Wall clock time and date at job start Tue Mar 31 2020 13:31:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 110.63706 * 2 1 4 4 C 1.55150 * 110.72399 * 123.14738 * 2 1 3 5 5 C 1.54911 * 101.58463 * 153.86459 * 4 2 1 6 6 N 1.47426 * 104.82697 * 322.98903 * 5 4 2 7 7 C 1.34787 * 125.64519 * 204.08881 * 6 5 4 8 8 O 1.21280 * 119.99679 * 180.02562 * 7 6 5 9 9 C 1.50702 * 120.00062 * 0.02849 * 7 6 5 10 10 C 1.50691 * 109.47059 * 179.97438 * 9 7 6 11 11 C 1.38325 * 119.96790 * 270.02207 * 10 9 7 12 12 C 1.38277 * 120.13851 * 179.97438 * 11 10 9 13 13 C 1.38116 * 120.07100 * 359.73970 * 12 11 10 14 14 C 1.38864 * 119.92915 * 0.51381 * 13 12 11 15 15 O 1.35753 * 120.06795 * 179.76302 * 14 13 12 16 16 C 1.34833 * 117.00100 * 5.24105 * 15 14 13 17 17 H 1.08001 * 119.99760 * 354.91774 * 16 15 14 18 18 C 1.38653 * 119.99815 * 174.91924 * 16 15 14 19 19 N 1.31555 * 119.99830 * 180.27673 * 18 16 15 20 20 Si 1.86799 * 120.00228 * 359.97438 * 18 16 15 21 21 H 1.48503 * 109.46900 * 89.99954 * 20 18 16 22 22 H 1.48495 * 109.47284 * 209.99941 * 20 18 16 23 23 H 1.48500 * 109.47030 * 330.00116 * 20 18 16 24 24 C 1.38083 * 119.96429 * 90.00301 * 10 9 7 25 25 C 1.47017 * 108.70668 * 24.35735 * 6 5 4 26 26 H 1.09000 * 109.88401 * 118.12778 * 25 6 5 27 27 C 1.52998 * 109.88255 * 239.29535 * 25 6 5 28 28 O 1.42904 * 109.47221 * 293.54454 * 27 25 6 29 29 H 1.09002 * 109.46741 * 298.30150 * 1 2 3 30 30 H 1.08994 * 109.47693 * 58.30673 * 1 2 3 31 31 H 1.09007 * 109.46799 * 178.31303 * 1 2 3 32 32 H 1.09001 * 111.00425 * 35.78877 * 4 2 1 33 33 H 1.09000 * 111.04059 * 271.95199 * 4 2 1 34 34 H 1.09001 * 110.36942 * 204.15241 * 5 4 2 35 35 H 1.08994 * 110.46085 * 81.87399 * 5 4 2 36 36 H 1.09005 * 109.46930 * 59.99450 * 9 7 6 37 37 H 1.08998 * 109.46707 * 300.00312 * 9 7 6 38 38 H 1.08000 * 119.92741 * 359.95458 * 11 10 9 39 39 H 1.08002 * 119.96671 * 180.02562 * 12 11 10 40 40 H 1.08000 * 120.04090 * 180.25237 * 13 12 11 41 41 H 0.97000 * 119.99824 * 179.72665 * 19 18 16 42 42 H 1.07996 * 120.03363 * 359.97438 * 24 10 9 43 43 H 1.08995 * 109.47125 * 53.54233 * 27 25 6 44 44 H 1.09000 * 109.47425 * 173.54690 * 27 25 6 45 45 H 0.96692 * 114.00359 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0790 -0.7935 1.2150 5 6 3.4633 -1.2486 0.6894 6 7 3.2444 -1.5519 -0.7366 7 6 3.9923 -2.3860 -1.4861 8 8 3.7191 -2.5606 -2.6548 9 6 5.1677 -3.1016 -0.8719 10 6 5.8296 -3.9663 -1.9136 11 6 5.4183 -5.2755 -2.0877 12 6 6.0227 -6.0719 -3.0429 13 6 7.0359 -5.5605 -3.8300 14 6 7.4547 -4.2483 -3.6540 15 8 8.4536 -3.7442 -4.4228 16 6 8.9229 -4.5326 -5.4108 17 1 8.5628 -5.5459 -5.5102 18 6 9.8679 -4.0423 -6.2992 19 7 10.3218 -4.8098 -7.2665 20 14 10.4902 -2.2894 -6.1277 21 1 11.6796 -2.2712 -5.2388 22 1 10.8637 -1.7637 -7.4653 23 1 9.4218 -1.4399 -5.5427 24 6 6.8457 -3.4508 -2.6936 25 6 2.0792 -0.7889 -1.2075 26 1 2.3813 -0.1002 -1.9964 27 6 1.0072 -1.7467 -1.7311 28 8 1.4872 -2.4022 -2.9067 29 1 -0.3633 0.4872 0.9049 30 1 -0.3634 0.5399 -0.8743 31 1 -0.3633 -1.0273 -0.0303 32 1 1.4452 -1.6512 1.4401 33 1 2.1851 -0.1490 2.0876 34 1 3.7961 -2.1406 1.2202 35 1 4.1946 -0.4479 0.7990 36 1 4.8228 -3.7259 -0.0476 37 1 5.8838 -2.3697 -0.4983 38 1 4.6236 -5.6765 -1.4761 39 1 5.6991 -7.0936 -3.1768 40 1 7.5049 -6.1818 -4.5786 41 1 10.9799 -4.4655 -7.8904 42 1 7.1659 -2.4284 -2.5576 43 1 0.7802 -2.4905 -0.9674 44 1 0.1043 -1.1852 -1.9712 45 1 0.8580 -3.0262 -3.2938 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000189504328.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:46 Heat of formation + Delta-G solvation = -101.921486 kcal Electronic energy + Delta-G solvation = -26956.442700 eV Core-core repulsion = 23131.958760 eV Total energy + Delta-G solvation = -3824.483940 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.42372 -40.79733 -39.13304 -38.03401 -37.08854 -34.49446 -34.18580 -33.27458 -31.20430 -31.08834 -29.11945 -27.55125 -27.07126 -25.48673 -23.85242 -23.32074 -22.47959 -20.76930 -19.85613 -19.61253 -18.82383 -18.54020 -17.70386 -17.16047 -16.89695 -16.61013 -16.51986 -15.91446 -15.65862 -15.39206 -15.26430 -14.89305 -14.66990 -14.42617 -14.21144 -14.18819 -14.02709 -13.84464 -13.57927 -13.36113 -13.04509 -12.81672 -12.77242 -12.57635 -12.40442 -12.35968 -12.33337 -11.95985 -11.91384 -11.61029 -11.35329 -11.31938 -10.92998 -10.76679 -10.60559 -9.66557 -9.49798 -9.06832 -8.51495 -6.24093 0.48178 0.69380 1.27504 1.33090 1.49138 1.86946 2.09253 2.26599 2.76485 2.99660 3.16946 3.28559 3.59783 3.69657 3.80514 3.96562 4.06360 4.11437 4.26316 4.28081 4.35047 4.39868 4.43723 4.49978 4.54139 4.57929 4.59800 4.68574 4.72707 4.80713 4.89176 4.94037 4.98071 5.12957 5.19647 5.23416 5.29679 5.38173 5.43731 5.54831 5.64395 5.72155 5.75791 5.90536 6.24094 6.67504 6.82862 6.97949 7.45742 7.58060 8.60492 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.019580 B = 0.002944 C = 0.002840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.690787 B = 9510.178133 C = 9857.997664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.089 4.089 3 H 0.095 0.905 4 C -0.119 4.119 5 C 0.086 3.914 6 N -0.622 5.622 7 C 0.513 3.487 8 O -0.534 6.534 9 C -0.083 4.083 10 C -0.025 4.025 11 C -0.168 4.168 12 C -0.076 4.076 13 C -0.240 4.240 14 C 0.120 3.880 15 O -0.248 6.248 16 C -0.400 4.400 17 H 0.080 0.920 18 C 0.010 3.990 19 N -0.924 5.924 20 Si 0.971 3.029 21 H -0.260 1.260 22 H -0.265 1.265 23 H -0.270 1.270 24 C -0.182 4.182 25 C 0.132 3.868 26 H 0.044 0.956 27 C 0.063 3.937 28 O -0.569 6.569 29 H 0.079 0.921 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.082 0.918 33 H 0.111 0.889 34 H 0.096 0.904 35 H 0.078 0.922 36 H 0.134 0.866 37 H 0.117 0.883 38 H 0.145 0.855 39 H 0.142 0.858 40 H 0.108 0.892 41 H 0.285 0.715 42 H 0.117 0.883 43 H 0.050 0.950 44 H 0.070 0.930 45 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.086 9.651 23.853 33.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.108 4.108 3 H 0.113 0.887 4 C -0.156 4.156 5 C -0.035 4.035 6 N -0.358 5.358 7 C 0.301 3.699 8 O -0.409 6.409 9 C -0.123 4.123 10 C -0.026 4.026 11 C -0.187 4.187 12 C -0.094 4.094 13 C -0.259 4.259 14 C 0.071 3.929 15 O -0.156 6.156 16 C -0.476 4.476 17 H 0.098 0.902 18 C -0.188 4.188 19 N -0.565 5.565 20 Si 0.793 3.207 21 H -0.185 1.185 22 H -0.190 1.190 23 H -0.194 1.194 24 C -0.201 4.201 25 C 0.028 3.972 26 H 0.062 0.938 27 C -0.016 4.016 28 O -0.374 6.374 29 H 0.098 0.902 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.101 0.899 33 H 0.129 0.871 34 H 0.114 0.886 35 H 0.096 0.904 36 H 0.152 0.848 37 H 0.135 0.865 38 H 0.163 0.837 39 H 0.159 0.841 40 H 0.126 0.874 41 H 0.095 0.905 42 H 0.135 0.865 43 H 0.068 0.932 44 H 0.088 0.912 45 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -21.397 10.053 23.119 33.067 hybrid contribution 0.221 -0.199 -1.186 1.223 sum -21.177 9.854 21.933 32.041 Atomic orbital electron populations 1.21881 0.92631 1.02661 1.03069 1.22198 0.97310 0.99095 0.92189 0.88701 1.22896 0.94460 1.00727 0.97559 1.22674 0.99178 1.02226 0.79464 1.48644 1.29972 1.44801 1.12388 1.20611 0.83713 0.79316 0.86261 1.90845 1.69410 1.62906 1.17694 1.20644 0.95227 0.99129 0.97275 1.19206 0.93385 0.94370 0.95611 1.20951 1.02402 0.93834 1.01474 1.21100 0.93928 1.00313 0.94071 1.21315 1.03613 0.95967 1.05052 1.19560 0.88300 0.93150 0.91864 1.83504 1.46600 1.43689 1.41789 1.20729 1.23640 0.96503 1.06745 0.90223 1.25274 0.96088 1.03766 0.93719 1.69729 1.31325 1.38755 1.16673 0.85223 0.79015 0.78206 0.78275 1.18458 1.18993 1.19438 1.20228 1.01076 0.99330 0.99497 1.21702 0.85949 0.92340 0.97217 0.93798 1.22817 0.96156 0.95058 0.87537 1.87029 1.45793 1.61120 1.43455 0.90188 0.92394 0.91926 0.89931 0.87089 0.88615 0.90420 0.84773 0.86519 0.83693 0.84059 0.87382 0.90543 0.86513 0.93182 0.91231 0.77859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 7.98 71.98 0.57 -0.40 16 2 C -0.09 -0.87 3.46 -9.60 -0.03 -0.90 16 3 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 4 C -0.12 -0.74 6.54 31.98 0.21 -0.54 16 5 C 0.09 0.93 6.69 86.86 0.58 1.51 16 6 N -0.62 -13.06 3.08 -788.02 -2.43 -15.48 16 7 C 0.51 15.04 7.59 87.66 0.67 15.71 16 8 O -0.53 -21.74 13.12 20.33 0.27 -21.48 16 9 C -0.08 -2.03 4.83 29.10 0.14 -1.89 16 10 C -0.03 -0.88 4.37 -19.88 -0.09 -0.97 16 11 C -0.17 -5.69 9.70 22.30 0.22 -5.47 16 12 C -0.08 -2.93 10.04 22.25 0.22 -2.70 16 13 C -0.24 -11.65 9.17 22.39 0.21 -11.45 16 14 C 0.12 6.22 6.65 22.58 0.15 6.37 16 15 O -0.25 -14.63 8.59 -22.80 -0.20 -14.82 16 16 C -0.40 -25.14 9.95 67.92 0.68 -24.47 16 17 H 0.08 5.23 5.43 -2.91 -0.02 5.22 16 18 C 0.01 0.59 5.49 84.83 0.47 1.05 16 19 N -0.92 -57.61 13.96 21.61 0.30 -57.31 16 20 Si 0.97 48.14 28.62 68.60 1.96 50.10 16 21 H -0.26 -12.16 7.11 99.48 0.71 -11.45 16 22 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 23 H -0.27 -13.66 7.11 99.48 0.71 -12.95 16 24 C -0.18 -7.96 9.65 22.39 0.22 -7.74 16 25 C 0.13 2.59 3.28 45.35 0.15 2.74 16 26 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 27 C 0.06 1.21 5.31 71.98 0.38 1.60 16 28 O -0.57 -16.30 10.17 -125.62 -1.28 -17.58 16 29 H 0.08 0.29 8.14 -2.39 -0.02 0.27 16 30 H 0.06 0.44 7.80 -2.39 -0.02 0.42 16 31 H 0.06 0.43 6.41 -2.38 -0.02 0.42 16 32 H 0.08 0.48 8.05 -2.39 -0.02 0.46 16 33 H 0.11 0.19 8.14 -2.39 -0.02 0.17 16 34 H 0.10 0.71 7.48 -2.39 -0.02 0.69 16 35 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.13 2.19 7.79 -2.38 -0.02 2.17 16 37 H 0.12 2.36 8.08 -2.39 -0.02 2.34 16 38 H 0.15 3.76 8.06 -2.91 -0.02 3.74 16 39 H 0.14 4.44 8.06 -2.91 -0.02 4.41 16 40 H 0.11 5.66 5.64 -2.91 -0.02 5.65 16 41 H 0.28 16.24 8.31 -92.71 -0.77 15.47 16 42 H 0.12 4.87 8.06 -2.91 -0.02 4.85 16 43 H 0.05 0.85 7.76 -2.39 -0.02 0.83 16 44 H 0.07 1.03 6.45 -2.39 -0.02 1.01 16 45 H 0.37 7.84 9.12 -74.06 -0.68 7.16 16 Total: -1.00 -85.81 362.75 3.70 -82.11 By element: Atomic # 1 Polarization: 21.67 SS G_CDS: 0.33 Total: 22.01 kcal Atomic # 6 Polarization: -32.28 SS G_CDS: 4.73 Total: -27.55 kcal Atomic # 7 Polarization: -70.67 SS G_CDS: -2.12 Total: -72.79 kcal Atomic # 8 Polarization: -52.67 SS G_CDS: -1.21 Total: -53.88 kcal Atomic # 14 Polarization: 48.14 SS G_CDS: 1.96 Total: 50.10 kcal Total: -85.81 3.70 -82.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189504328.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.811 kcal (2) G-P(sol) polarization free energy of solvation -85.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds