Wall clock time and date at job start Tue Mar 31 2020 13:28:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.48041 * 2 1 4 4 C 1.53094 * 109.48181 * 239.97283 * 2 1 3 5 5 C 1.53182 * 109.16021 * 182.40891 * 4 2 1 6 6 H 1.08998 * 109.54172 * 176.93828 * 5 4 2 7 7 N 1.46497 * 109.54544 * 297.11653 * 5 4 2 8 8 C 1.34773 * 119.99908 * 204.82503 * 7 5 4 9 9 O 1.21273 * 120.00229 * 0.02562 * 8 7 5 10 10 C 1.50709 * 119.99904 * 179.97438 * 8 7 5 11 11 C 1.50694 * 109.46884 * 179.97438 * 10 8 7 12 12 C 1.38328 * 119.96671 * 90.00752 * 11 10 8 13 13 C 1.38275 * 120.13894 * 179.97438 * 12 11 10 14 14 C 1.38123 * 120.07124 * 359.97438 * 13 12 11 15 15 C 1.38850 * 119.92831 * 0.02562 * 14 13 12 16 16 O 1.35757 * 120.06949 * 180.02562 * 15 14 13 17 17 C 1.34827 * 116.99402 * 354.46138 * 16 15 14 18 18 H 1.07999 * 120.00732 * 5.06104 * 17 16 15 19 19 C 1.38663 * 119.99567 * 185.05739 * 17 16 15 20 20 N 1.31553 * 119.99986 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 119.99901 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47383 * 59.99646 * 21 19 17 23 23 H 1.48496 * 109.47084 * 180.02562 * 21 19 17 24 24 H 1.48508 * 109.46577 * 299.99615 * 21 19 17 25 25 C 1.38084 * 119.96745 * 270.00131 * 11 10 8 26 26 C 1.53178 * 109.10772 * 57.02771 * 5 4 2 27 27 C 1.53279 * 109.06439 * 303.05553 * 26 5 4 28 28 O 1.42903 * 109.46037 * 57.55629 * 27 26 5 29 29 H 1.09004 * 109.47053 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47496 * 300.02337 * 1 2 3 31 31 H 1.09005 * 109.46602 * 60.02559 * 1 2 3 32 32 H 1.09002 * 109.51785 * 62.50739 * 4 2 1 33 33 H 1.09000 * 109.57403 * 302.34876 * 4 2 1 34 34 H 0.97002 * 119.99924 * 24.82116 * 7 5 4 35 35 H 1.08998 * 109.46778 * 60.00250 * 10 8 7 36 36 H 1.08992 * 109.47514 * 300.00333 * 10 8 7 37 37 H 1.08000 * 119.92761 * 0.26756 * 12 11 10 38 38 H 1.08002 * 119.96519 * 180.02562 * 13 12 11 39 39 H 1.07999 * 120.03278 * 180.02562 * 14 13 12 40 40 H 0.97002 * 120.00283 * 179.97438 * 20 19 17 41 41 H 1.08000 * 120.03482 * 0.02837 * 25 11 10 42 42 H 1.08996 * 109.52102 * 62.88247 * 26 5 4 43 43 H 1.09004 * 109.51964 * 183.06861 * 26 5 4 44 44 H 1.08999 * 109.46100 * 297.55995 * 27 26 5 45 45 H 1.09000 * 109.46527 * 177.55794 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0406 -0.7222 -1.2496 5 6 3.5712 -0.7708 -1.2121 6 1 3.9394 -1.3312 -2.0714 7 7 4.1059 0.5926 -1.2504 8 6 5.3492 0.8158 -1.7203 9 8 6.0252 -0.1119 -2.1117 10 6 5.8991 2.2184 -1.7603 11 6 7.2967 2.1941 -2.3232 12 6 7.4952 2.3251 -3.6859 13 6 8.7761 2.3038 -4.2061 14 6 9.8619 2.1521 -3.3660 15 6 9.6661 2.0205 -1.9977 16 8 10.7312 1.8718 -1.1693 17 6 11.9428 1.7449 -1.7471 18 1 12.0440 1.8457 -2.8176 19 6 13.0591 1.4848 -0.9667 20 7 12.9361 1.3625 0.3373 21 14 14.7380 1.3097 -1.7670 22 1 15.0816 2.5678 -2.4769 23 1 15.7578 1.0353 -0.7230 24 1 14.7088 0.1858 -2.7373 25 6 8.3781 2.0413 -1.4782 26 6 4.0195 -1.4609 0.0799 27 6 3.4307 -0.7094 1.2791 28 8 2.0065 -0.6743 1.1664 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5142 0.8897 31 1 -0.3633 0.5135 -0.8903 32 1 1.7149 -0.1841 -2.1398 33 1 1.6443 -1.7374 -1.2722 34 1 3.5651 1.3346 -0.9377 35 1 5.9214 2.6288 -0.7507 36 1 5.2637 2.8400 -2.3911 37 1 6.6481 2.4489 -4.3443 38 1 8.9278 2.4067 -5.2705 39 1 10.8622 2.1360 -3.7730 40 1 13.7169 1.1803 0.8833 41 1 8.2225 1.9387 -0.4143 42 1 3.6632 -2.4909 0.0852 43 1 5.1078 -1.4506 0.1396 44 1 3.8192 0.3089 1.2960 45 1 3.7099 -1.2203 2.2006 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271320871.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:06 Heat of formation + Delta-G solvation = -94.768150 kcal Electronic energy + Delta-G solvation = -26412.548192 eV Core-core repulsion = 22588.374443 eV Total energy + Delta-G solvation = -3824.173748 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.58007 -39.27284 -38.53917 -36.46982 -35.14693 -33.12896 -32.50432 -32.15489 -31.25786 -29.15115 -28.10821 -26.94283 -25.21111 -24.41984 -22.64868 -21.89829 -21.48807 -20.39679 -19.61677 -17.67134 -17.20203 -16.87450 -16.62095 -16.21104 -16.08165 -15.48215 -15.01741 -14.74622 -14.49967 -14.35928 -13.99431 -13.82223 -13.52543 -13.31877 -13.15534 -12.92894 -12.72634 -12.52419 -12.43334 -12.30592 -12.16861 -11.81662 -11.52036 -11.47662 -11.23262 -11.21360 -10.81130 -10.74068 -10.61940 -10.58304 -10.42215 -9.76352 -9.72331 -9.29491 -9.13288 -8.78746 -8.02172 -7.17101 -6.39531 -3.98535 2.13268 2.43870 2.76978 3.14198 3.16133 3.19584 3.20648 3.45645 4.00972 4.30502 4.41541 4.55376 4.57457 4.72459 4.77647 4.92492 4.98868 5.05727 5.15880 5.21181 5.21297 5.27501 5.29147 5.37619 5.50597 5.56192 5.62794 5.69418 5.72446 5.76861 5.78905 5.81870 5.90991 5.97281 6.22041 6.37956 6.39633 6.70350 6.93863 6.96212 7.11677 7.30850 7.40736 7.43605 7.48898 7.87529 8.05491 8.31813 9.06193 9.77134 10.78769 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.021649 B = 0.002541 C = 0.002369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.023221 B =11015.994217 C =11817.459712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.085 3.915 3 H 0.056 0.944 4 C -0.157 4.157 5 C 0.144 3.856 6 H 0.092 0.908 7 N -0.737 5.737 8 C 0.514 3.486 9 O -0.515 6.515 10 C -0.094 4.094 11 C -0.033 4.033 12 C -0.197 4.197 13 C -0.075 4.075 14 C -0.231 4.231 15 C 0.154 3.846 16 O -0.180 6.180 17 C -0.391 4.391 18 H 0.091 0.909 19 C 0.039 3.961 20 N -0.865 5.865 21 Si 0.940 3.060 22 H -0.270 1.270 23 H -0.278 1.278 24 H -0.270 1.270 25 C -0.174 4.174 26 C -0.168 4.168 27 C 0.063 3.937 28 O -0.380 6.380 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.395 0.605 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.102 0.898 38 H 0.107 0.893 39 H 0.126 0.874 40 H 0.270 0.730 41 H 0.113 0.887 42 H 0.079 0.921 43 H 0.083 0.917 44 H 0.052 0.948 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.295 -0.485 -2.018 23.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.027 3.973 3 H 0.073 0.927 4 C -0.195 4.195 5 C 0.039 3.961 6 H 0.111 0.889 7 N -0.391 5.391 8 C 0.301 3.699 9 O -0.389 6.389 10 C -0.134 4.134 11 C -0.034 4.034 12 C -0.216 4.216 13 C -0.093 4.093 14 C -0.250 4.250 15 C 0.101 3.899 16 O -0.083 6.083 17 C -0.467 4.467 18 H 0.108 0.892 19 C -0.165 4.165 20 N -0.500 5.500 21 Si 0.765 3.235 22 H -0.195 1.195 23 H -0.203 1.203 24 H -0.195 1.195 25 C -0.193 4.193 26 C -0.207 4.207 27 C -0.014 4.014 28 O -0.299 6.299 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.098 0.902 33 H 0.105 0.895 34 H 0.230 0.770 35 H 0.117 0.883 36 H 0.116 0.884 37 H 0.120 0.880 38 H 0.125 0.875 39 H 0.144 0.856 40 H 0.079 0.921 41 H 0.131 0.869 42 H 0.098 0.902 43 H 0.102 0.898 44 H 0.070 0.930 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -22.720 -1.313 -1.726 22.823 hybrid contribution 0.860 0.309 -0.520 1.052 sum -21.859 -1.004 -2.245 21.997 Atomic orbital electron populations 1.21772 0.92904 1.03060 1.02510 1.22059 0.95204 0.94822 0.85231 0.92651 1.22520 0.94804 1.03140 0.99023 1.20908 0.92591 0.83752 0.98849 0.88946 1.46202 1.16747 1.09071 1.67117 1.20783 0.80775 0.91737 0.76609 1.90762 1.57570 1.45096 1.45451 1.20598 0.95507 0.93897 1.03408 1.18650 0.91701 0.99644 0.93359 1.20337 0.96330 1.11022 0.93869 1.20676 0.92426 0.97978 0.98224 1.21171 0.99478 1.10852 0.93524 1.19270 0.88519 0.92549 0.89553 1.83975 1.13238 1.78410 1.32721 1.21267 0.81468 1.50560 0.93430 0.89189 1.25272 0.99277 0.96516 0.95459 1.70029 1.30891 1.45068 1.04039 0.85796 0.80071 0.79130 0.78507 1.19537 1.20314 1.19530 1.19932 0.89795 1.10395 0.99211 1.22609 1.02655 1.00268 0.95164 1.22582 0.80343 0.99977 0.98457 1.87941 1.21379 1.77892 1.42692 0.91711 0.91744 0.91045 0.90173 0.89512 0.77029 0.88344 0.88443 0.87998 0.87503 0.85634 0.92057 0.86894 0.90240 0.89799 0.92991 0.88688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.56 37.16 0.36 -0.49 16 2 C 0.08 0.62 3.09 -26.68 -0.08 0.54 16 3 H 0.06 0.36 6.71 -51.93 -0.35 0.01 16 4 C -0.16 -1.13 5.08 -26.59 -0.13 -1.26 16 5 C 0.14 1.42 2.81 -67.75 -0.19 1.23 16 6 H 0.09 1.09 7.58 -51.93 -0.39 0.69 16 7 N -0.74 -7.34 4.40 -53.63 -0.24 -7.58 16 8 C 0.51 7.25 7.79 -10.98 -0.09 7.16 16 9 O -0.52 -9.88 15.70 5.56 0.09 -9.79 16 10 C -0.09 -1.23 5.83 -29.03 -0.17 -1.40 16 11 C -0.03 -0.60 4.37 -104.65 -0.46 -1.06 16 12 C -0.20 -3.58 9.70 -39.53 -0.38 -3.96 16 13 C -0.07 -1.45 10.04 -39.61 -0.40 -1.85 16 14 C -0.23 -5.27 9.17 -39.40 -0.36 -5.63 16 15 C 0.15 3.90 6.65 -39.11 -0.26 3.64 16 16 O -0.18 -5.29 9.76 0.04 0.00 -5.29 16 17 C -0.39 -11.24 9.49 30.89 0.29 -10.95 16 18 H 0.09 2.40 5.20 -52.49 -0.27 2.12 16 19 C 0.04 1.09 5.49 -17.51 -0.10 0.99 16 20 N -0.87 -25.92 13.67 55.48 0.76 -25.16 16 21 Si 0.94 21.02 29.55 -169.99 -5.02 15.99 16 22 H -0.27 -5.82 7.11 56.52 0.40 -5.41 16 23 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 24 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 25 C -0.17 -3.84 9.65 -39.39 -0.38 -4.22 16 26 C -0.17 -1.73 5.82 -26.49 -0.15 -1.88 16 27 C 0.06 0.59 6.68 37.30 0.25 0.84 16 28 O -0.38 -3.69 10.41 -35.23 -0.37 -4.06 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.40 2.84 7.07 -40.82 -0.29 2.55 16 35 H 0.10 1.10 8.08 -51.93 -0.42 0.68 16 36 H 0.10 0.97 8.09 -51.93 -0.42 0.55 16 37 H 0.10 1.56 8.06 -52.49 -0.42 1.14 16 38 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 39 H 0.13 2.84 5.64 -52.49 -0.30 2.55 16 40 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 41 H 0.11 2.41 8.06 -52.49 -0.42 1.99 16 42 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 43 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 44 H 0.05 0.48 7.75 -51.93 -0.40 0.08 16 45 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 369.76 15.07 5.57 5.57 Total: -1.00 -34.89 369.76 -8.09 -42.98 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -6.63 Total: 5.64 kcal Atomic # 6 Polarization: -16.05 SS G_CDS: -2.25 Total: -18.31 kcal Atomic # 7 Polarization: -33.26 SS G_CDS: 0.52 Total: -32.74 kcal Atomic # 8 Polarization: -18.86 SS G_CDS: -0.28 Total: -19.14 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.89 -8.09 -42.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271320871.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.792 kcal (2) G-P(sol) polarization free energy of solvation -34.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds