Wall clock time and date at job start Tue Mar 31 2020 13:31:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 110.78150 * 2 1 4 4 C 1.55165 * 110.72113 * 236.75657 * 2 1 3 5 5 C 1.55127 * 101.48494 * 205.96999 * 4 2 1 6 6 N 1.47418 * 104.72588 * 37.29561 * 5 4 2 7 7 C 1.34775 * 125.64722 * 155.81145 * 6 5 4 8 8 O 1.21289 * 119.99965 * 179.69438 * 7 6 5 9 9 C 1.50695 * 120.00232 * 359.70028 * 7 6 5 10 10 C 1.50702 * 109.47220 * 179.97438 * 9 7 6 11 11 C 1.38321 * 119.96481 * 269.97390 * 10 9 7 12 12 C 1.38283 * 120.14125 * 179.97438 * 11 10 9 13 13 C 1.38114 * 120.06643 * 359.76777 * 12 11 10 14 14 C 1.38868 * 119.92979 * 0.51359 * 13 12 11 15 15 O 1.35747 * 120.06663 * 179.74389 * 14 13 12 16 16 C 1.34833 * 117.00217 * 5.23429 * 15 14 13 17 17 H 1.07998 * 120.00195 * 354.91901 * 16 15 14 18 18 C 1.38661 * 119.99835 * 174.64984 * 16 15 14 19 19 N 1.31552 * 120.00169 * 0.27073 * 18 16 15 20 20 Si 1.86797 * 119.99630 * 180.27384 * 18 16 15 21 21 H 1.48494 * 109.47441 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47340 * 119.99927 * 20 18 16 23 23 H 1.48503 * 109.47119 * 239.99422 * 20 18 16 24 24 C 1.38080 * 119.96767 * 89.99917 * 10 9 7 25 25 C 1.47019 * 108.70138 * 335.55317 * 6 5 4 26 26 H 1.09009 * 109.88342 * 120.85481 * 25 6 5 27 27 C 1.53001 * 109.88205 * 241.86535 * 25 6 5 28 28 O 1.42896 * 109.46983 * 293.54554 * 27 25 6 29 29 H 1.08991 * 109.47165 * 296.76333 * 1 2 3 30 30 H 1.09000 * 109.46778 * 56.76341 * 1 2 3 31 31 H 1.09001 * 109.46987 * 176.75846 * 1 2 3 32 32 H 1.08991 * 111.00566 * 324.21333 * 4 2 1 33 33 H 1.09004 * 110.99866 * 88.02347 * 4 2 1 34 34 H 1.09003 * 110.49582 * 278.45494 * 5 4 2 35 35 H 1.08999 * 110.34060 * 156.06190 * 5 4 2 36 36 H 1.09000 * 109.47448 * 59.99385 * 9 7 6 37 37 H 1.09005 * 109.46728 * 299.99284 * 9 7 6 38 38 H 1.08000 * 119.92906 * 0.02791 * 11 10 9 39 39 H 1.07999 * 119.96278 * 180.02562 * 12 11 10 40 40 H 1.08002 * 120.03972 * 180.27228 * 13 12 11 41 41 H 0.96994 * 120.00175 * 180.02562 * 19 18 16 42 42 H 1.08003 * 120.03456 * 359.95392 * 24 10 9 43 43 H 1.08996 * 109.46797 * 53.55034 * 27 25 6 44 44 H 1.09005 * 109.47149 * 173.54710 * 27 25 6 45 45 H 0.96699 * 113.99781 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9167 1.0191 0.0000 4 6 2.0790 -0.7956 -1.2138 5 6 3.4666 -1.2456 -0.6860 6 7 3.2445 -1.5507 0.7391 7 6 3.9923 -2.3836 1.4898 8 8 3.7195 -2.5560 2.6589 9 6 5.1675 -3.1005 0.8767 10 6 5.8302 -3.9626 1.9201 11 6 6.8488 -3.4443 2.6992 12 6 7.4590 -4.2319 3.6581 13 6 7.0495 -5.5378 3.8439 14 6 6.0311 -6.0629 3.0593 15 8 5.6300 -7.3476 3.2361 16 6 6.1843 -8.0266 4.2607 17 1 6.9711 -7.5738 4.8457 18 6 5.7401 -9.3039 4.5668 19 7 4.7817 -9.8555 3.8543 20 14 6.5028 -10.2415 5.9911 21 1 7.5531 -9.4067 6.6276 22 1 5.4528 -10.5636 6.9906 23 1 7.1092 -11.5000 5.4873 24 6 5.4202 -5.2692 2.0971 25 6 2.0761 -0.7912 1.2072 26 1 1.3140 -1.4757 1.5801 27 6 2.4944 0.1757 2.3168 28 8 2.9050 -0.5673 3.4662 29 1 -0.3633 0.4627 0.9175 30 1 -0.3633 0.5633 -0.8596 31 1 -0.3633 -1.0260 -0.0581 32 1 1.4452 -1.6536 -1.4375 33 1 2.1844 -0.1521 -2.0873 34 1 4.1947 -0.4415 -0.7928 35 1 3.8031 -2.1362 -1.2167 36 1 5.8837 -2.3694 0.5015 37 1 4.8222 -3.7263 0.0537 38 1 7.1676 -2.4220 2.5589 39 1 8.2538 -3.8242 4.2651 40 1 7.5235 -6.1512 4.5959 41 1 4.4708 -10.7489 4.0686 42 1 4.6246 -5.6732 1.4887 43 1 3.3226 0.7925 1.9679 44 1 1.6510 0.8145 2.5793 45 1 3.1849 -0.0173 4.2107 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000189504308.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:43 Heat of formation + Delta-G solvation = -110.107223 kcal Electronic energy + Delta-G solvation = -26827.442369 eV Core-core repulsion = 23002.603469 eV Total energy + Delta-G solvation = -3824.838901 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.36119 -40.66619 -39.01157 -37.93851 -37.17789 -34.35800 -34.07775 -33.20278 -31.22190 -30.88779 -29.26172 -27.89691 -27.18342 -24.78026 -23.82268 -23.23605 -22.51841 -21.32231 -20.05636 -19.37047 -18.70151 -18.17571 -17.78336 -17.50012 -16.76776 -16.59362 -16.11561 -15.96749 -15.54233 -15.44030 -15.37019 -14.91609 -14.66677 -14.39653 -14.28723 -14.09977 -13.98067 -13.62448 -13.47922 -13.19068 -12.96205 -12.76302 -12.63173 -12.62143 -12.44558 -12.34855 -12.22571 -12.08642 -11.89076 -11.66435 -11.54703 -11.20494 -10.84617 -10.82745 -10.62701 -9.63192 -9.50228 -8.97687 -8.47639 -6.16259 0.52066 0.75603 1.32870 1.42305 1.52214 1.85693 2.08814 2.17562 2.83849 3.14759 3.24460 3.45019 3.54398 3.76207 3.85597 3.99189 4.09840 4.18023 4.20348 4.30482 4.31637 4.39951 4.42618 4.48929 4.56520 4.58436 4.59290 4.61337 4.72689 4.80395 4.92236 5.00708 5.05741 5.10568 5.12711 5.15106 5.27353 5.30054 5.45306 5.54221 5.64797 5.72389 5.75698 6.02541 6.23193 6.66377 6.96619 6.96857 7.44304 7.78859 8.76480 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.020010 B = 0.002777 C = 0.002709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.936101 B =10080.547948 C =10333.307896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.086 4.086 3 H 0.108 0.892 4 C -0.122 4.122 5 C 0.087 3.913 6 N -0.623 5.623 7 C 0.515 3.485 8 O -0.537 6.537 9 C -0.084 4.084 10 C -0.023 4.023 11 C -0.178 4.178 12 C -0.072 4.072 13 C -0.247 4.247 14 C 0.113 3.887 15 O -0.236 6.236 16 C -0.414 4.414 17 H 0.100 0.900 18 C -0.026 4.026 19 N -0.923 5.923 20 Si 1.021 2.979 21 H -0.251 1.251 22 H -0.269 1.269 23 H -0.264 1.264 24 C -0.194 4.194 25 C 0.132 3.868 26 H 0.043 0.957 27 C 0.063 3.937 28 O -0.569 6.569 29 H 0.057 0.943 30 H 0.083 0.917 31 H 0.046 0.954 32 H 0.070 0.930 33 H 0.116 0.884 34 H 0.091 0.909 35 H 0.086 0.914 36 H 0.135 0.865 37 H 0.112 0.888 38 H 0.144 0.856 39 H 0.147 0.853 40 H 0.119 0.881 41 H 0.272 0.728 42 H 0.101 0.899 43 H 0.053 0.947 44 H 0.067 0.933 45 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.040 26.135 -11.663 28.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.105 4.105 3 H 0.126 0.874 4 C -0.160 4.160 5 C -0.034 4.034 6 N -0.359 5.359 7 C 0.303 3.697 8 O -0.412 6.412 9 C -0.124 4.124 10 C -0.023 4.023 11 C -0.196 4.196 12 C -0.090 4.090 13 C -0.266 4.266 14 C 0.063 3.937 15 O -0.143 6.143 16 C -0.490 4.490 17 H 0.118 0.882 18 C -0.223 4.223 19 N -0.562 5.562 20 Si 0.840 3.160 21 H -0.175 1.175 22 H -0.194 1.194 23 H -0.189 1.189 24 C -0.213 4.213 25 C 0.028 3.972 26 H 0.062 0.938 27 C -0.016 4.016 28 O -0.375 6.375 29 H 0.076 0.924 30 H 0.102 0.898 31 H 0.065 0.935 32 H 0.089 0.911 33 H 0.135 0.865 34 H 0.109 0.891 35 H 0.105 0.895 36 H 0.153 0.847 37 H 0.130 0.870 38 H 0.162 0.838 39 H 0.164 0.836 40 H 0.136 0.864 41 H 0.081 0.919 42 H 0.120 0.880 43 H 0.072 0.928 44 H 0.085 0.915 45 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -3.556 25.155 -11.509 27.890 hybrid contribution 0.071 -0.631 1.277 1.426 sum -3.485 24.523 -10.232 26.800 Atomic orbital electron populations 1.21777 0.93073 1.02038 1.03060 1.22194 0.96788 0.99663 0.91843 0.87395 1.22952 0.94534 1.00585 0.97952 1.22721 0.99142 1.02180 0.79361 1.48636 1.30057 1.44703 1.12477 1.20568 0.83967 0.79086 0.86075 1.90830 1.70423 1.62233 1.17744 1.20645 0.95792 0.98919 0.97003 1.19179 0.95065 0.91468 0.96609 1.20914 0.99406 1.00455 0.98859 1.21121 0.98783 0.92047 0.97033 1.21290 1.02063 0.98528 1.04717 1.19838 0.93757 0.85063 0.94994 1.83934 1.61904 1.20037 1.48396 1.21880 1.19658 0.98458 1.08986 0.88229 1.26646 0.96811 0.96953 1.01842 1.70199 1.28665 1.16226 1.41065 0.84500 0.78134 0.77766 0.75571 1.17482 1.19426 1.18917 1.20176 1.03572 0.95026 1.02540 1.21824 0.87583 0.92788 0.94969 0.93849 1.22692 0.98797 0.93367 0.86710 1.87017 1.88003 1.36984 1.25458 0.92398 0.89811 0.93530 0.91077 0.86547 0.89100 0.89516 0.84713 0.87037 0.83791 0.83577 0.86356 0.91856 0.88038 0.92839 0.91533 0.77639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 9.14 71.98 0.66 -0.77 16 2 C -0.09 -0.95 3.07 -9.60 -0.03 -0.98 16 3 H 0.11 0.76 7.85 -2.38 -0.02 0.74 16 4 C -0.12 -1.10 6.54 32.07 0.21 -0.89 16 5 C 0.09 1.10 6.70 86.93 0.58 1.68 16 6 N -0.62 -14.35 3.06 -787.63 -2.41 -16.76 16 7 C 0.51 16.44 7.58 87.66 0.66 17.10 16 8 O -0.54 -23.30 13.31 20.00 0.27 -23.03 16 9 C -0.08 -2.31 4.83 29.10 0.14 -2.17 16 10 C -0.02 -0.86 4.37 -19.88 -0.09 -0.95 16 11 C -0.18 -6.30 9.70 22.30 0.22 -6.09 16 12 C -0.07 -2.77 10.04 22.25 0.22 -2.55 16 13 C -0.25 -11.91 9.17 22.39 0.21 -11.71 16 14 C 0.11 6.26 6.65 22.58 0.15 6.41 16 15 O -0.24 -15.34 9.76 -22.74 -0.22 -15.57 16 16 C -0.41 -25.75 9.49 67.92 0.64 -25.11 16 17 H 0.10 5.73 5.20 -2.91 -0.02 5.71 16 18 C -0.03 -1.54 5.49 84.84 0.47 -1.07 16 19 N -0.92 -59.52 13.67 21.61 0.30 -59.23 16 20 Si 1.02 45.28 29.55 68.60 2.03 47.31 16 21 H -0.25 -10.33 7.11 99.48 0.71 -9.62 16 22 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 23 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 24 C -0.19 -9.37 9.65 22.39 0.22 -9.15 16 25 C 0.13 2.80 2.89 45.34 0.13 2.93 16 26 H 0.04 1.22 7.83 -2.38 -0.02 1.20 16 27 C 0.06 1.28 6.47 71.98 0.47 1.74 16 28 O -0.57 -16.78 10.33 -125.92 -1.30 -18.08 16 29 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.05 0.61 8.10 -2.39 -0.02 0.59 16 32 H 0.07 0.79 8.02 -2.39 -0.02 0.77 16 33 H 0.12 0.37 8.14 -2.38 -0.02 0.35 16 34 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.09 0.97 7.48 -2.39 -0.02 0.96 16 36 H 0.13 2.55 8.08 -2.39 -0.02 2.54 16 37 H 0.11 2.69 7.80 -2.38 -0.02 2.67 16 38 H 0.14 3.94 8.06 -2.91 -0.02 3.91 16 39 H 0.15 4.42 8.06 -2.91 -0.02 4.39 16 40 H 0.12 5.74 5.64 -2.91 -0.02 5.72 16 41 H 0.27 15.98 8.31 -92.71 -0.77 15.21 16 42 H 0.10 4.95 8.06 -2.91 -0.02 4.93 16 43 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 44 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 45 H 0.38 7.95 9.12 -74.06 -0.68 7.28 16 Total: -1.00 -90.81 369.23 3.84 -86.98 By element: Atomic # 1 Polarization: 29.62 SS G_CDS: 0.32 Total: 29.95 kcal Atomic # 6 Polarization: -36.42 SS G_CDS: 4.86 Total: -31.57 kcal Atomic # 7 Polarization: -73.87 SS G_CDS: -2.12 Total: -75.99 kcal Atomic # 8 Polarization: -55.42 SS G_CDS: -1.26 Total: -56.68 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Total: -90.81 3.84 -86.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189504308.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.128 kcal (2) G-P(sol) polarization free energy of solvation -90.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds