Wall clock time and date at job start Tue Mar 31 2020 13:31:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 110.63706 * 2 1 4 4 C 1.55150 * 110.72399 * 123.14738 * 2 1 3 5 5 C 1.54911 * 101.58463 * 153.86459 * 4 2 1 6 6 N 1.47426 * 104.82697 * 322.98903 * 5 4 2 7 7 C 1.34787 * 125.64519 * 204.08881 * 6 5 4 8 8 O 1.21280 * 119.99679 * 180.02562 * 7 6 5 9 9 C 1.50702 * 120.00062 * 0.02849 * 7 6 5 10 10 C 1.50691 * 109.47059 * 179.97438 * 9 7 6 11 11 C 1.38325 * 119.96790 * 270.02207 * 10 9 7 12 12 C 1.38277 * 120.13851 * 179.97438 * 11 10 9 13 13 C 1.38116 * 120.07100 * 359.73970 * 12 11 10 14 14 C 1.38864 * 119.92915 * 0.51381 * 13 12 11 15 15 O 1.35753 * 120.06795 * 179.76302 * 14 13 12 16 16 C 1.34833 * 117.00100 * 5.24105 * 15 14 13 17 17 H 1.08001 * 119.99760 * 354.91774 * 16 15 14 18 18 C 1.38653 * 119.99815 * 174.91924 * 16 15 14 19 19 N 1.31555 * 119.99830 * 180.27673 * 18 16 15 20 20 Si 1.86799 * 120.00228 * 359.97438 * 18 16 15 21 21 H 1.48503 * 109.46900 * 89.99954 * 20 18 16 22 22 H 1.48495 * 109.47284 * 209.99941 * 20 18 16 23 23 H 1.48500 * 109.47030 * 330.00116 * 20 18 16 24 24 C 1.38083 * 119.96429 * 90.00301 * 10 9 7 25 25 C 1.47017 * 108.70668 * 24.35735 * 6 5 4 26 26 H 1.09000 * 109.88401 * 118.12778 * 25 6 5 27 27 C 1.52998 * 109.88255 * 239.29535 * 25 6 5 28 28 O 1.42904 * 109.47221 * 293.54454 * 27 25 6 29 29 H 1.09002 * 109.46741 * 298.30150 * 1 2 3 30 30 H 1.08994 * 109.47693 * 58.30673 * 1 2 3 31 31 H 1.09007 * 109.46799 * 178.31303 * 1 2 3 32 32 H 1.09001 * 111.00425 * 35.78877 * 4 2 1 33 33 H 1.09000 * 111.04059 * 271.95199 * 4 2 1 34 34 H 1.09001 * 110.36942 * 204.15241 * 5 4 2 35 35 H 1.08994 * 110.46085 * 81.87399 * 5 4 2 36 36 H 1.09005 * 109.46930 * 59.99450 * 9 7 6 37 37 H 1.08998 * 109.46707 * 300.00312 * 9 7 6 38 38 H 1.08000 * 119.92741 * 359.95458 * 11 10 9 39 39 H 1.08002 * 119.96671 * 180.02562 * 12 11 10 40 40 H 1.08000 * 120.04090 * 180.25237 * 13 12 11 41 41 H 0.97000 * 119.99824 * 179.72665 * 19 18 16 42 42 H 1.07996 * 120.03363 * 359.97438 * 24 10 9 43 43 H 1.08995 * 109.47125 * 53.54233 * 27 25 6 44 44 H 1.09000 * 109.47425 * 173.54690 * 27 25 6 45 45 H 0.96692 * 114.00359 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0790 -0.7935 1.2150 5 6 3.4633 -1.2486 0.6894 6 7 3.2444 -1.5519 -0.7366 7 6 3.9923 -2.3860 -1.4861 8 8 3.7191 -2.5606 -2.6548 9 6 5.1677 -3.1016 -0.8719 10 6 5.8296 -3.9663 -1.9136 11 6 5.4183 -5.2755 -2.0877 12 6 6.0227 -6.0719 -3.0429 13 6 7.0359 -5.5605 -3.8300 14 6 7.4547 -4.2483 -3.6540 15 8 8.4536 -3.7442 -4.4228 16 6 8.9229 -4.5326 -5.4108 17 1 8.5628 -5.5459 -5.5102 18 6 9.8679 -4.0423 -6.2992 19 7 10.3218 -4.8098 -7.2665 20 14 10.4902 -2.2894 -6.1277 21 1 11.6796 -2.2712 -5.2388 22 1 10.8637 -1.7637 -7.4653 23 1 9.4218 -1.4399 -5.5427 24 6 6.8457 -3.4508 -2.6936 25 6 2.0792 -0.7889 -1.2075 26 1 2.3813 -0.1002 -1.9964 27 6 1.0072 -1.7467 -1.7311 28 8 1.4872 -2.4022 -2.9067 29 1 -0.3633 0.4872 0.9049 30 1 -0.3634 0.5399 -0.8743 31 1 -0.3633 -1.0273 -0.0303 32 1 1.4452 -1.6512 1.4401 33 1 2.1851 -0.1490 2.0876 34 1 3.7961 -2.1406 1.2202 35 1 4.1946 -0.4479 0.7990 36 1 4.8228 -3.7259 -0.0476 37 1 5.8838 -2.3697 -0.4983 38 1 4.6236 -5.6765 -1.4761 39 1 5.6991 -7.0936 -3.1768 40 1 7.5049 -6.1818 -4.5786 41 1 10.9799 -4.4655 -7.8904 42 1 7.1659 -2.4284 -2.5576 43 1 0.7802 -2.4905 -0.9674 44 1 0.1043 -1.1852 -1.9712 45 1 0.8580 -3.0262 -3.2938 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000189504328.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:47 Heat of formation + Delta-G solvation = -77.186024 kcal Electronic energy + Delta-G solvation = -26955.370090 eV Core-core repulsion = 23131.958760 eV Total energy + Delta-G solvation = -3823.411330 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.47012 -39.12874 -37.88378 -36.39754 -36.17520 -33.34040 -32.32818 -31.88492 -30.52598 -29.36441 -28.02308 -26.42175 -25.08723 -24.78780 -23.04796 -21.71482 -20.95280 -19.81871 -18.95578 -17.69815 -17.59493 -16.97909 -16.68535 -16.28331 -15.66385 -15.15127 -14.96877 -14.51618 -14.26077 -14.07009 -13.84113 -13.64386 -13.61422 -13.39553 -13.25964 -12.88046 -12.63348 -12.46399 -12.32614 -12.22757 -12.09015 -11.75907 -11.51216 -11.39141 -11.20739 -11.11267 -10.79936 -10.73742 -10.72690 -10.59995 -10.07432 -9.89149 -9.39259 -9.28788 -8.78580 -8.56519 -8.03201 -7.25141 -6.32543 -3.98897 2.11707 2.39390 2.99531 3.02848 3.29515 3.30944 3.48015 3.93548 4.14984 4.31344 4.32057 4.46475 4.57599 4.83840 4.87364 4.94338 4.96961 5.05724 5.11659 5.17495 5.20354 5.22973 5.27163 5.31552 5.38180 5.41806 5.47591 5.57298 5.67353 5.69261 5.77340 5.80960 5.90601 5.94291 6.21933 6.33853 6.36836 6.63836 6.89619 7.20804 7.32334 7.41782 7.61059 7.72096 7.76234 7.90498 8.13977 8.55040 9.03340 9.67207 10.75501 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.019580 B = 0.002944 C = 0.002840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.690787 B = 9510.178133 C = 9857.997664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.098 4.098 3 H 0.089 0.911 4 C -0.129 4.129 5 C 0.098 3.902 6 N -0.625 5.625 7 C 0.518 3.482 8 O -0.471 6.471 9 C -0.088 4.088 10 C -0.033 4.033 11 C -0.186 4.186 12 C -0.076 4.076 13 C -0.218 4.218 14 C 0.161 3.839 15 O -0.221 6.221 16 C -0.386 4.386 17 H 0.106 0.894 18 C 0.062 3.938 19 N -0.883 5.883 20 Si 0.904 3.096 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.259 1.259 24 C -0.173 4.173 25 C 0.143 3.857 26 H 0.077 0.923 27 C 0.064 3.936 28 O -0.532 6.532 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.077 0.923 35 H 0.068 0.932 36 H 0.093 0.907 37 H 0.094 0.906 38 H 0.103 0.897 39 H 0.109 0.891 40 H 0.132 0.868 41 H 0.278 0.722 42 H 0.112 0.888 43 H 0.040 0.960 44 H 0.050 0.950 45 H 0.364 0.636 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.857 8.327 19.683 29.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.117 4.117 3 H 0.107 0.893 4 C -0.167 4.167 5 C -0.026 4.026 6 N -0.364 5.364 7 C 0.306 3.694 8 O -0.341 6.341 9 C -0.128 4.128 10 C -0.033 4.033 11 C -0.205 4.205 12 C -0.095 4.095 13 C -0.237 4.237 14 C 0.109 3.891 15 O -0.126 6.126 16 C -0.462 4.462 17 H 0.123 0.877 18 C -0.140 4.140 19 N -0.522 5.522 20 Si 0.730 3.270 21 H -0.200 1.200 22 H -0.209 1.209 23 H -0.184 1.184 24 C -0.193 4.193 25 C 0.039 3.961 26 H 0.095 0.905 27 C -0.015 4.015 28 O -0.335 6.335 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.095 0.905 33 H 0.102 0.898 34 H 0.095 0.905 35 H 0.086 0.914 36 H 0.111 0.889 37 H 0.112 0.888 38 H 0.121 0.879 39 H 0.127 0.873 40 H 0.150 0.850 41 H 0.088 0.912 42 H 0.131 0.869 43 H 0.058 0.942 44 H 0.068 0.932 45 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -19.126 8.722 18.869 28.247 hybrid contribution -0.191 0.268 -0.110 0.347 sum -19.318 8.990 18.759 28.388 Atomic orbital electron populations 1.21888 0.93901 1.02412 1.02261 1.22196 0.96400 0.99346 0.93725 0.89305 1.22875 0.96017 1.00308 0.97502 1.22299 0.97391 1.00867 0.82019 1.48624 1.30610 1.46424 1.10746 1.20388 0.83325 0.78956 0.86763 1.90855 1.67591 1.60439 1.15184 1.20568 0.95508 0.98718 0.98017 1.18678 0.95155 0.93550 0.95937 1.20387 1.03034 0.94269 1.02767 1.20717 0.95403 0.98528 0.94825 1.21280 1.01926 0.96342 1.04177 1.18997 0.87557 0.91760 0.90778 1.83566 1.44454 1.43545 1.41061 1.20765 1.22970 0.96938 1.05552 0.87680 1.24445 0.95934 0.99544 0.94110 1.69650 1.30104 1.36846 1.15575 0.86191 0.79713 0.83629 0.77447 1.19953 1.20877 1.18352 1.19930 1.00339 0.99258 0.99737 1.21466 0.85988 0.92520 0.96104 0.90459 1.22654 0.95583 0.94878 0.88405 1.87049 1.44218 1.60374 1.41887 0.92012 0.92051 0.91984 0.90520 0.89765 0.90500 0.91417 0.88891 0.88772 0.87896 0.87265 0.85045 0.91182 0.86945 0.94223 0.93218 0.79065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 7.98 37.16 0.30 -0.44 16 2 C -0.10 -0.63 3.46 -88.78 -0.31 -0.94 16 3 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 4 C -0.13 -0.71 6.54 -24.59 -0.16 -0.87 16 5 C 0.10 0.74 6.69 -2.53 -0.02 0.72 16 6 N -0.63 -7.36 3.08 -163.01 -0.50 -7.86 16 7 C 0.52 8.13 7.59 -10.98 -0.08 8.04 16 8 O -0.47 -9.63 13.12 -18.87 -0.25 -9.88 16 9 C -0.09 -1.24 4.83 -29.04 -0.14 -1.38 16 10 C -0.03 -0.61 4.37 -104.65 -0.46 -1.06 16 11 C -0.19 -3.42 9.70 -39.54 -0.38 -3.80 16 12 C -0.08 -1.51 10.04 -39.61 -0.40 -1.91 16 13 C -0.22 -5.06 9.17 -39.39 -0.36 -5.43 16 14 C 0.16 3.99 6.65 -39.11 -0.26 3.73 16 15 O -0.22 -6.17 8.59 0.03 0.00 -6.17 16 16 C -0.39 -11.41 9.95 30.89 0.31 -11.11 16 17 H 0.11 3.16 5.43 -52.49 -0.29 2.88 16 18 C 0.06 1.82 5.49 -17.52 -0.10 1.72 16 19 N -0.88 -26.42 13.96 55.48 0.77 -25.65 16 20 Si 0.90 22.63 28.62 -169.99 -4.86 17.77 16 21 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.26 -6.59 7.11 56.52 0.40 -6.18 16 24 C -0.17 -3.77 9.65 -39.39 -0.38 -4.15 16 25 C 0.14 1.51 3.28 -66.95 -0.22 1.29 16 26 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 27 C 0.06 0.66 5.31 37.16 0.20 0.86 16 28 O -0.53 -7.61 10.17 -59.66 -0.61 -8.21 16 29 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.06 0.31 7.80 -51.93 -0.41 -0.10 16 31 H 0.06 0.32 6.41 -51.93 -0.33 -0.01 16 32 H 0.08 0.42 8.05 -51.93 -0.42 0.00 16 33 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.08 0.50 7.48 -51.93 -0.39 0.11 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.09 1.04 7.79 -51.93 -0.40 0.63 16 37 H 0.09 1.14 8.08 -51.93 -0.42 0.72 16 38 H 0.10 1.61 8.06 -52.49 -0.42 1.19 16 39 H 0.11 1.83 8.06 -52.49 -0.42 1.41 16 40 H 0.13 3.16 5.64 -52.49 -0.30 2.87 16 41 H 0.28 7.68 8.31 -40.82 -0.34 7.34 16 42 H 0.11 2.32 8.06 -52.49 -0.42 1.90 16 43 H 0.04 0.39 7.76 -51.93 -0.40 -0.02 16 44 H 0.05 0.41 6.45 -51.93 -0.33 0.07 16 45 H 0.36 3.76 9.12 45.56 0.42 4.17 16 LS Contribution 362.75 15.07 5.47 5.47 Total: -1.00 -36.28 362.75 -8.23 -44.51 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -5.79 Total: 4.73 kcal Atomic # 6 Polarization: -12.24 SS G_CDS: -2.46 Total: -14.70 kcal Atomic # 7 Polarization: -33.78 SS G_CDS: 0.27 Total: -33.51 kcal Atomic # 8 Polarization: -23.41 SS G_CDS: -0.85 Total: -24.26 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -4.86 Total: 17.77 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -36.28 -8.23 -44.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189504328.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.676 kcal (2) G-P(sol) polarization free energy of solvation -36.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds