Wall clock time and date at job start Tue Mar 31 2020 13:28:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.48852 * 2 1 4 4 C 1.53091 * 109.48029 * 120.02550 * 2 1 3 5 5 C 1.53174 * 109.16250 * 177.59150 * 4 2 1 6 6 H 1.09002 * 109.54032 * 183.06645 * 5 4 2 7 7 N 1.46500 * 109.54383 * 62.89048 * 5 4 2 8 8 C 1.34772 * 120.00281 * 155.00343 * 7 5 4 9 9 O 1.21286 * 119.99900 * 359.97438 * 8 7 5 10 10 C 1.50701 * 120.00315 * 180.02562 * 8 7 5 11 11 C 1.50698 * 109.47273 * 179.97438 * 10 8 7 12 12 C 1.38322 * 119.96589 * 89.99907 * 11 10 8 13 13 C 1.38280 * 120.13917 * 180.02562 * 12 11 10 14 14 C 1.38121 * 120.06758 * 359.97438 * 13 12 11 15 15 C 1.38856 * 119.93157 * 0.02563 * 14 13 12 16 16 O 1.35753 * 120.07021 * 179.97438 * 15 14 13 17 17 C 1.34830 * 116.99804 * 354.46279 * 16 15 14 18 18 H 1.08003 * 120.00020 * 5.05653 * 17 16 15 19 19 C 1.38651 * 120.00146 * 185.05602 * 17 16 15 20 20 N 1.31563 * 119.99890 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 120.00305 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47128 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47538 * 120.00079 * 21 19 17 24 24 H 1.48503 * 109.47061 * 239.99869 * 21 19 17 25 25 C 1.38072 * 119.96543 * 269.72703 * 11 10 8 26 26 C 1.53178 * 109.03643 * 303.02120 * 5 4 2 27 27 C 1.53088 * 109.16239 * 56.97882 * 26 5 4 28 28 O 1.42897 * 109.41723 * 302.39017 * 27 26 5 29 29 H 1.08997 * 109.47608 * 299.97267 * 1 2 3 30 30 H 1.08999 * 109.47250 * 59.97385 * 1 2 3 31 31 H 1.09007 * 109.47138 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.52131 * 57.68526 * 4 2 1 33 33 H 1.08998 * 109.52590 * 297.50097 * 4 2 1 34 34 H 0.97004 * 119.99563 * 334.71797 * 7 5 4 35 35 H 1.09002 * 109.46810 * 299.99614 * 10 8 7 36 36 H 1.09004 * 109.47142 * 59.99064 * 10 8 7 37 37 H 1.08000 * 119.93064 * 359.97148 * 12 11 10 38 38 H 1.08000 * 119.96279 * 180.02562 * 13 12 11 39 39 H 1.07995 * 120.03180 * 180.02562 * 14 13 12 40 40 H 0.96995 * 119.99858 * 180.02562 * 20 19 17 41 41 H 1.08004 * 120.03164 * 359.97438 * 25 11 10 42 42 H 1.08999 * 109.52405 * 176.88624 * 26 5 4 43 43 H 1.09000 * 109.52141 * 297.07480 * 26 5 4 44 44 H 1.09002 * 109.47840 * 182.40756 * 27 26 5 45 45 H 1.09005 * 109.48035 * 62.37485 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0275 0.0000 4 6 2.0405 -0.7222 1.2496 5 6 3.5710 -0.7708 1.2122 6 1 3.9391 -1.3313 2.0716 7 7 4.1058 0.5926 1.2507 8 6 5.3477 0.8163 1.7238 9 8 6.0226 -0.1111 2.1182 10 6 5.8976 2.2188 1.7640 11 6 7.2932 2.1952 2.3321 12 6 8.3794 2.0409 1.4898 13 6 9.6616 2.0182 2.0073 14 6 9.8612 2.1502 3.3676 15 6 8.7728 2.3052 4.2158 16 8 8.9658 2.4346 5.5533 17 6 10.2273 2.2896 6.0066 18 1 11.0408 2.1617 5.3078 19 6 10.4802 2.3048 7.3697 20 7 9.4893 2.4611 8.2209 21 14 12.2280 2.1046 7.9977 22 1 13.1526 1.9467 6.8464 23 1 12.6131 3.3057 8.7813 24 1 12.3078 0.9015 8.8647 25 6 7.4865 2.3332 3.6922 26 6 4.0176 -1.4600 -0.0809 27 6 3.4306 -0.7093 -1.2790 28 8 2.0065 -0.6742 -1.1664 29 1 -0.3634 0.5134 0.8902 30 1 -0.3634 0.5142 -0.8897 31 1 -0.3634 -1.0277 -0.0005 32 1 1.6442 -1.7374 1.2710 33 1 1.7148 -0.1843 2.1399 34 1 3.5674 1.3338 0.9318 35 1 5.9229 2.6282 0.7541 36 1 5.2602 2.8411 2.3924 37 1 8.2259 1.9371 0.4258 38 1 10.5077 1.8980 1.3469 39 1 10.8628 2.1328 3.7711 40 1 9.6663 2.4721 9.1745 41 1 6.6382 2.4585 4.3488 42 1 5.1058 -1.4498 -0.1421 43 1 3.6612 -2.4901 -0.0863 44 1 3.7099 -1.2204 -2.2004 45 1 3.8192 0.3090 -1.2958 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271320867.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:00 Heat of formation + Delta-G solvation = -94.952479 kcal Electronic energy + Delta-G solvation = -26354.922913 eV Core-core repulsion = 22530.741172 eV Total energy + Delta-G solvation = -3824.181742 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.60060 -39.28438 -38.54685 -36.47381 -35.16003 -33.15542 -32.50938 -32.15963 -31.27406 -29.15685 -28.12979 -26.94473 -25.21682 -24.45027 -22.66626 -21.90844 -21.48828 -20.40183 -19.63295 -17.67599 -17.21369 -16.86772 -16.65320 -16.24832 -16.10200 -15.49090 -15.00656 -14.81423 -14.44047 -14.36736 -14.05713 -13.75894 -13.60337 -13.34733 -13.08821 -12.96839 -12.69880 -12.58692 -12.42899 -12.30539 -12.19718 -11.82708 -11.52771 -11.49577 -11.25176 -11.23741 -10.82872 -10.73070 -10.65565 -10.57243 -10.39443 -9.79276 -9.72714 -9.28925 -9.14261 -8.79773 -8.02339 -7.17189 -6.40073 -3.98914 2.13164 2.43533 2.76707 3.12908 3.16159 3.18947 3.22398 3.41975 4.00547 4.29838 4.41359 4.52989 4.57247 4.69602 4.74298 4.91575 4.95500 5.05507 5.13377 5.20166 5.21949 5.26870 5.27691 5.35666 5.50326 5.52724 5.62562 5.68951 5.70930 5.75091 5.79127 5.80700 5.84179 5.97080 6.22030 6.37878 6.39058 6.70182 6.89646 6.96069 7.12026 7.30815 7.40670 7.43425 7.48818 7.87378 8.05329 8.31591 9.05965 9.77002 10.78428 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.025020 B = 0.002404 C = 0.002305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.851725 B =11643.624339 C =12145.737773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.085 3.915 3 H 0.056 0.944 4 C -0.158 4.158 5 C 0.143 3.857 6 H 0.094 0.906 7 N -0.736 5.736 8 C 0.514 3.486 9 O -0.515 6.515 10 C -0.094 4.094 11 C -0.033 4.033 12 C -0.197 4.197 13 C -0.075 4.075 14 C -0.231 4.231 15 C 0.155 3.845 16 O -0.180 6.180 17 C -0.390 4.390 18 H 0.092 0.908 19 C 0.038 3.962 20 N -0.865 5.865 21 Si 0.941 3.059 22 H -0.267 1.267 23 H -0.276 1.276 24 H -0.276 1.276 25 C -0.174 4.174 26 C -0.167 4.167 27 C 0.064 3.936 28 O -0.380 6.380 29 H 0.072 0.928 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.395 0.605 35 H 0.097 0.903 36 H 0.099 0.901 37 H 0.102 0.898 38 H 0.107 0.893 39 H 0.126 0.874 40 H 0.268 0.732 41 H 0.113 0.887 42 H 0.081 0.919 43 H 0.079 0.921 44 H 0.093 0.907 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.429 -3.000 -17.608 23.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.027 3.973 3 H 0.074 0.926 4 C -0.196 4.196 5 C 0.038 3.962 6 H 0.112 0.888 7 N -0.391 5.391 8 C 0.301 3.699 9 O -0.389 6.389 10 C -0.134 4.134 11 C -0.033 4.033 12 C -0.216 4.216 13 C -0.093 4.093 14 C -0.250 4.250 15 C 0.101 3.899 16 O -0.084 6.084 17 C -0.466 4.466 18 H 0.109 0.891 19 C -0.166 4.166 20 N -0.500 5.500 21 Si 0.766 3.234 22 H -0.191 1.191 23 H -0.202 1.202 24 H -0.202 1.202 25 C -0.194 4.194 26 C -0.206 4.206 27 C -0.013 4.013 28 O -0.299 6.299 29 H 0.091 0.909 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.105 0.895 33 H 0.100 0.900 34 H 0.230 0.770 35 H 0.115 0.885 36 H 0.117 0.883 37 H 0.120 0.880 38 H 0.125 0.875 39 H 0.144 0.856 40 H 0.078 0.922 41 H 0.131 0.869 42 H 0.100 0.900 43 H 0.098 0.902 44 H 0.112 0.888 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -15.222 -3.710 -16.984 23.107 hybrid contribution 0.917 0.284 0.364 1.026 sum -14.306 -3.426 -16.620 22.195 Atomic orbital electron populations 1.21773 0.92844 1.03088 1.02562 1.22066 0.95253 0.94796 0.85151 0.92630 1.22527 0.94784 1.03190 0.99088 1.20914 0.92685 0.83785 0.98789 0.88799 1.46198 1.16947 1.09112 1.66863 1.20785 0.80833 0.91726 0.76555 1.90766 1.57769 1.45138 1.45210 1.20598 0.95748 0.93966 1.03098 1.18644 0.92318 0.99628 0.92744 1.20335 0.92434 1.10843 0.97952 1.20676 0.96128 0.97958 0.94533 1.21175 0.99383 1.10941 0.93526 1.19273 0.93031 0.92362 0.85190 1.83975 1.31063 1.77338 1.16031 1.21365 0.82049 1.51556 0.91626 0.89076 1.25279 0.99814 0.96724 0.94783 1.70053 1.31202 1.46178 1.02587 0.85651 0.80425 0.78229 0.79136 1.19126 1.20193 1.20181 1.19936 0.94911 1.10597 0.93910 1.22567 1.02415 1.00344 0.95253 1.22533 0.80567 0.99838 0.98351 1.87937 1.21241 1.77947 1.42812 0.90946 0.91772 0.91697 0.89486 0.90001 0.77031 0.88488 0.88289 0.88010 0.87503 0.85624 0.92167 0.86874 0.90031 0.90227 0.88847 0.93105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.56 37.16 0.36 -0.49 16 2 C 0.09 0.61 3.09 -26.68 -0.08 0.53 16 3 H 0.06 0.35 6.71 -51.93 -0.35 0.00 16 4 C -0.16 -1.17 5.08 -26.59 -0.13 -1.31 16 5 C 0.14 1.41 2.82 -67.75 -0.19 1.22 16 6 H 0.09 1.14 7.58 -51.93 -0.39 0.75 16 7 N -0.74 -7.33 4.40 -53.63 -0.24 -7.57 16 8 C 0.51 7.25 7.79 -10.99 -0.09 7.16 16 9 O -0.52 -9.88 15.70 5.55 0.09 -9.79 16 10 C -0.09 -1.23 5.83 -29.03 -0.17 -1.40 16 11 C -0.03 -0.60 4.37 -104.65 -0.46 -1.06 16 12 C -0.20 -3.57 9.70 -39.54 -0.38 -3.95 16 13 C -0.07 -1.45 10.04 -39.61 -0.40 -1.85 16 14 C -0.23 -5.27 9.17 -39.40 -0.36 -5.63 16 15 C 0.15 3.91 6.65 -39.11 -0.26 3.65 16 16 O -0.18 -5.31 9.76 0.04 0.00 -5.31 16 17 C -0.39 -11.21 9.49 30.89 0.29 -10.92 16 18 H 0.09 2.44 5.20 -52.48 -0.27 2.17 16 19 C 0.04 1.06 5.49 -17.51 -0.10 0.97 16 20 N -0.86 -25.92 13.67 55.48 0.76 -25.16 16 21 Si 0.94 21.04 29.55 -169.99 -5.02 16.02 16 22 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 23 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 24 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 25 C -0.17 -3.84 9.64 -39.40 -0.38 -4.22 16 26 C -0.17 -1.57 5.80 -26.59 -0.15 -1.73 16 27 C 0.06 0.53 6.68 37.20 0.25 0.78 16 28 O -0.38 -3.47 10.41 -35.23 -0.37 -3.84 16 29 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.40 2.83 7.07 -40.82 -0.29 2.54 16 35 H 0.10 0.97 8.09 -51.93 -0.42 0.55 16 36 H 0.10 1.10 8.08 -51.93 -0.42 0.68 16 37 H 0.10 1.56 8.06 -52.49 -0.42 1.13 16 38 H 0.11 1.75 8.06 -52.49 -0.42 1.32 16 39 H 0.13 2.85 5.64 -52.49 -0.30 2.56 16 40 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 41 H 0.11 2.42 8.06 -52.48 -0.42 2.00 16 42 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 45 H 0.05 0.41 7.75 -51.93 -0.40 0.00 16 LS Contribution 369.74 15.07 5.57 5.57 Total: -1.00 -34.94 369.74 -8.09 -43.03 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: -6.63 Total: 5.32 kcal Atomic # 6 Polarization: -16.00 SS G_CDS: -2.26 Total: -18.26 kcal Atomic # 7 Polarization: -33.26 SS G_CDS: 0.52 Total: -32.73 kcal Atomic # 8 Polarization: -18.67 SS G_CDS: -0.28 Total: -18.95 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.94 -8.09 -43.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271320867.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.919 kcal (2) G-P(sol) polarization free energy of solvation -34.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds