Wall clock time and date at job start Tue Mar 31 2020 13:03:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47446 * 2 1 4 4 O 1.42904 * 109.47355 * 179.97438 * 3 2 1 5 5 C 1.35897 * 116.99768 * 179.97438 * 4 3 2 6 6 C 1.38755 * 120.05957 * 0.02562 * 5 4 3 7 7 C 1.38122 * 119.94647 * 180.02562 * 6 5 4 8 8 C 1.38288 * 120.05491 * 0.02562 * 7 6 5 9 9 C 1.38244 * 120.11091 * 359.95430 * 8 7 6 10 10 C 1.50700 * 119.97291 * 180.02562 * 9 8 7 11 11 C 1.50700 * 109.47363 * 90.00094 * 10 9 8 12 12 O 1.21286 * 119.99450 * 359.97438 * 11 10 9 13 13 N 1.34772 * 120.00116 * 180.02562 * 11 10 9 14 14 C 1.47066 * 136.05397 * 179.97438 * 13 11 10 15 15 C 1.53503 * 87.98596 * 152.84244 * 14 13 11 16 16 O 1.42897 * 114.20466 * 272.48084 * 15 14 13 17 17 C 1.50701 * 114.20491 * 139.65156 * 15 14 13 18 18 H 1.07990 * 120.00399 * 0.02562 * 17 15 14 19 19 C 1.37879 * 119.99442 * 180.02562 * 17 15 14 20 20 N 1.31517 * 120.00173 * 359.97438 * 19 17 15 21 21 Si 1.86802 * 119.99605 * 180.02562 * 19 17 15 22 22 H 1.48494 * 109.47391 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47076 * 119.99902 * 21 19 17 24 24 H 1.48503 * 109.46756 * 239.99303 * 21 19 17 25 25 C 1.47060 * 136.06000 * 359.94777 * 13 11 10 26 26 C 1.38165 * 120.05840 * 0.28107 * 9 8 7 27 27 H 1.08998 * 109.47133 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46865 * 300.00080 * 1 2 3 29 29 H 1.08994 * 109.47331 * 59.99411 * 1 2 3 30 30 H 1.09000 * 109.47064 * 240.00433 * 2 1 3 31 31 H 1.09002 * 109.47505 * 120.00349 * 2 1 3 32 32 H 1.09000 * 109.46635 * 60.00170 * 3 2 1 33 33 H 1.08994 * 109.47336 * 300.00585 * 3 2 1 34 34 H 1.08001 * 120.02654 * 0.04102 * 6 5 4 35 35 H 1.07997 * 119.97365 * 179.97438 * 7 6 5 36 36 H 1.07992 * 119.94440 * 179.97438 * 8 7 6 37 37 H 1.09004 * 109.47013 * 330.00392 * 10 9 8 38 38 H 1.08998 * 109.47212 * 210.00254 * 10 9 8 39 39 H 1.09000 * 113.46827 * 267.61848 * 14 13 11 40 40 H 1.09003 * 113.47151 * 38.06638 * 14 13 11 41 41 H 0.96701 * 113.99865 * 179.97438 * 16 15 14 42 42 H 0.97003 * 119.99434 * 180.02562 * 20 19 17 43 43 H 1.09007 * 113.46761 * 321.93701 * 25 13 11 44 44 H 1.09003 * 113.46830 * 92.37669 * 25 13 11 45 45 H 1.07993 * 120.03169 * 179.74234 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 3.4691 1.4425 0.0006 5 6 4.0860 2.6533 0.0001 6 6 3.3315 3.8178 -0.0003 7 6 3.9609 5.0473 -0.0013 8 6 5.3420 5.1183 -0.0024 9 6 6.0960 3.9596 -0.0015 10 6 7.6009 4.0406 -0.0021 11 6 8.1030 4.0689 1.4185 12 8 7.3162 4.0279 2.3406 13 7 9.4262 4.1409 1.6642 14 6 10.2799 4.1887 2.8608 15 6 11.3954 3.5468 2.0242 16 8 11.3668 2.1182 2.0070 17 6 12.7669 4.1153 2.2831 18 1 12.8958 4.9060 3.0071 19 6 13.8570 3.6257 1.5953 20 7 13.7001 2.6624 0.7139 21 14 15.5571 4.3299 1.9167 22 1 15.4650 5.3955 2.9468 23 1 16.4566 3.2512 2.3989 24 1 16.1012 4.9030 0.6594 25 6 10.6517 4.2058 0.8539 26 6 5.4712 2.7273 -0.0054 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9564 -0.8899 34 1 2.2529 3.7629 0.0003 35 1 3.3741 5.9539 -0.0021 36 1 5.8323 6.0805 -0.0036 37 1 7.9156 4.9484 -0.5169 38 1 8.0113 3.1709 -0.5152 39 1 10.5116 5.2021 3.1886 40 1 9.9257 3.5531 3.6724 41 1 12.0705 1.7171 1.4789 42 1 14.4671 2.3178 0.2304 43 1 10.6137 3.5849 -0.0412 44 1 10.9823 5.2238 0.6477 45 1 6.0607 1.8224 -0.0089 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193971258.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:03:59 Heat of formation + Delta-G solvation = -88.165012 kcal Electronic energy + Delta-G solvation = -25977.674873 eV Core-core repulsion = 22153.787458 eV Total energy + Delta-G solvation = -3823.887415 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.49293 -40.99746 -39.43105 -38.34958 -35.87954 -34.88040 -34.12239 -33.66630 -31.25870 -30.66664 -28.62358 -27.45297 -26.87690 -26.60715 -23.67777 -23.04547 -22.19338 -21.54373 -19.97766 -19.27650 -18.73621 -17.92112 -17.26028 -17.24699 -17.19238 -17.04063 -16.52882 -16.34432 -15.96485 -15.29577 -15.08454 -14.89092 -14.86994 -14.48323 -14.19265 -14.11435 -13.78882 -13.46554 -13.40912 -13.28989 -13.07213 -12.90530 -12.79304 -12.74728 -12.45147 -12.24460 -12.22448 -12.17022 -12.12730 -11.70037 -11.54779 -11.39057 -10.96167 -10.65469 -10.23859 -9.82880 -9.57637 -9.17209 -8.27064 -6.43872 0.27692 0.47330 1.46426 1.51270 1.61204 1.63680 1.96962 2.19968 2.41344 2.77921 2.95449 3.57565 3.63111 3.80444 3.85703 3.92328 3.97134 4.06515 4.15098 4.18860 4.27099 4.35544 4.39785 4.47369 4.51176 4.53333 4.58583 4.62654 4.74255 4.80614 4.82497 4.93336 4.94318 5.04779 5.10016 5.15669 5.25234 5.28345 5.34047 5.43287 5.59750 5.73753 5.80423 5.91603 6.45656 6.62406 6.88973 7.14891 7.30234 7.49509 8.79339 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.026158 B = 0.002286 C = 0.002189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.172019 B =12247.692888 C =12789.853316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.124 4.124 3 C 0.051 3.949 4 O -0.338 6.338 5 C 0.117 3.883 6 C -0.210 4.210 7 C -0.078 4.078 8 C -0.154 4.154 9 C -0.035 4.035 10 C -0.088 4.088 11 C 0.533 3.467 12 O -0.592 6.592 13 N -0.639 5.639 14 C 0.106 3.894 15 C 0.216 3.784 16 O -0.588 6.588 17 C -0.550 4.550 18 H 0.075 0.925 19 C 0.031 3.969 20 N -0.918 5.918 21 Si 0.971 3.029 22 H -0.266 1.266 23 H -0.283 1.283 24 H -0.276 1.276 25 C 0.087 3.913 26 C -0.165 4.165 27 H 0.071 0.929 28 H 0.062 0.938 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.153 0.847 35 H 0.158 0.842 36 H 0.137 0.863 37 H 0.129 0.871 38 H 0.108 0.892 39 H 0.104 0.896 40 H 0.048 0.952 41 H 0.389 0.611 42 H 0.277 0.723 43 H 0.065 0.935 44 H 0.099 0.901 45 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.047 2.307 -6.968 21.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.162 4.162 3 C -0.023 4.023 4 O -0.252 6.252 5 C 0.072 3.928 6 C -0.229 4.229 7 C -0.095 4.095 8 C -0.172 4.172 9 C -0.035 4.035 10 C -0.127 4.127 11 C 0.324 3.676 12 O -0.474 6.474 13 N -0.372 5.372 14 C -0.017 4.017 15 C 0.174 3.826 16 O -0.401 6.401 17 C -0.588 4.588 18 H 0.093 0.907 19 C -0.169 4.169 20 N -0.559 5.559 21 Si 0.796 3.204 22 H -0.190 1.190 23 H -0.209 1.209 24 H -0.201 1.201 25 C -0.036 4.036 26 C -0.184 4.184 27 H 0.090 0.910 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.095 0.905 34 H 0.170 0.830 35 H 0.175 0.825 36 H 0.155 0.845 37 H 0.147 0.853 38 H 0.127 0.873 39 H 0.122 0.878 40 H 0.067 0.933 41 H 0.245 0.755 42 H 0.086 0.914 43 H 0.084 0.916 44 H 0.117 0.883 45 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -21.032 2.043 -6.292 22.048 hybrid contribution 1.501 -0.074 -0.063 1.504 sum -19.531 1.969 -6.355 20.633 Atomic orbital electron populations 1.21669 0.92399 1.03263 1.02831 1.21523 0.97475 0.93931 1.03226 1.23145 0.76838 0.99987 1.02356 1.86036 1.23229 1.27180 1.88776 1.19029 0.91910 0.85048 0.96841 1.21500 1.01045 0.91801 1.08538 1.21261 0.94087 0.98106 0.96075 1.21181 0.94704 0.97877 1.03418 1.19192 0.93823 0.93088 0.97409 1.20605 0.92504 1.06933 0.92696 1.20618 0.79467 0.75416 0.92063 1.90639 1.55067 1.53539 1.48109 1.49793 1.04096 1.70782 1.12554 1.23327 0.87694 1.00710 0.89938 1.19862 0.91894 0.79504 0.91298 1.86038 1.57969 1.20335 1.75737 1.21679 0.91917 1.20891 1.24273 0.90706 1.25781 1.03100 0.94644 0.93406 1.69333 1.32864 1.27701 1.25969 0.85297 0.78516 0.78263 0.78282 1.19048 1.20944 1.20117 1.24028 0.80202 1.01738 0.97620 1.20347 0.92409 0.98082 1.07514 0.90973 0.91914 0.91483 0.91118 0.91735 0.91404 0.90535 0.82988 0.82464 0.84521 0.85256 0.87347 0.87801 0.93347 0.75473 0.91351 0.91601 0.88337 0.86699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 9.91 71.98 0.71 -0.67 16 2 C -0.12 -1.83 6.30 30.59 0.19 -1.64 16 3 C 0.05 0.90 4.74 71.98 0.34 1.25 16 4 O -0.34 -9.12 10.14 -92.39 -0.94 -10.06 16 5 C 0.12 3.34 6.69 22.51 0.15 3.50 16 6 C -0.21 -4.82 9.04 22.37 0.20 -4.62 16 7 C -0.08 -1.71 10.04 22.25 0.22 -1.48 16 8 C -0.15 -4.02 9.70 22.28 0.22 -3.80 16 9 C -0.03 -1.06 4.37 -19.88 -0.09 -1.15 16 10 C -0.09 -2.72 5.66 29.10 0.16 -2.56 16 11 C 0.53 21.73 8.07 87.66 0.71 22.44 16 12 O -0.59 -28.26 16.81 -3.05 -0.05 -28.31 16 13 N -0.64 -26.88 3.69 -858.71 -3.17 -30.05 16 14 C 0.11 4.69 8.03 83.18 0.67 5.36 16 15 C 0.22 10.33 1.58 -11.20 -0.02 10.32 16 16 O -0.59 -31.03 13.54 -148.98 -2.02 -33.05 16 17 C -0.55 -27.02 8.69 25.60 0.22 -26.79 16 18 H 0.07 3.56 7.81 -2.92 -0.02 3.54 16 19 C 0.03 1.50 5.40 84.65 0.46 1.96 16 20 N -0.92 -45.79 11.01 21.45 0.24 -45.55 16 21 Si 0.97 38.77 29.54 68.60 2.03 40.80 16 22 H -0.27 -10.39 7.11 99.48 0.71 -9.68 16 23 H -0.28 -11.39 7.11 99.48 0.71 -10.68 16 24 H -0.28 -10.71 7.11 99.48 0.71 -10.01 16 25 C 0.09 3.59 7.84 83.19 0.65 4.24 16 26 C -0.16 -5.31 9.64 22.37 0.22 -5.10 16 27 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.07 1.09 7.66 -2.39 -0.02 1.07 16 33 H 0.08 1.09 7.66 -2.39 -0.02 1.07 16 34 H 0.15 2.49 6.30 -2.91 -0.02 2.47 16 35 H 0.16 2.31 8.06 -2.91 -0.02 2.29 16 36 H 0.14 3.05 8.06 -2.91 -0.02 3.03 16 37 H 0.13 3.20 8.09 -2.38 -0.02 3.18 16 38 H 0.11 3.19 8.08 -2.39 -0.02 3.17 16 39 H 0.10 4.12 8.10 -2.39 -0.02 4.10 16 40 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 41 H 0.39 20.72 6.33 -74.06 -0.47 20.25 16 42 H 0.28 13.01 8.31 -92.71 -0.77 12.24 16 43 H 0.07 2.69 8.14 -2.38 -0.02 2.67 16 44 H 0.10 3.72 8.10 -2.39 -0.02 3.70 16 45 H 0.11 3.84 8.06 -2.91 -0.02 3.81 16 Total: -1.00 -64.43 379.35 1.63 -62.80 By element: Atomic # 1 Polarization: 41.66 SS G_CDS: 0.52 Total: 42.18 kcal Atomic # 6 Polarization: -3.78 SS G_CDS: 5.02 Total: 1.24 kcal Atomic # 7 Polarization: -72.67 SS G_CDS: -2.93 Total: -75.60 kcal Atomic # 8 Polarization: -68.41 SS G_CDS: -3.01 Total: -71.42 kcal Atomic # 14 Polarization: 38.77 SS G_CDS: 2.03 Total: 40.80 kcal Total: -64.43 1.63 -62.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193971258.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.364 kcal (2) G-P(sol) polarization free energy of solvation -64.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds