Wall clock time and date at job start Tue Mar 31 2020 13:23:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.89148 * 2 1 4 4 C 1.54375 * 109.83070 * 239.06400 * 2 1 3 5 5 C 1.55306 * 102.25315 * 219.12748 * 4 2 1 6 6 C 1.54950 * 100.94141 * 34.13216 * 5 4 2 7 7 H 1.08998 * 110.30568 * 82.57040 * 6 5 4 8 8 C 1.52997 * 110.31268 * 204.63842 * 6 5 4 9 9 C 1.52994 * 109.47274 * 185.00001 * 8 6 5 10 10 C 1.50697 * 109.47179 * 179.97438 * 9 8 6 11 11 O 1.21286 * 120.00306 * 0.02562 * 10 9 8 12 12 N 1.34782 * 120.00078 * 179.97438 * 10 9 8 13 13 C 1.39926 * 119.99835 * 175.76965 * 12 10 9 14 14 C 1.38963 * 120.03338 * 214.83546 * 13 12 10 15 15 C 1.38158 * 120.06529 * 179.74710 * 14 13 12 16 16 C 1.38168 * 120.13996 * 0.55241 * 15 14 13 17 17 C 1.38916 * 120.06854 * 359.70506 * 16 15 14 18 18 O 1.35745 * 120.03394 * 179.97438 * 17 16 15 19 19 C 1.34834 * 117.00113 * 5.36040 * 18 17 16 20 20 H 1.08006 * 119.99814 * 354.96520 * 19 18 17 21 21 C 1.38650 * 120.00166 * 174.96650 * 19 18 17 22 22 N 1.31555 * 119.99960 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 119.99966 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.46974 * 89.99909 * 23 21 19 25 25 H 1.48490 * 109.47249 * 209.99951 * 23 21 19 26 26 H 1.48503 * 109.47228 * 330.00250 * 23 21 19 27 27 C 1.38708 * 120.03723 * 35.11266 * 13 12 10 28 28 O 1.43238 * 109.83042 * 120.92675 * 2 1 3 29 29 H 1.09000 * 109.47148 * 180.93618 * 1 2 3 30 30 H 1.09004 * 109.47511 * 300.93328 * 1 2 3 31 31 H 1.08999 * 109.47002 * 60.93637 * 1 2 3 32 32 H 1.09001 * 110.84713 * 100.94271 * 4 2 1 33 33 H 1.09001 * 111.02774 * 337.39790 * 4 2 1 34 34 H 1.09000 * 111.12419 * 276.21744 * 5 4 2 35 35 H 1.08995 * 111.16685 * 152.06990 * 5 4 2 36 36 H 1.09005 * 109.46725 * 65.00030 * 8 6 5 37 37 H 1.09000 * 109.47061 * 305.00565 * 8 6 5 38 38 H 1.09005 * 109.47221 * 60.00333 * 9 8 6 39 39 H 1.09000 * 109.47536 * 300.00273 * 9 8 6 40 40 H 0.96999 * 120.00091 * 355.49270 * 12 10 9 41 41 H 1.08003 * 119.96457 * 0.02562 * 14 13 12 42 42 H 1.08001 * 119.93080 * 180.27406 * 15 14 13 43 43 H 1.07999 * 119.96502 * 179.72178 * 16 15 14 44 44 H 0.97005 * 120.00056 * 180.02562 * 22 21 19 45 45 H 1.07999 * 120.06861 * 359.95658 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9009 1.0249 0.0000 4 6 2.0537 -0.7466 -1.2456 5 6 3.2730 -1.5221 -0.6766 6 6 2.7748 -1.8443 0.7547 7 1 2.1416 -2.7315 0.7441 8 6 3.9626 -2.0520 1.6964 9 6 3.4532 -2.4903 3.0709 10 6 4.6233 -2.6955 3.9982 11 8 5.7533 -2.5091 3.5992 12 7 4.4139 -3.0853 5.2713 13 6 5.5021 -3.3614 6.1064 14 6 5.4116 -4.3724 7.0555 15 6 6.4875 -4.6491 7.8769 16 6 7.6524 -3.9145 7.7653 17 6 7.7473 -2.8990 6.8221 18 8 8.8919 -2.1774 6.7135 19 6 9.9361 -2.5679 7.4720 20 1 9.8147 -3.3683 8.1870 21 6 11.1655 -1.9420 7.3341 22 7 11.3135 -0.9674 6.4629 23 14 12.6119 -2.4825 8.3855 24 1 13.3594 -3.5571 7.6842 25 1 13.5125 -1.3256 8.6209 26 1 12.1136 -2.9948 9.6873 27 6 6.6704 -2.6225 5.9917 28 8 2.0159 -0.6925 1.1559 29 1 -0.3633 -1.0275 0.0168 30 1 -0.3634 0.5283 0.8815 31 1 -0.3633 0.4992 -0.8983 32 1 2.3672 -0.0426 -2.0165 33 1 1.3028 -1.4349 -1.6335 34 1 4.1620 -0.8919 -0.6505 35 1 3.4580 -2.4348 -1.2430 36 1 4.5158 -1.1180 1.7948 37 1 4.6185 -2.8216 1.2896 38 1 2.9000 -3.4244 2.9725 39 1 2.7973 -1.7207 3.4777 40 1 3.5089 -3.1705 5.6099 41 1 4.5008 -4.9454 7.1481 42 1 6.4163 -5.4382 8.6107 43 1 8.4902 -4.1302 8.4118 44 1 12.1738 -0.5298 6.3662 45 1 6.7419 -1.8338 5.2574 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000266548889.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:23:10 Heat of formation + Delta-G solvation = -94.267236 kcal Electronic energy + Delta-G solvation = -25768.848983 eV Core-core repulsion = 21944.696956 eV Total energy + Delta-G solvation = -3824.152027 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.25364 -39.77134 -38.54762 -36.51933 -34.10515 -33.98027 -32.54099 -32.20382 -30.98564 -29.43148 -28.49821 -26.62635 -25.24062 -23.63073 -22.10353 -21.80333 -21.30034 -20.65852 -19.92599 -18.16226 -17.37864 -17.27076 -16.78873 -15.96533 -15.55280 -15.43121 -15.01312 -14.63103 -14.28228 -14.24715 -13.96597 -13.81239 -13.56659 -13.47415 -13.34570 -12.83518 -12.61434 -12.45875 -12.36869 -12.02601 -11.92280 -11.70315 -11.48012 -11.27361 -11.16720 -11.12440 -11.07780 -10.97170 -10.90918 -10.72777 -10.42878 -9.74470 -9.71611 -9.60749 -9.10765 -8.77488 -7.64710 -7.13843 -6.37973 -3.97183 2.06824 2.38742 2.94888 3.16713 3.18125 3.22388 3.31883 3.48604 4.02170 4.18931 4.43077 4.43965 4.61196 4.75409 4.78537 4.86119 4.99613 5.06556 5.16512 5.17743 5.23451 5.30502 5.36455 5.40479 5.47930 5.54460 5.59765 5.66673 5.69495 5.77049 5.87342 5.87893 5.99734 6.13848 6.17452 6.28999 6.43744 6.76301 6.84914 6.94495 7.08435 7.13456 7.38920 7.52660 7.77247 7.85297 8.06966 8.45088 9.06877 9.78801 10.80036 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.018826 B = 0.002314 C = 0.002120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.955625 B =12097.378412 C =13206.613469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.075 3.925 3 H 0.078 0.922 4 C -0.152 4.152 5 C -0.153 4.153 6 C 0.081 3.919 7 H 0.070 0.930 8 C -0.104 4.104 9 C -0.134 4.134 10 C 0.503 3.497 11 O -0.511 6.511 12 N -0.672 5.672 13 C 0.175 3.825 14 C -0.237 4.237 15 C -0.059 4.059 16 C -0.246 4.246 17 C 0.166 3.834 18 O -0.174 6.174 19 C -0.391 4.391 20 H 0.093 0.907 21 C 0.038 3.962 22 N -0.861 5.861 23 Si 0.942 3.058 24 H -0.273 1.273 25 H -0.278 1.278 26 H -0.268 1.268 27 C -0.187 4.187 28 O -0.374 6.374 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.091 0.909 39 H 0.100 0.900 40 H 0.405 0.595 41 H 0.108 0.892 42 H 0.111 0.889 43 H 0.127 0.873 44 H 0.270 0.730 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.220 -2.576 -11.366 24.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.017 3.983 3 H 0.096 0.904 4 C -0.190 4.190 5 C -0.191 4.191 6 C 0.024 3.976 7 H 0.088 0.912 8 C -0.141 4.141 9 C -0.174 4.174 10 C 0.291 3.709 11 O -0.385 6.385 12 N -0.317 5.317 13 C 0.081 3.919 14 C -0.258 4.258 15 C -0.078 4.078 16 C -0.266 4.266 17 C 0.111 3.889 18 O -0.077 6.077 19 C -0.468 4.468 20 H 0.110 0.890 21 C -0.166 4.166 22 N -0.496 5.496 23 Si 0.766 3.234 24 H -0.199 1.199 25 H -0.203 1.203 26 H -0.192 1.192 27 C -0.208 4.208 28 O -0.294 6.294 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.099 0.901 33 H 0.095 0.905 34 H 0.101 0.899 35 H 0.102 0.898 36 H 0.100 0.900 37 H 0.103 0.897 38 H 0.110 0.890 39 H 0.118 0.882 40 H 0.240 0.760 41 H 0.126 0.874 42 H 0.129 0.871 43 H 0.145 0.855 44 H 0.079 0.921 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -20.207 -2.005 -11.720 23.446 hybrid contribution 0.222 -0.483 0.546 0.761 sum -19.985 -2.488 -11.175 23.032 Atomic orbital electron populations 1.22141 0.95068 1.02464 1.02244 1.22696 0.94149 0.96459 0.84996 0.90359 1.23185 0.97943 0.99784 0.98073 1.23309 0.98666 1.01336 0.95770 1.23019 0.92244 0.89111 0.93254 0.91194 1.21513 0.96144 1.03678 0.92811 1.21616 0.96711 1.03683 0.95388 1.20880 0.91292 0.76644 0.82123 1.90790 1.24249 1.47901 1.75572 1.43454 1.08770 1.68134 1.11377 1.17215 0.87697 0.94921 0.92026 1.20277 1.00296 1.01969 1.03212 1.20500 0.92383 0.97684 0.97268 1.21176 0.99785 1.01475 1.04164 1.19155 0.87928 0.89772 0.92006 1.83992 1.16921 1.47822 1.58974 1.21345 0.87220 1.19981 1.18216 0.89014 1.25304 0.97907 0.95962 0.97435 1.70058 1.25043 1.21598 1.32892 0.85707 0.79995 0.78291 0.79377 1.19904 1.20303 1.19206 1.20176 0.92549 1.04498 1.03626 1.88456 1.70560 1.40377 1.29967 0.92285 0.91914 0.91695 0.90135 0.90516 0.89898 0.89842 0.90036 0.89714 0.89042 0.88217 0.75981 0.87434 0.87097 0.85490 0.92057 0.84869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.06 9.44 37.16 0.35 -0.71 16 2 C 0.07 0.60 4.16 -26.01 -0.11 0.49 16 3 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 4 C -0.15 -0.99 6.54 -24.79 -0.16 -1.15 16 5 C -0.15 -1.17 6.57 -24.48 -0.16 -1.33 16 6 C 0.08 0.73 3.40 -25.70 -0.09 0.64 16 7 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 8 C -0.10 -1.14 4.23 -26.74 -0.11 -1.25 16 9 C -0.13 -1.42 5.63 -27.89 -0.16 -1.58 16 10 C 0.50 7.82 7.67 -10.98 -0.08 7.74 16 11 O -0.51 -10.53 13.43 5.55 0.07 -10.45 16 12 N -0.67 -9.98 5.34 -9.88 -0.05 -10.04 16 13 C 0.17 3.36 6.29 -83.72 -0.53 2.84 16 14 C -0.24 -4.16 9.96 -39.34 -0.39 -4.55 16 15 C -0.06 -1.11 10.03 -39.64 -0.40 -1.51 16 16 C -0.25 -5.56 9.17 -39.36 -0.36 -5.92 16 17 C 0.17 4.29 6.64 -39.13 -0.26 4.03 16 18 O -0.17 -5.25 9.76 0.05 0.00 -5.25 16 19 C -0.39 -11.34 9.49 30.88 0.29 -11.05 16 20 H 0.09 2.44 5.20 -52.48 -0.27 2.17 16 21 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 22 N -0.86 -26.19 13.67 55.48 0.76 -25.44 16 23 Si 0.94 21.08 29.55 -169.99 -5.02 16.06 16 24 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 25 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 26 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 27 C -0.19 -4.44 8.64 -39.21 -0.34 -4.78 16 28 O -0.37 -3.90 10.47 -35.23 -0.37 -4.27 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.08 0.43 7.86 -51.93 -0.41 0.02 16 34 H 0.08 0.69 8.06 -51.93 -0.42 0.27 16 35 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.08 1.06 8.10 -51.93 -0.42 0.64 16 37 H 0.08 0.96 8.10 -51.93 -0.42 0.54 16 38 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.10 0.97 7.99 -51.93 -0.42 0.56 16 40 H 0.41 4.26 8.82 -40.82 -0.36 3.90 16 41 H 0.11 1.52 8.06 -52.48 -0.42 1.09 16 42 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 43 H 0.13 2.84 5.63 -52.49 -0.30 2.54 16 44 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 45 H 0.13 3.40 6.23 -52.49 -0.33 3.07 16 LS Contribution 372.45 15.07 5.61 5.61 Total: -1.00 -35.26 372.45 -8.30 -43.56 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: -6.70 Total: 7.33 kcal Atomic # 6 Polarization: -14.52 SS G_CDS: -2.60 Total: -17.12 kcal Atomic # 7 Polarization: -36.18 SS G_CDS: 0.71 Total: -35.47 kcal Atomic # 8 Polarization: -19.68 SS G_CDS: -0.29 Total: -19.97 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -35.26 -8.30 -43.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266548889.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.711 kcal (2) G-P(sol) polarization free energy of solvation -35.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds