4.20414 4.30541 4.31574 4.39937 4.42755 4.49072 4.56521 4.58054 4.59239 4.61356 4.72678 4.80624 4.92360 5.00962 5.05658 5.10307 5.12678 5.15140 5.27274 5.30045 5.45224 5.54197 5.64782 5.72394 5.75699 6.02512 6.23190 6.66281 6.96602 6.96873 7.44216 7.78793 8.76485 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.020026 B = 0.002776 C = 0.002707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.814702 B =10085.436632 C =10340.079021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.086 4.086 3 H 0.108 0.892 4 C -0.123 4.123 5 C 0.088 3.912 6 N -0.623 5.623 7 C 0.515 3.485 8 O -0.537 6.537 9 C -0.084 4.084 10 C -0.022 4.022 11 C -0.178 4.178 12 C -0.072 4.072 13 C -0.247 4.247 14 C 0.114 3.886 15 O -0.236 6.236 16 C -0.414 4.414 17 H 0.100 0.900 18 C -0.026 4.026 19 N -0.923 5.923 20 Si 1.021 2.979 21 H -0.252 1.252 22 H -0.264 1.264 23 H -0.269 1.269 24 C -0.194 4.194 25 C 0.132 3.868 26 H 0.043 0.957 27 C 0.063 3.937 28 O -0.569 6.569 29 H 0.083 0.917 30 H 0.059 0.941 31 H 0.044 0.956 32 H 0.070 0.930 33 H 0.117 0.883 34 H 0.086 0.914 35 H 0.091 0.909 36 H 0.135 0.865 37 H 0.111 0.889 38 H 0.144 0.856 39 H 0.146 0.854 40 H 0.119 0.881 41 H 0.272 0.728 42 H 0.102 0.898 43 H 0.067 0.933 44 H 0.054 0.946 45 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.027 26.164 11.607 28.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.105 4.105 3 H 0.126 0.874 4 C -0.160 4.160 5 C -0.034 4.034 6 N -0.359 5.359 7 C 0.303 3.697 8 O -0.412 6.412 9 C -0.124 4.124 10 C -0.023 4.023 11 C -0.196 4.196 12 C -0.090 4.090 13 C -0.266 4.266 14 C 0.064 3.936 15 O -0.143 6.143 16 C -0.490 4.490 17 H 0.118 0.882 18 C -0.222 4.222 19 N -0.562 5.562 20 Si 0.840 3.160 21 H -0.175 1.175 22 H -0.189 1.189 23 H -0.194 1.194 24 C -0.213 4.213 25 C 0.028 3.972 26 H 0.061 0.939 27 C -0.015 4.015 28 O -0.375 6.375 29 H 0.102 0.898 30 H 0.078 0.922 31 H 0.063 0.937 32 H 0.089 0.911 33 H 0.135 0.865 34 H 0.105 0.895 35 H 0.109 0.891 36 H 0.153 0.847 37 H 0.130 0.870 38 H 0.162 0.838 39 H 0.164 0.836 40 H 0.136 0.864 41 H 0.081 0.919 42 H 0.120 0.880 43 H 0.085 0.915 44 H 0.072 0.928 45 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -3.545 25.182 11.455 27.891 hybrid contribution 0.074 -0.635 -1.270 1.422 sum -3.470 24.547 10.185 26.801 Atomic orbital electron populations 1.21780 0.93072 1.01876 1.03216 1.22190 0.96779 0.99696 0.91837 0.87421 1.22911 0.94571 1.00596 0.97955 1.22677 0.99188 1.02177 0.79359 1.48643 1.30273 1.44570 1.12391 1.20564 0.83962 0.79073 0.86071 1.90825 1.70423 1.62205 1.17788 1.20644 0.95794 0.98906 0.97015 1.19180 0.95062 0.91444 0.96621 1.20913 0.99409 1.00470 0.98854 1.21122 0.98802 0.92012 0.97036 1.21287 1.01964 0.98501 1.04866 1.19840 0.93739 0.85075 0.94980 1.83935 1.61956 1.19925 1.48453 1.21878 1.19822 0.98208 1.09077 0.88232 1.26642 0.96839 0.96961 1.01802 1.70199 1.28791 1.16112 1.41054 0.84501 0.78126 0.77745 0.75603 1.17483 1.18911 1.19425 1.20177 1.03746 0.94989 1.02430 1.21823 0.87632 0.92748 0.94959 0.93868 1.22683 0.98788 0.93349 0.86708 1.87015 1.87852 1.37002 1.25611 0.89824 0.92241 0.93676 0.91106 0.86508 0.89516 0.89126 0.84707 0.87041 0.83794 0.83579 0.86359 0.91855 0.88022 0.91520 0.92821 0.77620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 9.15 71.98 0.66 -0.77 16 2 C -0.09 -0.95 3.07 -9.60 -0.03 -0.98 16 3 H 0.11 0.76 7.85 -2.39 -0.02 0.74 16 4 C -0.12 -1.10 6.54 31.98 0.21 -0.89 16 5 C 0.09 1.10 6.69 86.85 0.58 1.68 16 6 N -0.62 -14.36 3.06 -788.04 -2.41 -16.77 16 7 C 0.52 16.45 7.58 87.65 0.66 17.12 16 8 O -0.54 -23.31 13.33 20.02 0.27 -23.04 16 9 C -0.08 -2.31 4.84 29.10 0.14 -2.17 16 10 C -0.02 -0.86 4.37 -19.88 -0.09 -0.94 16 11 C -0.18 -6.31 9.70 22.30 0.22 -6.09 16 12 C -0.07 -2.76 10.04 22.25 0.22 -2.54 16 13 C -0.25 -11.92 9.17 22.39 0.21 -11.72 16 14 C 0.11 6.27 6.65 22.58 0.15 6.42 16 15 O -0.24 -15.34 9.76 -22.77 -0.22 -15.56 16 16 C -0.41 -25.75 9.49 67.92 0.64 -25.11 16 17 H 0.10 5.73 5.20 -2.91 -0.02 5.71 16 18 C -0.03 -1.54 5.49 84.83 0.47 -1.07 16 19 N -0.92 -59.52 13.67 21.61 0.30 -59.22 16 20 Si 1.02 45.27 29.55 68.60 2.03 47.30 16 21 H -0.25 -10.33 7.11 99.48 0.71 -9.62 16 22 H -0.26 -11.06 7.11 99.48 0.71 -10.36 16 23 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 24 C -0.19 -9.38 9.64 22.39 0.22 -9.16 16 25 C 0.13 2.80 2.90 45.35 0.13 2.93 16 26 H 0.04 1.22 7.79 -2.39 -0.02 1.20 16 27 C 0.06 1.28 6.48 71.98 0.47 1.75 16 28 O -0.57 -16.76 10.34 -125.94 -1.30 -18.06 16 29 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.04 0.60 8.10 -2.39 -0.02 0.58 16 32 H 0.07 0.79 8.05 -2.39 -0.02 0.77 16 33 H 0.12 0.37 8.14 -2.38 -0.02 0.35 16 34 H 0.09 0.98 7.48 -2.38 -0.02 0.96 16 35 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.14 2.56 8.08 -2.39 -0.02 2.54 16 37 H 0.11 2.69 7.79 -2.39 -0.02 2.67 16 38 H 0.14 3.94 8.06 -2.91 -0.02 3.92 16 39 H 0.15 4.42 8.06 -2.91 -0.02 4.40 16 40 H 0.12 5.73 5.64 -2.91 -0.02 5.72 16 41 H 0.27 15.98 8.31 -92.71 -0.77 15.21 16 42 H 0.10 4.96 8.06 -2.91 -0.02 4.93 16 43 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 44 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 45 H 0.38 7.93 9.12 -74.06 -0.68 7.26 16 Total: -1.00 -90.82 369.25 3.83 -86.99 By element: Atomic # 1 Polarization: 29.59 SS G_CDS: 0.32 Total: 29.92 kcal Atomic # 6 Polarization: -36.41 SS G_CDS: 4.86 Total: -31.55 kcal Atomic # 7 Polarization: -73.87 SS G_CDS: -2.12 Total: -75.99 kcal Atomic # 8 Polarization: -55.41 SS G_CDS: -1.26 Total: -56.67 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -90.82 3.83 -86.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189504284.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.256 kcal (2) G-P(sol) polarization free energy of solvation -90.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds