Wall clock time and date at job start Tue Mar 31 2020 13:32:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.48475 * 2 1 4 4 C 1.53664 * 109.42838 * 120.17447 * 2 1 3 5 5 C 1.51263 * 108.31473 * 174.75659 * 4 2 1 6 6 O 1.20762 * 120.85031 * 128.61335 * 5 4 2 7 7 C 1.51272 * 118.29898 * 308.34674 * 5 4 2 8 8 C 1.53235 * 108.53885 * 51.59423 * 7 5 4 9 9 C 1.52955 * 109.40260 * 305.37379 * 8 7 5 10 10 H 1.08998 * 109.41764 * 303.49468 * 9 8 7 11 11 C 1.50699 * 109.41346 * 183.70350 * 9 8 7 12 12 O 1.21279 * 119.99953 * 273.51235 * 11 9 8 13 13 N 1.34772 * 119.99977 * 93.51082 * 11 9 8 14 14 C 1.46497 * 120.00139 * 4.94950 * 13 11 9 15 15 C 1.50699 * 109.47524 * 89.99505 * 14 13 11 16 16 H 1.07998 * 119.99816 * 0.02562 * 15 14 13 17 17 C 1.37871 * 120.00276 * 179.97438 * 15 14 13 18 18 N 1.31516 * 120.00340 * 180.02562 * 17 15 14 19 19 Si 1.86807 * 120.00112 * 0.02562 * 17 15 14 20 20 H 1.48493 * 109.47220 * 89.99362 * 19 17 15 21 21 H 1.48503 * 109.47064 * 209.99826 * 19 17 15 22 22 H 1.48506 * 109.46917 * 329.99413 * 19 17 15 23 23 C 1.46502 * 120.00231 * 184.94707 * 13 11 9 24 24 C 1.50697 * 109.47083 * 86.95603 * 23 13 11 25 25 C 1.34513 * 125.79034 * 90.00411 * 24 23 13 26 26 C 1.41391 * 106.84053 * 179.97438 * 25 24 23 27 27 C 1.34512 * 106.84034 * 359.97438 * 26 25 24 28 28 O 1.34306 * 108.42103 * 359.73844 * 27 26 25 29 29 H 1.09002 * 109.46920 * 174.13511 * 1 2 3 30 30 H 1.08996 * 109.47101 * 294.13992 * 1 2 3 31 31 H 1.09006 * 109.46772 * 54.14102 * 1 2 3 32 32 H 1.09005 * 109.78265 * 55.08159 * 4 2 1 33 33 H 1.09000 * 109.69202 * 294.37731 * 4 2 1 34 34 H 1.09004 * 109.62572 * 171.31091 * 7 5 4 35 35 H 1.08998 * 109.62452 * 291.88212 * 7 5 4 36 36 H 1.08995 * 109.48083 * 65.35350 * 8 7 5 37 37 H 1.08999 * 109.47757 * 185.39275 * 8 7 5 38 38 H 1.09003 * 109.47615 * 210.00278 * 14 13 11 39 39 H 1.09003 * 109.46937 * 329.99465 * 14 13 11 40 40 H 0.96995 * 120.00426 * 179.97438 * 18 17 15 41 41 H 1.08996 * 109.47003 * 206.95759 * 23 13 11 42 42 H 1.09006 * 109.46792 * 326.95553 * 23 13 11 43 43 H 1.07992 * 126.57888 * 359.96137 * 25 24 23 44 44 H 1.07997 * 126.57885 * 180.02562 * 26 25 24 45 45 H 1.07994 * 125.78819 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0411 -0.7284 1.2528 5 6 3.5478 -0.8281 1.1631 6 8 4.2478 -0.4680 2.0789 7 6 4.1550 -1.3960 -0.1006 8 6 3.5670 -0.6486 -1.3022 9 6 2.0402 -0.7217 -1.2485 10 1 1.7283 -1.7656 -1.2164 11 6 1.4638 -0.0658 -2.4768 12 8 1.2650 1.1306 -2.4886 13 7 1.1693 -0.8086 -3.5620 14 6 1.3069 -2.2662 -3.5113 15 6 0.0084 -2.8778 -3.0522 16 1 -0.8352 -2.2441 -2.8217 17 6 -0.1031 -4.2463 -2.9275 18 7 -1.2365 -4.7801 -2.5273 19 14 1.3558 -5.3425 -3.3269 20 1 2.1714 -5.5466 -2.1029 21 1 0.8680 -6.6551 -3.8213 22 1 2.1877 -4.6972 -4.3742 23 6 0.7115 -0.1585 -4.7925 24 6 1.9038 0.2433 -5.6219 25 6 2.5028 -0.5150 -6.5576 26 6 3.5703 0.2492 -7.0824 27 6 3.5596 1.4289 -6.4364 28 8 2.5443 1.4221 -5.5572 29 1 -0.3633 -1.0223 -0.1050 30 1 -0.3633 0.4203 0.9378 31 1 -0.3633 0.6020 -0.8329 32 1 1.6101 -1.7285 1.2996 33 1 1.7638 -0.1652 2.1439 34 1 5.2366 -1.2618 -0.0795 35 1 3.9163 -2.4568 -0.1768 36 1 3.8824 0.3943 -1.2714 37 1 3.9209 -1.1084 -2.2249 38 1 1.5550 -2.6426 -4.5038 39 1 2.1006 -2.5321 -2.8132 40 1 -1.3150 -5.7429 -2.4399 41 1 0.0909 -0.8516 -5.3603 42 1 0.1291 0.7277 -4.5402 43 1 2.2222 -1.5156 -6.8515 44 1 4.2613 -0.0555 -7.8545 45 1 4.2475 2.2451 -6.6004 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270848679.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:18 Heat of formation + Delta-G solvation = -70.110050 kcal Electronic energy + Delta-G solvation = -28293.616794 eV Core-core repulsion = 24470.512301 eV Total energy + Delta-G solvation = -3823.104493 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.31443 -40.36034 -39.02535 -36.32412 -35.32613 -32.88973 -32.61822 -32.40436 -30.83667 -29.09008 -27.99167 -26.87188 -25.41881 -22.98259 -22.40420 -21.46267 -21.19150 -20.26971 -19.22904 -18.39618 -17.33243 -16.94422 -16.56991 -16.09143 -15.63781 -15.46604 -15.13475 -14.89302 -14.53214 -14.39834 -14.26814 -13.76102 -13.35435 -12.97587 -12.77318 -12.62603 -12.57062 -12.46400 -12.27281 -12.11823 -12.05758 -11.80515 -11.75264 -11.57908 -11.32778 -10.97876 -10.86073 -10.70859 -10.59107 -10.40949 -10.22565 -9.76351 -9.70154 -9.31431 -9.16839 -8.82494 -8.30741 -7.98087 -6.31159 -4.34014 1.88985 2.01049 2.76143 3.05768 3.08733 3.17448 3.20117 3.36361 3.78103 4.17029 4.17857 4.72848 4.77617 4.86800 4.97131 5.00443 5.06490 5.21189 5.23138 5.30312 5.37069 5.46082 5.53410 5.61071 5.78478 5.86290 5.89778 5.94690 5.95137 5.97483 5.99463 6.12334 6.15005 6.22619 6.28509 6.30539 6.34136 6.52572 6.59330 6.69173 6.72546 7.13580 7.32287 7.38505 7.53883 7.97052 8.28389 8.71679 8.79891 9.27531 10.80971 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.008335 B = 0.006530 C = 0.004573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3358.475028 B = 4287.042619 C = 6120.804093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.061 4.061 3 H 0.079 0.921 4 C -0.166 4.166 5 C 0.366 3.634 6 O -0.468 6.468 7 C -0.169 4.169 8 C -0.100 4.100 9 C -0.114 4.114 10 H 0.118 0.882 11 C 0.533 3.467 12 O -0.555 6.555 13 N -0.588 5.588 14 C 0.207 3.793 15 C -0.544 4.544 16 H 0.081 0.919 17 C 0.080 3.920 18 N -0.887 5.887 19 Si 0.865 3.135 20 H -0.272 1.272 21 H -0.283 1.283 22 H -0.263 1.263 23 C 0.195 3.805 24 C -0.015 4.015 25 C -0.206 4.206 26 C -0.217 4.217 27 C -0.050 4.050 28 O -0.166 6.166 29 H 0.068 0.932 30 H 0.052 0.948 31 H 0.065 0.935 32 H 0.105 0.895 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.104 0.896 36 H 0.071 0.929 37 H 0.078 0.922 38 H 0.035 0.965 39 H 0.032 0.968 40 H 0.267 0.733 41 H 0.115 0.885 42 H 0.092 0.908 43 H 0.147 0.853 44 H 0.143 0.857 45 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.272 6.136 -2.459 10.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.080 4.080 3 H 0.098 0.902 4 C -0.203 4.203 5 C 0.243 3.757 6 O -0.342 6.342 7 C -0.206 4.206 8 C -0.138 4.138 9 C -0.135 4.135 10 H 0.136 0.864 11 C 0.321 3.679 12 O -0.434 6.434 13 N -0.318 5.318 14 C 0.086 3.914 15 C -0.582 4.582 16 H 0.099 0.901 17 C -0.124 4.124 18 N -0.524 5.524 19 Si 0.691 3.309 20 H -0.197 1.197 21 H -0.208 1.208 22 H -0.188 1.188 23 C 0.071 3.929 24 C -0.067 4.067 25 C -0.226 4.226 26 C -0.236 4.236 27 C -0.119 4.119 28 O -0.061 6.061 29 H 0.087 0.913 30 H 0.071 0.929 31 H 0.084 0.916 32 H 0.123 0.877 33 H 0.108 0.892 34 H 0.107 0.893 35 H 0.122 0.878 36 H 0.090 0.910 37 H 0.096 0.904 38 H 0.053 0.947 39 H 0.050 0.950 40 H 0.077 0.923 41 H 0.133 0.867 42 H 0.110 0.890 43 H 0.165 0.835 44 H 0.161 0.839 45 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 8.338 6.987 -1.741 11.016 hybrid contribution 0.818 -1.167 -0.630 1.558 sum 9.156 5.820 -2.371 11.105 Atomic orbital electron populations 1.21870 0.93626 1.03355 1.01889 1.20935 0.97092 0.99086 0.90879 0.90250 1.22511 0.93752 1.03901 1.00158 1.24956 0.91871 0.72212 0.86702 1.90376 1.65586 1.38323 1.39891 1.22322 1.01694 1.02305 0.94308 1.21388 0.93527 1.01213 0.97663 1.21530 0.95349 1.03481 0.93124 0.86443 1.20290 0.77102 0.86524 0.83954 1.90621 1.54461 1.15296 1.83063 1.47971 1.65030 1.08751 1.10021 1.19896 0.98173 0.75319 0.97978 1.21359 0.97711 0.92446 1.46670 0.90063 1.24841 0.95573 0.97762 0.94255 1.69875 1.24834 1.12017 1.45632 0.87028 0.83339 0.80946 0.79604 1.19744 1.20820 1.18768 1.19707 0.89248 0.99173 0.84757 1.23264 0.98865 0.84256 1.00270 1.21657 0.98729 1.01638 1.00543 1.21787 1.01996 0.95280 1.04563 1.23980 0.93277 1.00642 0.93984 1.84121 1.36253 1.35254 1.50440 0.91310 0.92924 0.91609 0.87674 0.89238 0.89261 0.87830 0.91037 0.90384 0.94748 0.94975 0.92261 0.86749 0.88983 0.83487 0.83870 0.78673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.34 8.75 37.16 0.33 -2.01 16 2 C -0.06 -0.90 1.95 -90.29 -0.18 -1.08 16 3 H 0.08 1.23 7.97 -51.93 -0.41 0.82 16 4 C -0.17 -2.16 5.48 -27.26 -0.15 -2.31 16 5 C 0.37 5.12 6.71 -28.48 -0.19 4.93 16 6 O -0.47 -7.81 17.89 6.00 0.11 -7.71 16 7 C -0.17 -2.09 6.17 -27.48 -0.17 -2.26 16 8 C -0.10 -1.39 5.13 -26.63 -0.14 -1.52 16 9 C -0.11 -1.82 1.23 -91.81 -0.11 -1.94 16 10 H 0.12 2.00 6.00 -51.93 -0.31 1.69 16 11 C 0.53 9.94 5.70 -10.99 -0.06 9.88 16 12 O -0.56 -11.49 15.02 5.56 0.08 -11.40 16 13 N -0.59 -11.00 2.45 -176.44 -0.43 -11.43 16 14 C 0.21 4.14 3.84 -5.20 -0.02 4.12 16 15 C -0.54 -12.99 9.70 -34.44 -0.33 -13.32 16 16 H 0.08 2.19 8.06 -52.49 -0.42 1.76 16 17 C 0.08 1.99 5.47 -17.82 -0.10 1.90 16 18 N -0.89 -24.13 13.96 55.43 0.77 -23.35 16 19 Si 0.86 18.38 27.47 -169.99 -4.67 13.71 16 20 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 21 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 22 H -0.26 -5.30 6.54 56.52 0.37 -4.93 16 23 C 0.19 3.34 5.95 -5.19 -0.03 3.31 16 24 C -0.01 -0.24 6.88 -35.63 -0.25 -0.49 16 25 C -0.21 -3.08 10.81 -39.70 -0.43 -3.51 16 26 C -0.22 -2.84 10.91 -39.70 -0.43 -3.27 16 27 C -0.05 -0.66 12.09 29.42 0.36 -0.30 16 28 O -0.17 -2.75 10.65 5.69 0.06 -2.69 16 29 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.06 1.15 6.69 -51.93 -0.35 0.81 16 32 H 0.11 1.29 8.14 -51.93 -0.42 0.87 16 33 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 34 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.10 1.18 8.14 -51.93 -0.42 0.75 16 36 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.08 1.07 8.08 -51.93 -0.42 0.65 16 38 H 0.03 0.69 7.13 -51.93 -0.37 0.32 16 39 H 0.03 0.62 5.54 -51.93 -0.29 0.33 16 40 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 41 H 0.11 1.83 8.05 -51.93 -0.42 1.41 16 42 H 0.09 1.60 7.45 -51.93 -0.39 1.22 16 43 H 0.15 2.06 8.06 -52.49 -0.42 1.63 16 44 H 0.14 1.49 8.06 -52.49 -0.42 1.07 16 45 H 0.20 1.75 8.06 -52.49 -0.42 1.32 16 LS Contribution 369.40 15.07 5.57 5.57 Total: -1.00 -29.88 369.40 -7.19 -37.07 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: -6.77 Total: 8.13 kcal Atomic # 6 Polarization: -5.99 SS G_CDS: -1.91 Total: -7.89 kcal Atomic # 7 Polarization: -35.13 SS G_CDS: 0.34 Total: -34.78 kcal Atomic # 8 Polarization: -22.05 SS G_CDS: 0.25 Total: -21.80 kcal Atomic # 14 Polarization: 18.38 SS G_CDS: -4.67 Total: 13.71 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -29.88 -7.19 -37.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270848679.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.036 kcal (2) G-P(sol) polarization free energy of solvation -29.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds