Wall clock time and date at job start Tue Mar 31 2020 13:03:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47446 * 2 1 4 4 O 1.42904 * 109.47355 * 179.97438 * 3 2 1 5 5 C 1.35897 * 116.99768 * 179.97438 * 4 3 2 6 6 C 1.38755 * 120.05957 * 0.02562 * 5 4 3 7 7 C 1.38122 * 119.94647 * 180.02562 * 6 5 4 8 8 C 1.38288 * 120.05491 * 0.02562 * 7 6 5 9 9 C 1.38244 * 120.11091 * 359.95430 * 8 7 6 10 10 C 1.50700 * 119.97291 * 180.02562 * 9 8 7 11 11 C 1.50700 * 109.47363 * 90.00094 * 10 9 8 12 12 O 1.21286 * 119.99450 * 359.97438 * 11 10 9 13 13 N 1.34772 * 120.00116 * 180.02562 * 11 10 9 14 14 C 1.47066 * 136.05397 * 179.97438 * 13 11 10 15 15 C 1.53503 * 87.98596 * 152.84244 * 14 13 11 16 16 O 1.42897 * 114.20466 * 272.48084 * 15 14 13 17 17 C 1.50701 * 114.20491 * 139.65156 * 15 14 13 18 18 H 1.07990 * 120.00399 * 0.02562 * 17 15 14 19 19 C 1.37879 * 119.99442 * 180.02562 * 17 15 14 20 20 N 1.31517 * 120.00173 * 359.97438 * 19 17 15 21 21 Si 1.86802 * 119.99605 * 180.02562 * 19 17 15 22 22 H 1.48494 * 109.47391 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47076 * 119.99902 * 21 19 17 24 24 H 1.48503 * 109.46756 * 239.99303 * 21 19 17 25 25 C 1.47060 * 136.06000 * 359.94777 * 13 11 10 26 26 C 1.38165 * 120.05840 * 0.28107 * 9 8 7 27 27 H 1.08998 * 109.47133 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46865 * 300.00080 * 1 2 3 29 29 H 1.08994 * 109.47331 * 59.99411 * 1 2 3 30 30 H 1.09000 * 109.47064 * 240.00433 * 2 1 3 31 31 H 1.09002 * 109.47505 * 120.00349 * 2 1 3 32 32 H 1.09000 * 109.46635 * 60.00170 * 3 2 1 33 33 H 1.08994 * 109.47336 * 300.00585 * 3 2 1 34 34 H 1.08001 * 120.02654 * 0.04102 * 6 5 4 35 35 H 1.07997 * 119.97365 * 179.97438 * 7 6 5 36 36 H 1.07992 * 119.94440 * 179.97438 * 8 7 6 37 37 H 1.09004 * 109.47013 * 330.00392 * 10 9 8 38 38 H 1.08998 * 109.47212 * 210.00254 * 10 9 8 39 39 H 1.09000 * 113.46827 * 267.61848 * 14 13 11 40 40 H 1.09003 * 113.47151 * 38.06638 * 14 13 11 41 41 H 0.96701 * 113.99865 * 179.97438 * 16 15 14 42 42 H 0.97003 * 119.99434 * 180.02562 * 20 19 17 43 43 H 1.09007 * 113.46761 * 321.93701 * 25 13 11 44 44 H 1.09003 * 113.46830 * 92.37669 * 25 13 11 45 45 H 1.07993 * 120.03169 * 179.74234 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 3.4691 1.4425 0.0006 5 6 4.0860 2.6533 0.0001 6 6 3.3315 3.8178 -0.0003 7 6 3.9609 5.0473 -0.0013 8 6 5.3420 5.1183 -0.0024 9 6 6.0960 3.9596 -0.0015 10 6 7.6009 4.0406 -0.0021 11 6 8.1030 4.0689 1.4185 12 8 7.3162 4.0279 2.3406 13 7 9.4262 4.1409 1.6642 14 6 10.2799 4.1887 2.8608 15 6 11.3954 3.5468 2.0242 16 8 11.3668 2.1182 2.0070 17 6 12.7669 4.1153 2.2831 18 1 12.8958 4.9060 3.0071 19 6 13.8570 3.6257 1.5953 20 7 13.7001 2.6624 0.7139 21 14 15.5571 4.3299 1.9167 22 1 15.4650 5.3955 2.9468 23 1 16.4566 3.2512 2.3989 24 1 16.1012 4.9030 0.6594 25 6 10.6517 4.2058 0.8539 26 6 5.4712 2.7273 -0.0054 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9564 -0.8899 34 1 2.2529 3.7629 0.0003 35 1 3.3741 5.9539 -0.0021 36 1 5.8323 6.0805 -0.0036 37 1 7.9156 4.9484 -0.5169 38 1 8.0113 3.1709 -0.5152 39 1 10.5116 5.2021 3.1886 40 1 9.9257 3.5531 3.6724 41 1 12.0705 1.7171 1.4789 42 1 14.4671 2.3178 0.2304 43 1 10.6137 3.5849 -0.0412 44 1 10.9823 5.2238 0.6477 45 1 6.0607 1.8224 -0.0089 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193971258.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:03:59 Heat of formation + Delta-G solvation = -69.921315 kcal Electronic energy + Delta-G solvation = -25976.883767 eV Core-core repulsion = 22153.787458 eV Total energy + Delta-G solvation = -3823.096309 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.27978 -39.52660 -38.06252 -36.99349 -34.21897 -33.99254 -32.49405 -32.19985 -30.19414 -29.12025 -27.27104 -26.64074 -25.14347 -24.96949 -22.69293 -22.14045 -21.07412 -20.06459 -18.34639 -17.69540 -17.39901 -16.48326 -16.27788 -16.21078 -15.97472 -15.39589 -14.90163 -14.87559 -14.36772 -14.27003 -14.08421 -13.90607 -13.26263 -13.13004 -12.90707 -12.62308 -12.53645 -12.43205 -12.28980 -12.04602 -11.65208 -11.57098 -11.49726 -11.43819 -11.38645 -11.09556 -10.98359 -10.80419 -10.77410 -10.48555 -10.26203 -9.64228 -9.21984 -8.82060 -8.71551 -8.38243 -8.14329 -7.82737 -6.41598 -4.51732 1.34837 1.52243 3.04625 3.12476 3.21840 3.23356 3.26339 3.52362 3.92487 4.17406 4.53865 4.55576 4.75772 4.81538 4.83534 4.87617 5.00396 5.07548 5.11747 5.16780 5.28199 5.33742 5.38432 5.52360 5.59452 5.59993 5.69424 5.71919 5.77613 5.88153 5.94060 6.07645 6.19843 6.31996 6.41340 6.44843 6.50606 6.62433 6.67659 6.69499 6.80650 7.10778 7.41565 7.61958 7.79868 8.50869 8.55294 8.79447 9.19787 9.48717 10.65079 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.026158 B = 0.002286 C = 0.002189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.172019 B =12247.692888 C =12789.853316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.125 4.125 3 C 0.059 3.941 4 O -0.317 6.317 5 C 0.129 3.871 6 C -0.214 4.214 7 C -0.081 4.081 8 C -0.143 4.143 9 C -0.016 4.016 10 C -0.098 4.098 11 C 0.538 3.462 12 O -0.556 6.556 13 N -0.637 5.637 14 C 0.107 3.893 15 C 0.239 3.761 16 O -0.571 6.571 17 C -0.532 4.532 18 H 0.073 0.927 19 C 0.071 3.929 20 N -0.898 5.898 21 Si 0.909 3.091 22 H -0.270 1.270 23 H -0.280 1.280 24 H -0.281 1.281 25 C 0.071 3.929 26 C -0.136 4.136 27 H 0.064 0.936 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.123 0.877 35 H 0.123 0.877 36 H 0.121 0.879 37 H 0.101 0.899 38 H 0.102 0.898 39 H 0.084 0.916 40 H 0.065 0.935 41 H 0.394 0.606 42 H 0.273 0.727 43 H 0.064 0.936 44 H 0.081 0.919 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.863 0.675 -6.090 19.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.162 4.162 3 C -0.016 4.016 4 O -0.231 6.231 5 C 0.084 3.916 6 C -0.232 4.232 7 C -0.099 4.099 8 C -0.161 4.161 9 C -0.017 4.017 10 C -0.138 4.138 11 C 0.327 3.673 12 O -0.435 6.435 13 N -0.370 5.370 14 C -0.015 4.015 15 C 0.197 3.803 16 O -0.384 6.384 17 C -0.570 4.570 18 H 0.091 0.909 19 C -0.131 4.131 20 N -0.539 5.539 21 Si 0.736 3.264 22 H -0.194 1.194 23 H -0.206 1.206 24 H -0.207 1.207 25 C -0.052 4.052 26 C -0.155 4.155 27 H 0.083 0.917 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.141 0.859 35 H 0.141 0.859 36 H 0.139 0.861 37 H 0.119 0.881 38 H 0.121 0.879 39 H 0.102 0.898 40 H 0.084 0.916 41 H 0.250 0.750 42 H 0.084 0.916 43 H 0.083 0.917 44 H 0.099 0.901 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -19.835 0.409 -5.403 20.562 hybrid contribution 1.216 0.492 -0.373 1.364 sum -18.619 0.901 -5.777 19.515 Atomic orbital electron populations 1.21685 0.94333 1.02484 1.02142 1.21491 0.95927 0.94977 1.03846 1.22836 0.78816 0.98673 1.01270 1.86052 1.20988 1.27189 1.88833 1.18863 0.92062 0.83949 0.96711 1.21139 0.99602 0.92496 1.10000 1.20825 0.94409 0.96827 0.97868 1.20887 0.93744 0.97869 1.03588 1.19123 0.94003 0.92487 0.96048 1.20612 0.92005 1.05316 0.95876 1.19785 0.80258 0.76784 0.90461 1.90668 1.54374 1.52016 1.46460 1.49724 1.03627 1.70605 1.13066 1.23309 0.87916 1.00150 0.90122 1.19556 0.91253 0.80396 0.89105 1.86052 1.58068 1.18740 1.75553 1.21475 0.91168 1.20515 1.23871 0.90875 1.25088 1.00016 0.94378 0.93653 1.69274 1.31935 1.27110 1.25571 0.86259 0.82685 0.79107 0.78356 1.19409 1.20622 1.20675 1.24226 0.81038 1.01212 0.98764 1.20255 0.91334 0.98222 1.05640 0.91742 0.92380 0.92428 0.90804 0.90721 0.92139 0.92193 0.85887 0.85935 0.86054 0.88081 0.87930 0.89774 0.91631 0.74989 0.91627 0.91708 0.90056 0.85292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.91 37.16 0.37 -0.48 16 2 C -0.12 -0.97 6.30 -26.73 -0.17 -1.14 16 3 C 0.06 0.56 4.74 37.16 0.18 0.74 16 4 O -0.32 -4.28 10.14 -19.42 -0.20 -4.47 16 5 C 0.13 1.87 6.69 -39.21 -0.26 1.61 16 6 C -0.21 -2.68 9.04 -39.43 -0.36 -3.03 16 7 C -0.08 -1.00 10.04 -39.61 -0.40 -1.40 16 8 C -0.14 -1.99 9.70 -39.56 -0.38 -2.38 16 9 C -0.02 -0.25 4.37 -104.65 -0.46 -0.71 16 10 C -0.10 -1.55 5.66 -29.03 -0.16 -1.71 16 11 C 0.54 10.97 8.07 -10.99 -0.09 10.88 16 12 O -0.56 -13.10 16.81 5.55 0.09 -13.01 16 13 N -0.64 -13.45 3.69 -185.20 -0.68 -14.13 16 14 C 0.11 2.36 8.03 -8.51 -0.07 2.29 16 15 C 0.24 5.69 1.58 -91.24 -0.14 5.55 16 16 O -0.57 -14.74 13.54 -35.23 -0.48 -15.22 16 17 C -0.53 -13.16 8.69 -34.44 -0.30 -13.46 16 18 H 0.07 1.76 7.81 -52.49 -0.41 1.35 16 19 C 0.07 1.74 5.40 -17.82 -0.10 1.65 16 20 N -0.90 -22.47 11.01 55.43 0.61 -21.86 16 21 Si 0.91 19.19 29.54 -169.99 -5.02 14.17 16 22 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 23 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 24 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 25 C 0.07 1.48 7.84 -8.50 -0.07 1.42 16 26 C -0.14 -2.14 9.64 -39.43 -0.38 -2.52 16 27 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.54 7.66 -51.93 -0.40 0.14 16 33 H 0.06 0.49 7.66 -51.93 -0.40 0.09 16 34 H 0.12 1.21 6.30 -52.49 -0.33 0.88 16 35 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 36 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 37 H 0.10 1.35 8.09 -51.93 -0.42 0.93 16 38 H 0.10 1.51 8.08 -51.93 -0.42 1.09 16 39 H 0.08 1.69 8.10 -51.93 -0.42 1.27 16 40 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 41 H 0.39 10.22 6.33 45.56 0.29 10.51 16 42 H 0.27 6.48 8.31 -40.82 -0.34 6.14 16 43 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 44 H 0.08 1.60 8.10 -51.93 -0.42 1.18 16 45 H 0.13 2.01 8.06 -52.49 -0.42 1.58 16 LS Contribution 379.35 15.07 5.72 5.72 Total: -1.00 -29.82 379.35 -9.04 -38.86 By element: Atomic # 1 Polarization: 18.95 SS G_CDS: -6.29 Total: 12.66 kcal Atomic # 6 Polarization: 0.08 SS G_CDS: -2.79 Total: -2.71 kcal Atomic # 7 Polarization: -35.92 SS G_CDS: -0.07 Total: -35.99 kcal Atomic # 8 Polarization: -32.12 SS G_CDS: -0.58 Total: -32.70 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -5.02 Total: 14.17 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -29.82 -9.04 -38.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193971258.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.066 kcal (2) G-P(sol) polarization free energy of solvation -29.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds