Wall clock time and date at job start Tue Mar 31 2020 13:32:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.48475 * 2 1 4 4 C 1.53664 * 109.42838 * 120.17447 * 2 1 3 5 5 C 1.51263 * 108.31473 * 174.75659 * 4 2 1 6 6 O 1.20762 * 120.85031 * 128.61335 * 5 4 2 7 7 C 1.51272 * 118.29898 * 308.34674 * 5 4 2 8 8 C 1.53235 * 108.53885 * 51.59423 * 7 5 4 9 9 C 1.52955 * 109.40260 * 305.37379 * 8 7 5 10 10 H 1.08998 * 109.41764 * 303.49468 * 9 8 7 11 11 C 1.50699 * 109.41346 * 183.70350 * 9 8 7 12 12 O 1.21279 * 119.99953 * 273.51235 * 11 9 8 13 13 N 1.34772 * 119.99977 * 93.51082 * 11 9 8 14 14 C 1.46497 * 120.00139 * 4.94950 * 13 11 9 15 15 C 1.50699 * 109.47524 * 89.99505 * 14 13 11 16 16 H 1.07998 * 119.99816 * 0.02562 * 15 14 13 17 17 C 1.37871 * 120.00276 * 179.97438 * 15 14 13 18 18 N 1.31516 * 120.00340 * 180.02562 * 17 15 14 19 19 Si 1.86807 * 120.00112 * 0.02562 * 17 15 14 20 20 H 1.48493 * 109.47220 * 89.99362 * 19 17 15 21 21 H 1.48503 * 109.47064 * 209.99826 * 19 17 15 22 22 H 1.48506 * 109.46917 * 329.99413 * 19 17 15 23 23 C 1.46502 * 120.00231 * 184.94707 * 13 11 9 24 24 C 1.50697 * 109.47083 * 86.95603 * 23 13 11 25 25 C 1.34513 * 125.79034 * 90.00411 * 24 23 13 26 26 C 1.41391 * 106.84053 * 179.97438 * 25 24 23 27 27 C 1.34512 * 106.84034 * 359.97438 * 26 25 24 28 28 O 1.34306 * 108.42103 * 359.73844 * 27 26 25 29 29 H 1.09002 * 109.46920 * 174.13511 * 1 2 3 30 30 H 1.08996 * 109.47101 * 294.13992 * 1 2 3 31 31 H 1.09006 * 109.46772 * 54.14102 * 1 2 3 32 32 H 1.09005 * 109.78265 * 55.08159 * 4 2 1 33 33 H 1.09000 * 109.69202 * 294.37731 * 4 2 1 34 34 H 1.09004 * 109.62572 * 171.31091 * 7 5 4 35 35 H 1.08998 * 109.62452 * 291.88212 * 7 5 4 36 36 H 1.08995 * 109.48083 * 65.35350 * 8 7 5 37 37 H 1.08999 * 109.47757 * 185.39275 * 8 7 5 38 38 H 1.09003 * 109.47615 * 210.00278 * 14 13 11 39 39 H 1.09003 * 109.46937 * 329.99465 * 14 13 11 40 40 H 0.96995 * 120.00426 * 179.97438 * 18 17 15 41 41 H 1.08996 * 109.47003 * 206.95759 * 23 13 11 42 42 H 1.09006 * 109.46792 * 326.95553 * 23 13 11 43 43 H 1.07992 * 126.57888 * 359.96137 * 25 24 23 44 44 H 1.07997 * 126.57885 * 180.02562 * 26 25 24 45 45 H 1.07994 * 125.78819 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0411 -0.7284 1.2528 5 6 3.5478 -0.8281 1.1631 6 8 4.2478 -0.4680 2.0789 7 6 4.1550 -1.3960 -0.1006 8 6 3.5670 -0.6486 -1.3022 9 6 2.0402 -0.7217 -1.2485 10 1 1.7283 -1.7656 -1.2164 11 6 1.4638 -0.0658 -2.4768 12 8 1.2650 1.1306 -2.4886 13 7 1.1693 -0.8086 -3.5620 14 6 1.3069 -2.2662 -3.5113 15 6 0.0084 -2.8778 -3.0522 16 1 -0.8352 -2.2441 -2.8217 17 6 -0.1031 -4.2463 -2.9275 18 7 -1.2365 -4.7801 -2.5273 19 14 1.3558 -5.3425 -3.3269 20 1 2.1714 -5.5466 -2.1029 21 1 0.8680 -6.6551 -3.8213 22 1 2.1877 -4.6972 -4.3742 23 6 0.7115 -0.1585 -4.7925 24 6 1.9038 0.2433 -5.6219 25 6 2.5028 -0.5150 -6.5576 26 6 3.5703 0.2492 -7.0824 27 6 3.5596 1.4289 -6.4364 28 8 2.5443 1.4221 -5.5572 29 1 -0.3633 -1.0223 -0.1050 30 1 -0.3633 0.4203 0.9378 31 1 -0.3633 0.6020 -0.8329 32 1 1.6101 -1.7285 1.2996 33 1 1.7638 -0.1652 2.1439 34 1 5.2366 -1.2618 -0.0795 35 1 3.9163 -2.4568 -0.1768 36 1 3.8824 0.3943 -1.2714 37 1 3.9209 -1.1084 -2.2249 38 1 1.5550 -2.6426 -4.5038 39 1 2.1006 -2.5321 -2.8132 40 1 -1.3150 -5.7429 -2.4399 41 1 0.0909 -0.8516 -5.3603 42 1 0.1291 0.7277 -4.5402 43 1 2.2222 -1.5156 -6.8515 44 1 4.2613 -0.0555 -7.8545 45 1 4.2475 2.2451 -6.6004 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270848679.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:17 Heat of formation + Delta-G solvation = -86.457342 kcal Electronic energy + Delta-G solvation = -28294.325666 eV Core-core repulsion = 24470.512301 eV Total energy + Delta-G solvation = -3823.813365 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.44835 -41.66171 -40.33087 -37.60750 -36.87410 -34.61454 -33.86778 -33.55486 -32.15506 -30.32444 -29.61339 -28.08599 -26.69888 -24.58112 -23.70486 -22.58419 -22.44137 -21.42369 -20.38124 -19.78508 -19.06595 -18.24437 -18.00256 -17.45584 -16.83431 -16.62682 -16.41105 -16.19962 -16.02263 -15.70458 -15.51563 -15.09111 -14.72837 -14.44461 -14.20247 -13.96971 -13.68899 -13.62508 -13.56502 -13.43797 -13.28505 -13.14383 -13.05773 -12.93631 -12.57035 -12.49237 -12.40123 -12.03465 -11.94892 -11.79416 -11.67847 -11.46268 -10.84172 -10.75261 -10.60291 -10.44239 -9.60193 -9.37985 -8.23765 -6.31380 0.74777 0.89854 1.43559 1.47428 1.54932 1.65572 1.70988 2.17715 2.38837 2.42143 3.10248 3.10760 3.49933 3.60931 3.65129 3.85089 3.94454 4.07903 4.18198 4.21872 4.25217 4.31564 4.38630 4.41113 4.54493 4.57331 4.67965 4.69165 4.73962 4.83508 4.86921 4.88439 4.94842 5.00629 5.04666 5.06608 5.18758 5.21363 5.26433 5.39822 5.48000 5.60764 5.66558 6.21658 6.28238 6.44111 6.59634 6.76235 7.25463 7.37161 8.91792 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.008335 B = 0.006530 C = 0.004573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3358.475028 B = 4287.042619 C = 6120.804093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.056 4.056 3 H 0.073 0.927 4 C -0.160 4.160 5 C 0.371 3.629 6 O -0.495 6.495 7 C -0.161 4.161 8 C -0.094 4.094 9 C -0.112 4.112 10 H 0.109 0.891 11 C 0.528 3.472 12 O -0.581 6.581 13 N -0.592 5.592 14 C 0.217 3.783 15 C -0.536 4.536 16 H 0.035 0.965 17 C 0.026 3.974 18 N -0.939 5.939 19 Si 0.927 3.073 20 H -0.256 1.256 21 H -0.292 1.292 22 H -0.238 1.238 23 C 0.194 3.806 24 C -0.043 4.043 25 C -0.203 4.203 26 C -0.221 4.221 27 C -0.045 4.045 28 O -0.192 6.192 29 H 0.051 0.949 30 H 0.074 0.926 31 H 0.038 0.962 32 H 0.116 0.884 33 H 0.099 0.901 34 H 0.106 0.894 35 H 0.121 0.879 36 H 0.067 0.933 37 H 0.085 0.915 38 H 0.045 0.955 39 H 0.052 0.948 40 H 0.267 0.733 41 H 0.118 0.882 42 H 0.077 0.923 43 H 0.155 0.845 44 H 0.173 0.827 45 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.443 5.614 -3.195 13.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.075 4.075 3 H 0.091 0.909 4 C -0.198 4.198 5 C 0.249 3.751 6 O -0.371 6.371 7 C -0.199 4.199 8 C -0.132 4.132 9 C -0.133 4.133 10 H 0.127 0.873 11 C 0.317 3.683 12 O -0.462 6.462 13 N -0.321 5.321 14 C 0.095 3.905 15 C -0.575 4.575 16 H 0.054 0.946 17 C -0.173 4.173 18 N -0.579 5.579 19 Si 0.750 3.250 20 H -0.180 1.180 21 H -0.218 1.218 22 H -0.161 1.161 23 C 0.070 3.930 24 C -0.094 4.094 25 C -0.223 4.223 26 C -0.240 4.240 27 C -0.113 4.113 28 O -0.089 6.089 29 H 0.070 0.930 30 H 0.093 0.907 31 H 0.058 0.942 32 H 0.134 0.866 33 H 0.118 0.882 34 H 0.124 0.876 35 H 0.139 0.861 36 H 0.086 0.914 37 H 0.104 0.896 38 H 0.063 0.937 39 H 0.070 0.930 40 H 0.076 0.924 41 H 0.136 0.864 42 H 0.096 0.904 43 H 0.173 0.827 44 H 0.191 0.809 45 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 11.516 6.481 -2.498 13.449 hybrid contribution -0.270 -0.886 -0.460 1.034 sum 11.246 5.595 -2.958 12.905 Atomic orbital electron populations 1.21784 0.94524 1.01811 1.01958 1.20866 0.96227 0.98954 0.91451 0.90856 1.22478 0.93544 1.04391 0.99350 1.25179 0.91892 0.71202 0.86817 1.90379 1.66069 1.39639 1.41047 1.22319 1.02444 1.02835 0.92294 1.21350 0.91520 1.01465 0.98825 1.21568 0.97044 1.02518 0.92192 0.87312 1.20795 0.76626 0.86324 0.84521 1.90600 1.55623 1.16466 1.83519 1.48028 1.64961 1.08357 1.10782 1.19727 0.96354 0.75800 0.98576 1.21455 0.98067 0.92130 1.45812 0.94647 1.25660 0.98312 0.99276 0.94047 1.70041 1.27602 1.12303 1.47905 0.86011 0.80054 0.78294 0.80605 1.18009 1.21808 1.16127 1.19660 0.90124 0.98599 0.84576 1.22982 0.99612 0.85155 1.01655 1.21908 0.98809 1.01885 0.99665 1.22138 1.01846 0.94859 1.05117 1.24844 0.92229 1.01842 0.92354 1.84097 1.37466 1.35476 1.51816 0.92982 0.90696 0.94246 0.86607 0.88237 0.87603 0.86094 0.91395 0.89625 0.93732 0.92997 0.92398 0.86435 0.90432 0.82704 0.80906 0.74868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.59 8.75 71.98 0.63 -3.96 16 2 C -0.06 -1.64 1.95 -10.58 -0.02 -1.66 16 3 H 0.07 2.26 7.97 -2.39 -0.02 2.24 16 4 C -0.16 -3.94 5.48 30.25 0.17 -3.77 16 5 C 0.37 9.59 6.71 29.46 0.20 9.79 16 6 O -0.50 -15.65 17.89 -1.45 -0.03 -15.68 16 7 C -0.16 -3.51 6.17 30.11 0.19 -3.32 16 8 C -0.09 -2.40 5.13 30.66 0.16 -2.24 16 9 C -0.11 -3.52 1.23 -11.57 -0.01 -3.53 16 10 H 0.11 3.61 6.00 -2.39 -0.01 3.59 16 11 C 0.53 19.91 5.70 87.66 0.50 20.41 16 12 O -0.58 -24.73 15.02 -3.03 -0.05 -24.78 16 13 N -0.59 -22.33 2.45 -830.51 -2.03 -24.36 16 14 C 0.22 8.44 3.84 85.63 0.33 8.77 16 15 C -0.54 -26.07 9.70 25.60 0.25 -25.82 16 16 H 0.04 2.01 8.06 -2.91 -0.02 1.98 16 17 C 0.03 1.32 5.47 84.65 0.46 1.79 16 18 N -0.94 -52.47 13.96 21.45 0.30 -52.17 16 19 Si 0.93 36.54 27.47 68.60 1.88 38.42 16 20 H -0.26 -9.40 7.11 99.48 0.71 -8.69 16 21 H -0.29 -11.93 7.11 99.48 0.71 -11.23 16 22 H -0.24 -8.37 6.54 99.48 0.65 -7.72 16 23 C 0.19 6.81 5.95 85.63 0.51 7.32 16 24 C -0.04 -1.39 6.88 24.83 0.17 -1.22 16 25 C -0.20 -5.68 10.81 22.19 0.24 -5.44 16 26 C -0.22 -5.08 10.91 22.19 0.24 -4.84 16 27 C -0.05 -1.06 12.09 66.97 0.81 -0.25 16 28 O -0.19 -6.22 10.65 -2.56 -0.03 -6.25 16 29 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.04 1.45 6.69 -2.38 -0.02 1.43 16 32 H 0.12 2.64 8.14 -2.38 -0.02 2.62 16 33 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 34 H 0.11 2.02 8.14 -2.38 -0.02 2.00 16 35 H 0.12 2.28 8.14 -2.39 -0.02 2.26 16 36 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.09 2.09 8.08 -2.39 -0.02 2.07 16 38 H 0.04 1.68 7.13 -2.39 -0.02 1.66 16 39 H 0.05 1.85 5.54 -2.39 -0.01 1.84 16 40 H 0.27 14.06 8.31 -92.71 -0.77 13.29 16 41 H 0.12 3.90 8.05 -2.39 -0.02 3.89 16 42 H 0.08 2.88 7.45 -2.38 -0.02 2.87 16 43 H 0.16 3.99 8.06 -2.91 -0.02 3.96 16 44 H 0.17 2.86 8.06 -2.91 -0.02 2.83 16 45 H 0.24 3.27 8.06 -2.91 -0.02 3.25 16 Total: -1.00 -66.63 369.40 5.79 -60.83 By element: Atomic # 1 Polarization: 31.02 SS G_CDS: 0.93 Total: 31.95 kcal Atomic # 6 Polarization: -12.79 SS G_CDS: 4.81 Total: -7.98 kcal Atomic # 7 Polarization: -74.80 SS G_CDS: -1.73 Total: -76.53 kcal Atomic # 8 Polarization: -46.60 SS G_CDS: -0.10 Total: -46.70 kcal Atomic # 14 Polarization: 36.54 SS G_CDS: 1.88 Total: 38.42 kcal Total: -66.63 5.79 -60.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270848679.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.626 kcal (2) G-P(sol) polarization free energy of solvation -66.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds