Wall clock time and date at job start Tue Mar 31 2020 13:23:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 110.27831 * 2 1 4 4 C 1.54944 * 110.30954 * 122.20308 * 2 1 3 5 5 C 1.55313 * 100.94441 * 155.35984 * 4 2 1 6 6 C 1.54383 * 102.24897 * 325.86158 * 5 4 2 7 7 H 1.09000 * 109.90874 * 261.80256 * 6 5 4 8 8 C 1.52997 * 109.83069 * 140.86782 * 6 5 4 9 9 C 1.52995 * 109.47318 * 175.41078 * 8 6 5 10 10 C 1.50704 * 109.47490 * 180.02562 * 9 8 6 11 11 O 1.21289 * 119.99409 * 0.02562 * 10 9 8 12 12 N 1.34776 * 120.00140 * 180.02562 * 10 9 8 13 13 C 1.39921 * 119.99541 * 175.50066 * 12 10 9 14 14 C 1.38960 * 120.04181 * 35.12484 * 13 12 10 15 15 C 1.38155 * 120.07178 * 179.97438 * 14 13 12 16 16 C 1.38169 * 120.13887 * 0.04236 * 15 14 13 17 17 C 1.38918 * 120.07001 * 359.95787 * 16 15 14 18 18 O 1.35750 * 120.03603 * 180.02562 * 17 16 15 19 19 C 1.34824 * 117.00263 * 185.37146 * 18 17 16 20 20 H 1.07998 * 119.99569 * 354.97892 * 19 18 17 21 21 C 1.38650 * 120.00365 * 174.97318 * 19 18 17 22 22 N 1.31559 * 119.99702 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00341 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47111 * 59.99853 * 23 21 19 25 25 H 1.48500 * 109.47276 * 180.02562 * 23 21 19 26 26 H 1.48505 * 109.46775 * 300.00019 * 23 21 19 27 27 C 1.38722 * 120.03130 * 214.85013 * 13 12 10 28 28 O 1.43240 * 107.58907 * 21.35846 * 6 5 4 29 29 H 1.08995 * 109.46864 * 180.63708 * 1 2 3 30 30 H 1.09001 * 109.47044 * 60.63351 * 1 2 3 31 31 H 1.09004 * 109.46660 * 300.63326 * 1 2 3 32 32 H 1.09002 * 111.12381 * 273.27266 * 4 2 1 33 33 H 1.08991 * 111.12992 * 37.43900 * 4 2 1 34 34 H 1.08993 * 110.84840 * 207.67663 * 5 4 2 35 35 H 1.08994 * 111.02321 * 84.12831 * 5 4 2 36 36 H 1.08998 * 109.47340 * 295.41597 * 8 6 5 37 37 H 1.09008 * 109.47015 * 55.41600 * 8 6 5 38 38 H 1.08998 * 109.47339 * 300.00520 * 9 8 6 39 39 H 1.09001 * 109.47012 * 60.00472 * 9 8 6 40 40 H 0.96991 * 120.00216 * 355.49717 * 12 10 9 41 41 H 1.08003 * 119.96441 * 359.97438 * 14 13 12 42 42 H 1.07998 * 119.93819 * 180.02562 * 15 14 13 43 43 H 1.08000 * 119.96778 * 179.97438 * 16 15 14 44 44 H 0.96998 * 120.00221 * 179.97438 * 22 21 19 45 45 H 1.07998 * 120.06912 * 0.02562 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0224 0.0000 4 6 2.0678 -0.7744 1.2296 5 6 3.4700 -1.2033 0.7177 6 6 3.2112 -1.4413 -0.7856 7 1 3.0629 -2.5048 -0.9729 8 6 4.3990 -0.9310 -1.6039 9 6 4.1862 -1.2732 -3.0798 10 6 5.3564 -0.7711 -3.8858 11 8 6.2709 -0.1965 -3.3338 12 7 5.3868 -0.9605 -5.2198 13 6 6.4256 -0.4130 -5.9806 14 6 7.7088 -0.3364 -5.4528 15 6 8.7351 0.2037 -6.2037 16 6 8.4892 0.6699 -7.4808 17 6 7.2086 0.5962 -8.0143 18 8 6.9679 1.0540 -9.2693 19 6 5.6853 1.0558 -9.6848 20 1 4.9148 0.6286 -9.0601 21 6 5.3554 1.6061 -10.9140 22 7 6.2941 2.1260 -11.6751 23 14 3.5783 1.6092 -11.4893 24 1 2.7460 2.3680 -10.5215 25 1 3.4919 2.2497 -12.8262 26 1 3.0842 0.2115 -11.5777 27 6 6.1768 0.0488 -7.2648 28 8 2.0286 -0.7157 -1.1414 29 1 -0.3633 -1.0276 0.0114 30 1 -0.3633 0.5040 -0.8956 31 1 -0.3633 0.5237 0.8843 32 1 2.1497 -0.1225 2.0993 33 1 1.4471 -1.6430 1.4491 34 1 3.7966 -2.1218 1.2052 35 1 4.2001 -0.4075 0.8644 36 1 4.4814 0.1498 -1.4896 37 1 5.3146 -1.4046 -1.2495 38 1 4.1038 -2.3540 -3.1940 39 1 3.2706 -0.7996 -3.4342 40 1 4.6886 -1.4764 -5.6524 41 1 7.9040 -0.6993 -4.4545 42 1 9.7316 0.2618 -5.7915 43 1 9.2934 1.0919 -8.0652 44 1 6.0635 2.5107 -12.5351 45 1 5.1813 -0.0133 -7.6788 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000266548885.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:23:05 Heat of formation + Delta-G solvation = -96.078218 kcal Electronic energy + Delta-G solvation = -25789.665814 eV Core-core repulsion = 21965.435257 eV Total energy + Delta-G solvation = -3824.230557 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.32224 -39.80990 -38.60761 -36.45364 -34.20015 -34.07238 -32.58544 -32.22454 -31.05767 -29.35050 -28.56970 -26.67716 -25.27730 -23.69683 -21.88977 -21.82674 -21.70463 -20.61578 -19.89585 -17.96468 -17.67249 -17.36376 -16.79018 -16.12650 -15.61262 -15.42895 -14.96614 -14.65160 -14.29694 -14.25849 -14.06864 -13.86248 -13.65837 -13.53541 -13.21323 -12.93649 -12.67001 -12.62268 -12.30180 -12.05933 -11.99739 -11.72996 -11.51344 -11.34698 -11.17388 -11.13338 -11.10822 -11.00527 -10.95425 -10.77173 -10.46354 -9.81037 -9.76019 -9.54045 -9.32792 -8.78863 -7.70988 -7.14099 -6.43172 -4.03043 2.00789 2.40629 2.88109 3.12940 3.14956 3.17209 3.30866 3.45467 3.97467 4.13887 4.37646 4.39222 4.59532 4.70181 4.78130 4.79419 4.97344 5.02499 5.09885 5.12686 5.22283 5.29950 5.31576 5.34145 5.38195 5.50092 5.55314 5.62911 5.72865 5.75484 5.82892 5.94870 6.02984 6.07075 6.11883 6.28415 6.31316 6.66629 6.80626 7.00488 7.02525 7.14834 7.33651 7.44498 7.74562 7.84465 8.01051 8.37244 9.02108 9.72574 10.74849 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.014198 B = 0.002549 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1971.689383 B =10982.008159 C =12675.071768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.074 3.926 3 H 0.070 0.930 4 C -0.152 4.152 5 C -0.152 4.152 6 C 0.080 3.920 7 H 0.080 0.920 8 C -0.112 4.112 9 C -0.136 4.136 10 C 0.509 3.491 11 O -0.524 6.524 12 N -0.671 5.671 13 C 0.178 3.822 14 C -0.206 4.206 15 C -0.066 4.066 16 C -0.200 4.200 17 C 0.167 3.833 18 O -0.176 6.176 19 C -0.393 4.393 20 H 0.090 0.910 21 C 0.040 3.960 22 N -0.863 5.863 23 Si 0.940 3.060 24 H -0.270 1.270 25 H -0.278 1.278 26 H -0.270 1.270 27 C -0.257 4.257 28 O -0.374 6.374 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.080 0.920 38 H 0.092 0.908 39 H 0.101 0.899 40 H 0.407 0.593 41 H 0.123 0.877 42 H 0.115 0.885 43 H 0.118 0.882 44 H 0.270 0.730 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.520 -8.375 23.075 26.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.017 3.983 3 H 0.088 0.912 4 C -0.190 4.190 5 C -0.190 4.190 6 C 0.023 3.977 7 H 0.098 0.902 8 C -0.150 4.150 9 C -0.176 4.176 10 C 0.297 3.703 11 O -0.400 6.400 12 N -0.315 5.315 13 C 0.085 3.915 14 C -0.226 4.226 15 C -0.084 4.084 16 C -0.220 4.220 17 C 0.113 3.887 18 O -0.080 6.080 19 C -0.469 4.469 20 H 0.107 0.893 21 C -0.165 4.165 22 N -0.498 5.498 23 Si 0.765 3.235 24 H -0.195 1.195 25 H -0.203 1.203 26 H -0.195 1.195 27 C -0.278 4.278 28 O -0.294 6.294 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.100 0.900 33 H 0.096 0.904 34 H 0.100 0.900 35 H 0.099 0.901 36 H 0.094 0.906 37 H 0.099 0.901 38 H 0.110 0.890 39 H 0.119 0.881 40 H 0.241 0.759 41 H 0.141 0.859 42 H 0.133 0.867 43 H 0.136 0.864 44 H 0.080 0.920 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -8.836 -7.755 22.888 25.731 hybrid contribution -1.239 -0.236 -0.390 1.320 sum -10.075 -7.991 22.498 25.914 Atomic orbital electron populations 1.21886 0.93791 1.02709 1.02465 1.22957 0.94787 0.95719 0.84876 0.91229 1.23317 0.96296 1.00858 0.98518 1.23166 0.97764 1.02922 0.95122 1.22783 0.85414 0.96067 0.93474 0.90173 1.21733 0.97336 1.03021 0.92924 1.21620 0.97489 1.02726 0.95726 1.20838 0.88234 0.79203 0.82023 1.90692 1.37766 1.41210 1.70343 1.43535 1.27030 1.53534 1.07437 1.17454 0.87073 0.96288 0.90729 1.20678 0.91147 1.09462 1.01352 1.20557 0.97944 0.96833 0.93108 1.20261 0.95395 1.09629 0.96695 1.19075 0.92784 0.91448 0.85412 1.84002 1.29351 1.71801 1.22839 1.21226 0.81829 1.40558 1.03280 0.89303 1.25269 0.99929 0.95902 0.95366 1.70027 1.32776 1.35963 1.11033 0.85800 0.80569 0.78850 0.78308 1.19541 1.20275 1.19545 1.20836 1.00847 1.10545 0.95599 1.88455 1.42045 1.64758 1.34102 0.92006 0.91748 0.91372 0.90035 0.90352 0.90002 0.90096 0.90558 0.90131 0.88982 0.88054 0.75853 0.85894 0.86664 0.86416 0.91988 0.85276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.62 37.16 0.36 -0.65 16 2 C 0.07 0.59 4.08 -25.71 -0.10 0.48 16 3 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 4 C -0.15 -0.93 6.57 -24.48 -0.16 -1.09 16 5 C -0.15 -1.01 6.55 -24.78 -0.16 -1.17 16 6 C 0.08 0.67 3.52 -26.01 -0.09 0.58 16 7 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 8 C -0.11 -1.12 4.07 -26.74 -0.11 -1.23 16 9 C -0.14 -1.41 5.61 -27.88 -0.16 -1.57 16 10 C 0.51 7.54 7.67 -10.98 -0.08 7.46 16 11 O -0.52 -9.58 13.42 5.55 0.07 -9.51 16 12 N -0.67 -10.33 5.34 -9.88 -0.05 -10.38 16 13 C 0.18 3.48 6.29 -83.72 -0.53 2.96 16 14 C -0.21 -4.06 8.70 -39.34 -0.34 -4.40 16 15 C -0.07 -1.27 10.03 -39.64 -0.40 -1.67 16 16 C -0.20 -4.39 9.99 -39.35 -0.39 -4.78 16 17 C 0.17 4.12 6.64 -39.13 -0.26 3.86 16 18 O -0.18 -5.08 9.76 0.07 0.00 -5.08 16 19 C -0.39 -10.99 9.49 30.88 0.29 -10.70 16 20 H 0.09 2.29 5.20 -52.49 -0.27 2.01 16 21 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 22 N -0.86 -25.41 13.67 55.48 0.76 -24.65 16 23 Si 0.94 20.51 29.55 -169.99 -5.02 15.49 16 24 H -0.27 -5.74 7.11 56.52 0.40 -5.33 16 25 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 26 H -0.27 -5.67 7.11 56.52 0.40 -5.26 16 27 C -0.26 -5.67 9.08 -39.20 -0.36 -6.02 16 28 O -0.37 -3.79 10.32 -35.23 -0.36 -4.15 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.08 0.44 8.06 -51.93 -0.42 0.02 16 34 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.08 0.55 7.85 -51.93 -0.41 0.15 16 36 H 0.08 0.90 8.10 -51.93 -0.42 0.47 16 37 H 0.08 0.80 8.10 -51.92 -0.42 0.37 16 38 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.10 1.04 7.88 -51.93 -0.41 0.63 16 40 H 0.41 4.93 8.82 -40.82 -0.36 4.57 16 41 H 0.12 2.37 6.23 -52.48 -0.33 2.04 16 42 H 0.12 1.86 8.06 -52.49 -0.42 1.44 16 43 H 0.12 2.46 8.06 -52.49 -0.42 2.04 16 44 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 45 H 0.13 2.79 5.64 -52.49 -0.30 2.49 16 LS Contribution 372.21 15.07 5.61 5.61 Total: -1.00 -33.69 372.21 -8.28 -41.97 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: -6.69 Total: 7.64 kcal Atomic # 6 Polarization: -14.36 SS G_CDS: -2.59 Total: -16.95 kcal Atomic # 7 Polarization: -35.74 SS G_CDS: 0.71 Total: -35.03 kcal Atomic # 8 Polarization: -18.44 SS G_CDS: -0.29 Total: -18.73 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.69 -8.28 -41.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266548885.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.104 kcal (2) G-P(sol) polarization free energy of solvation -33.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds