Wall clock time and date at job start Tue Mar 31 2020 13:23:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.89148 * 2 1 4 4 C 1.54375 * 109.83070 * 239.06400 * 2 1 3 5 5 C 1.55306 * 102.25315 * 219.12748 * 4 2 1 6 6 C 1.54950 * 100.94141 * 34.13216 * 5 4 2 7 7 H 1.08998 * 110.30568 * 82.57040 * 6 5 4 8 8 C 1.52997 * 110.31268 * 204.63842 * 6 5 4 9 9 C 1.52994 * 109.47274 * 185.00001 * 8 6 5 10 10 C 1.50697 * 109.47179 * 179.97438 * 9 8 6 11 11 O 1.21286 * 120.00306 * 0.02562 * 10 9 8 12 12 N 1.34782 * 120.00078 * 179.97438 * 10 9 8 13 13 C 1.39926 * 119.99835 * 175.76965 * 12 10 9 14 14 C 1.38963 * 120.03338 * 214.83546 * 13 12 10 15 15 C 1.38158 * 120.06529 * 179.74710 * 14 13 12 16 16 C 1.38168 * 120.13996 * 0.55241 * 15 14 13 17 17 C 1.38916 * 120.06854 * 359.70506 * 16 15 14 18 18 O 1.35745 * 120.03394 * 179.97438 * 17 16 15 19 19 C 1.34834 * 117.00113 * 5.36040 * 18 17 16 20 20 H 1.08006 * 119.99814 * 354.96520 * 19 18 17 21 21 C 1.38650 * 120.00166 * 174.96650 * 19 18 17 22 22 N 1.31555 * 119.99960 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 119.99966 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.46974 * 89.99909 * 23 21 19 25 25 H 1.48490 * 109.47249 * 209.99951 * 23 21 19 26 26 H 1.48503 * 109.47228 * 330.00250 * 23 21 19 27 27 C 1.38708 * 120.03723 * 35.11266 * 13 12 10 28 28 O 1.43238 * 109.83042 * 120.92675 * 2 1 3 29 29 H 1.09000 * 109.47148 * 180.93618 * 1 2 3 30 30 H 1.09004 * 109.47511 * 300.93328 * 1 2 3 31 31 H 1.08999 * 109.47002 * 60.93637 * 1 2 3 32 32 H 1.09001 * 110.84713 * 100.94271 * 4 2 1 33 33 H 1.09001 * 111.02774 * 337.39790 * 4 2 1 34 34 H 1.09000 * 111.12419 * 276.21744 * 5 4 2 35 35 H 1.08995 * 111.16685 * 152.06990 * 5 4 2 36 36 H 1.09005 * 109.46725 * 65.00030 * 8 6 5 37 37 H 1.09000 * 109.47061 * 305.00565 * 8 6 5 38 38 H 1.09005 * 109.47221 * 60.00333 * 9 8 6 39 39 H 1.09000 * 109.47536 * 300.00273 * 9 8 6 40 40 H 0.96999 * 120.00091 * 355.49270 * 12 10 9 41 41 H 1.08003 * 119.96457 * 0.02562 * 14 13 12 42 42 H 1.08001 * 119.93080 * 180.27406 * 15 14 13 43 43 H 1.07999 * 119.96502 * 179.72178 * 16 15 14 44 44 H 0.97005 * 120.00056 * 180.02562 * 22 21 19 45 45 H 1.07999 * 120.06861 * 359.95658 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9009 1.0249 0.0000 4 6 2.0537 -0.7466 -1.2456 5 6 3.2730 -1.5221 -0.6766 6 6 2.7748 -1.8443 0.7547 7 1 2.1416 -2.7315 0.7441 8 6 3.9626 -2.0520 1.6964 9 6 3.4532 -2.4903 3.0709 10 6 4.6233 -2.6955 3.9982 11 8 5.7533 -2.5091 3.5992 12 7 4.4139 -3.0853 5.2713 13 6 5.5021 -3.3614 6.1064 14 6 5.4116 -4.3724 7.0555 15 6 6.4875 -4.6491 7.8769 16 6 7.6524 -3.9145 7.7653 17 6 7.7473 -2.8990 6.8221 18 8 8.8919 -2.1774 6.7135 19 6 9.9361 -2.5679 7.4720 20 1 9.8147 -3.3683 8.1870 21 6 11.1655 -1.9420 7.3341 22 7 11.3135 -0.9674 6.4629 23 14 12.6119 -2.4825 8.3855 24 1 13.3594 -3.5571 7.6842 25 1 13.5125 -1.3256 8.6209 26 1 12.1136 -2.9948 9.6873 27 6 6.6704 -2.6225 5.9917 28 8 2.0159 -0.6925 1.1559 29 1 -0.3633 -1.0275 0.0168 30 1 -0.3634 0.5283 0.8815 31 1 -0.3633 0.4992 -0.8983 32 1 2.3672 -0.0426 -2.0165 33 1 1.3028 -1.4349 -1.6335 34 1 4.1620 -0.8919 -0.6505 35 1 3.4580 -2.4348 -1.2430 36 1 4.5158 -1.1180 1.7948 37 1 4.6185 -2.8216 1.2896 38 1 2.9000 -3.4244 2.9725 39 1 2.7973 -1.7207 3.4777 40 1 3.5089 -3.1705 5.6099 41 1 4.5008 -4.9454 7.1481 42 1 6.4163 -5.4382 8.6107 43 1 8.4902 -4.1302 8.4118 44 1 12.1738 -0.5298 6.3662 45 1 6.7419 -1.8338 5.2574 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000266548889.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:23:10 Heat of formation + Delta-G solvation = -118.716666 kcal Electronic energy + Delta-G solvation = -25769.909190 eV Core-core repulsion = 21944.696956 eV Total energy + Delta-G solvation = -3825.212234 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.59307 -40.64224 -40.23289 -38.24644 -35.52805 -34.95440 -34.26854 -33.18360 -31.84175 -31.05468 -30.02541 -27.59274 -27.20456 -24.63963 -23.53578 -22.91672 -22.43855 -21.57478 -21.10912 -19.95877 -19.13365 -18.11174 -17.96835 -17.17157 -16.87645 -16.74425 -16.56463 -15.98121 -15.94883 -15.53223 -15.29112 -15.02443 -14.72911 -14.47295 -14.35806 -14.23428 -14.05068 -13.60065 -13.40698 -13.15911 -13.07116 -12.95929 -12.68446 -12.65729 -12.61844 -12.36998 -12.12098 -12.05407 -11.80376 -11.69863 -11.60055 -11.42216 -11.25198 -10.77124 -10.70921 -10.42881 -9.34902 -8.87769 -8.47349 -6.17271 0.42514 0.69799 1.33475 1.43967 1.52706 1.64367 2.04861 2.20132 2.82279 2.83046 3.16782 3.41910 3.59420 3.72126 3.79508 3.90453 4.12192 4.14406 4.16216 4.32748 4.35919 4.40573 4.42346 4.49773 4.54225 4.69364 4.74000 4.74806 4.78151 4.78830 4.92014 4.97395 5.06824 5.07335 5.11140 5.12566 5.25619 5.32067 5.37650 5.42691 5.48246 5.63122 5.73722 6.02485 6.18844 6.21197 6.50132 6.96093 7.22817 7.79182 8.76688 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.018826 B = 0.002314 C = 0.002120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.955625 B =12097.378412 C =13206.613469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.064 3.936 3 H 0.071 0.929 4 C -0.144 4.144 5 C -0.157 4.157 6 C 0.085 3.915 7 H 0.093 0.907 8 C -0.104 4.104 9 C -0.118 4.118 10 C 0.498 3.502 11 O -0.570 6.570 12 N -0.657 5.657 13 C 0.182 3.818 14 C -0.204 4.204 15 C -0.049 4.049 16 C -0.256 4.256 17 C 0.124 3.876 18 O -0.236 6.236 19 C -0.414 4.414 20 H 0.107 0.893 21 C -0.029 4.029 22 N -0.926 5.926 23 Si 1.025 2.975 24 H -0.263 1.263 25 H -0.271 1.271 26 H -0.248 1.248 27 C -0.216 4.216 28 O -0.396 6.396 29 H 0.062 0.938 30 H 0.054 0.946 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.093 0.907 34 H 0.066 0.934 35 H 0.098 0.902 36 H 0.047 0.953 37 H 0.077 0.923 38 H 0.133 0.867 39 H 0.115 0.885 40 H 0.432 0.568 41 H 0.166 0.834 42 H 0.161 0.839 43 H 0.123 0.877 44 H 0.272 0.728 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.732 -5.734 -10.551 27.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.007 3.993 3 H 0.089 0.911 4 C -0.182 4.182 5 C -0.194 4.194 6 C 0.028 3.972 7 H 0.111 0.889 8 C -0.142 4.142 9 C -0.158 4.158 10 C 0.288 3.712 11 O -0.447 6.447 12 N -0.304 5.304 13 C 0.087 3.913 14 C -0.224 4.224 15 C -0.068 4.068 16 C -0.276 4.276 17 C 0.073 3.927 18 O -0.143 6.143 19 C -0.490 4.490 20 H 0.124 0.876 21 C -0.226 4.226 22 N -0.564 5.564 23 Si 0.844 3.156 24 H -0.188 1.188 25 H -0.196 1.196 26 H -0.171 1.171 27 C -0.238 4.238 28 O -0.317 6.317 29 H 0.081 0.919 30 H 0.073 0.927 31 H 0.099 0.901 32 H 0.108 0.892 33 H 0.111 0.889 34 H 0.085 0.915 35 H 0.117 0.883 36 H 0.066 0.934 37 H 0.096 0.904 38 H 0.151 0.849 39 H 0.133 0.867 40 H 0.272 0.728 41 H 0.183 0.817 42 H 0.178 0.822 43 H 0.141 0.859 44 H 0.081 0.919 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -23.838 -5.193 -10.893 26.718 hybrid contribution 0.963 0.408 0.231 1.071 sum -22.874 -4.785 -10.663 25.687 Atomic orbital electron populations 1.22103 0.93736 1.02830 1.02712 1.22878 0.95222 0.96147 0.85071 0.91140 1.23175 0.97550 0.99921 0.97535 1.23335 0.98620 1.01980 0.95503 1.23031 0.91537 0.89645 0.93027 0.88912 1.21480 0.96947 1.01816 0.93963 1.21649 0.94575 1.06093 0.93449 1.21892 0.91845 0.74858 0.82587 1.90796 1.27123 1.50178 1.76638 1.43411 1.08923 1.67358 1.10710 1.17394 0.87273 0.94125 0.92489 1.20920 1.01706 0.99755 1.00057 1.21057 0.90640 0.97397 0.97668 1.21330 1.01626 1.01237 1.03397 1.19709 0.87458 0.91459 0.94054 1.83959 1.18651 1.50523 1.61167 1.21928 0.87749 1.20647 1.18678 0.87580 1.26752 1.01100 0.95767 0.98963 1.70232 1.26113 1.24056 1.36001 0.84508 0.75228 0.78088 0.77825 1.18816 1.19612 1.17092 1.20199 0.94566 1.05412 1.03595 1.88419 1.70790 1.41017 1.31470 0.91853 0.92688 0.90072 0.89211 0.88889 0.91545 0.88305 0.93373 0.90441 0.84947 0.86672 0.72841 0.81695 0.82173 0.85881 0.91888 0.88381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.76 9.44 71.98 0.68 -1.08 16 2 C 0.06 0.96 4.16 31.06 0.13 1.08 16 3 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 4 C -0.14 -1.62 6.54 31.85 0.21 -1.41 16 5 C -0.16 -2.25 6.57 32.05 0.21 -2.04 16 6 C 0.08 1.40 3.40 31.26 0.11 1.51 16 7 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 8 C -0.10 -2.29 4.23 30.59 0.13 -2.16 16 9 C -0.12 -2.27 5.63 29.85 0.17 -2.10 16 10 C 0.50 15.26 7.67 87.66 0.67 15.93 16 11 O -0.57 -24.85 13.43 -3.05 -0.04 -24.89 16 12 N -0.66 -17.94 5.34 -303.55 -1.62 -19.56 16 13 C 0.18 6.72 6.29 38.14 0.24 6.96 16 14 C -0.20 -6.18 9.96 22.42 0.22 -5.96 16 15 C -0.05 -1.65 10.03 22.23 0.22 -1.43 16 16 C -0.26 -11.57 9.17 22.42 0.21 -11.36 16 17 C 0.12 6.80 6.64 22.56 0.15 6.95 16 18 O -0.24 -15.51 9.76 -22.74 -0.22 -15.73 16 19 C -0.41 -25.48 9.49 67.92 0.64 -24.84 16 20 H 0.11 5.88 5.20 -2.91 -0.02 5.87 16 21 C -0.03 -1.74 5.49 84.83 0.47 -1.28 16 22 N -0.93 -60.35 13.67 21.61 0.30 -60.06 16 23 Si 1.03 44.67 29.55 68.60 2.03 46.70 16 24 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 25 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 26 H -0.25 -9.83 7.11 99.48 0.71 -9.12 16 27 C -0.22 -10.81 8.64 22.51 0.19 -10.62 16 28 O -0.40 -7.83 10.47 -148.98 -1.56 -9.39 16 29 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.05 0.69 8.14 -2.38 -0.02 0.68 16 31 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.09 0.76 7.86 -2.39 -0.02 0.74 16 34 H 0.07 1.15 8.06 -2.39 -0.02 1.14 16 35 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.05 1.36 8.10 -2.38 -0.02 1.34 16 37 H 0.08 1.79 8.10 -2.39 -0.02 1.77 16 38 H 0.13 1.54 8.14 -2.38 -0.02 1.52 16 39 H 0.12 1.95 7.99 -2.39 -0.02 1.93 16 40 H 0.43 7.14 8.82 -92.71 -0.82 6.32 16 41 H 0.17 3.28 8.06 -2.91 -0.02 3.26 16 42 H 0.16 3.88 8.06 -2.91 -0.02 3.85 16 43 H 0.12 5.55 5.63 -2.91 -0.02 5.53 16 44 H 0.27 16.18 8.31 -92.70 -0.77 15.41 16 45 H 0.10 5.53 6.23 -2.91 -0.02 5.51 16 Total: -1.00 -88.20 372.45 3.72 -84.49 By element: Atomic # 1 Polarization: 30.09 SS G_CDS: 0.18 Total: 30.28 kcal Atomic # 6 Polarization: -36.48 SS G_CDS: 4.65 Total: -31.83 kcal Atomic # 7 Polarization: -78.29 SS G_CDS: -1.32 Total: -79.62 kcal Atomic # 8 Polarization: -48.19 SS G_CDS: -1.82 Total: -50.01 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Total: -88.20 3.72 -84.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266548889.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.230 kcal (2) G-P(sol) polarization free energy of solvation -88.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds