Wall clock time and date at job start Tue Mar 31 2020 13:28:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.48041 * 2 1 4 4 C 1.53094 * 109.48181 * 239.97283 * 2 1 3 5 5 C 1.53182 * 109.16021 * 182.40891 * 4 2 1 6 6 H 1.08998 * 109.54172 * 176.93828 * 5 4 2 7 7 N 1.46497 * 109.54544 * 297.11653 * 5 4 2 8 8 C 1.34773 * 119.99908 * 204.82503 * 7 5 4 9 9 O 1.21273 * 120.00229 * 0.02562 * 8 7 5 10 10 C 1.50709 * 119.99904 * 179.97438 * 8 7 5 11 11 C 1.50694 * 109.46884 * 179.97438 * 10 8 7 12 12 C 1.38328 * 119.96671 * 90.00752 * 11 10 8 13 13 C 1.38275 * 120.13894 * 179.97438 * 12 11 10 14 14 C 1.38123 * 120.07124 * 359.97438 * 13 12 11 15 15 C 1.38850 * 119.92831 * 0.02562 * 14 13 12 16 16 O 1.35757 * 120.06949 * 180.02562 * 15 14 13 17 17 C 1.34827 * 116.99402 * 354.46138 * 16 15 14 18 18 H 1.07999 * 120.00732 * 5.06104 * 17 16 15 19 19 C 1.38663 * 119.99567 * 185.05739 * 17 16 15 20 20 N 1.31553 * 119.99986 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 119.99901 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47383 * 59.99646 * 21 19 17 23 23 H 1.48496 * 109.47084 * 180.02562 * 21 19 17 24 24 H 1.48508 * 109.46577 * 299.99615 * 21 19 17 25 25 C 1.38084 * 119.96745 * 270.00131 * 11 10 8 26 26 C 1.53178 * 109.10772 * 57.02771 * 5 4 2 27 27 C 1.53279 * 109.06439 * 303.05553 * 26 5 4 28 28 O 1.42903 * 109.46037 * 57.55629 * 27 26 5 29 29 H 1.09004 * 109.47053 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47496 * 300.02337 * 1 2 3 31 31 H 1.09005 * 109.46602 * 60.02559 * 1 2 3 32 32 H 1.09002 * 109.51785 * 62.50739 * 4 2 1 33 33 H 1.09000 * 109.57403 * 302.34876 * 4 2 1 34 34 H 0.97002 * 119.99924 * 24.82116 * 7 5 4 35 35 H 1.08998 * 109.46778 * 60.00250 * 10 8 7 36 36 H 1.08992 * 109.47514 * 300.00333 * 10 8 7 37 37 H 1.08000 * 119.92761 * 0.26756 * 12 11 10 38 38 H 1.08002 * 119.96519 * 180.02562 * 13 12 11 39 39 H 1.07999 * 120.03278 * 180.02562 * 14 13 12 40 40 H 0.97002 * 120.00283 * 179.97438 * 20 19 17 41 41 H 1.08000 * 120.03482 * 0.02837 * 25 11 10 42 42 H 1.08996 * 109.52102 * 62.88247 * 26 5 4 43 43 H 1.09004 * 109.51964 * 183.06861 * 26 5 4 44 44 H 1.08999 * 109.46100 * 297.55995 * 27 26 5 45 45 H 1.09000 * 109.46527 * 177.55794 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0406 -0.7222 -1.2496 5 6 3.5712 -0.7708 -1.2121 6 1 3.9394 -1.3312 -2.0714 7 7 4.1059 0.5926 -1.2504 8 6 5.3492 0.8158 -1.7203 9 8 6.0252 -0.1119 -2.1117 10 6 5.8991 2.2184 -1.7603 11 6 7.2967 2.1941 -2.3232 12 6 7.4952 2.3251 -3.6859 13 6 8.7761 2.3038 -4.2061 14 6 9.8619 2.1521 -3.3660 15 6 9.6661 2.0205 -1.9977 16 8 10.7312 1.8718 -1.1693 17 6 11.9428 1.7449 -1.7471 18 1 12.0440 1.8457 -2.8176 19 6 13.0591 1.4848 -0.9667 20 7 12.9361 1.3625 0.3373 21 14 14.7380 1.3097 -1.7670 22 1 15.0816 2.5678 -2.4769 23 1 15.7578 1.0353 -0.7230 24 1 14.7088 0.1858 -2.7373 25 6 8.3781 2.0413 -1.4782 26 6 4.0195 -1.4609 0.0799 27 6 3.4307 -0.7094 1.2791 28 8 2.0065 -0.6743 1.1664 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5142 0.8897 31 1 -0.3633 0.5135 -0.8903 32 1 1.7149 -0.1841 -2.1398 33 1 1.6443 -1.7374 -1.2722 34 1 3.5651 1.3346 -0.9377 35 1 5.9214 2.6288 -0.7507 36 1 5.2637 2.8400 -2.3911 37 1 6.6481 2.4489 -4.3443 38 1 8.9278 2.4067 -5.2705 39 1 10.8622 2.1360 -3.7730 40 1 13.7169 1.1803 0.8833 41 1 8.2225 1.9387 -0.4143 42 1 3.6632 -2.4909 0.0852 43 1 5.1078 -1.4506 0.1396 44 1 3.8192 0.3089 1.2960 45 1 3.7099 -1.2203 2.2006 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271320871.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:05 Heat of formation + Delta-G solvation = -118.714260 kcal Electronic energy + Delta-G solvation = -26413.586573 eV Core-core repulsion = 22588.374443 eV Total energy + Delta-G solvation = -3825.212130 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.52261 -40.75476 -39.80372 -38.17878 -36.09650 -34.35218 -33.73625 -33.65035 -32.35976 -30.85698 -28.90136 -28.17935 -27.22708 -25.18998 -23.51319 -23.20669 -22.94154 -21.78179 -20.48899 -19.51323 -18.81574 -18.14597 -17.28497 -17.06576 -16.96368 -16.80394 -16.56910 -16.12382 -16.01872 -15.57344 -15.47020 -15.02629 -14.97135 -14.54688 -14.37762 -14.04161 -13.89470 -13.58739 -13.52650 -13.33611 -12.97768 -12.93973 -12.85789 -12.77618 -12.48528 -12.37465 -12.21911 -12.13182 -12.10176 -11.95713 -11.31119 -11.21798 -10.94733 -10.78804 -10.50203 -10.06442 -9.63682 -8.97848 -8.47580 -6.16127 0.51966 0.75890 1.32907 1.44462 1.49710 1.67442 2.15725 2.20155 2.81736 2.85028 3.17061 3.44839 3.64485 3.74842 3.81030 3.87483 3.96326 4.08638 4.11199 4.19879 4.28204 4.31831 4.43706 4.51295 4.58275 4.63565 4.65996 4.73146 4.73882 4.75779 4.86937 4.95607 5.03882 5.05575 5.08430 5.12420 5.17579 5.30821 5.35662 5.50223 5.65044 5.72748 5.75352 6.02243 6.23532 6.28075 6.55223 6.96909 7.30230 7.78629 8.75879 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.021649 B = 0.002541 C = 0.002369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.023221 B =11015.994217 C =11817.459712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.077 3.923 3 H 0.069 0.931 4 C -0.145 4.145 5 C 0.142 3.858 6 H 0.072 0.928 7 N -0.714 5.714 8 C 0.516 3.484 9 O -0.575 6.575 10 C -0.092 4.092 11 C -0.025 4.025 12 C -0.180 4.180 13 C -0.074 4.074 14 C -0.248 4.248 15 C 0.111 3.889 16 O -0.234 6.234 17 C -0.415 4.415 18 H 0.100 0.900 19 C -0.025 4.025 20 N -0.922 5.922 21 Si 1.019 2.981 22 H -0.255 1.255 23 H -0.270 1.270 24 H -0.260 1.260 25 C -0.192 4.192 26 C -0.167 4.167 27 C 0.067 3.933 28 O -0.393 6.393 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.092 0.908 32 H 0.100 0.900 33 H 0.089 0.911 34 H 0.414 0.586 35 H 0.120 0.880 36 H 0.145 0.855 37 H 0.148 0.852 38 H 0.145 0.855 39 H 0.117 0.883 40 H 0.273 0.727 41 H 0.105 0.895 42 H 0.083 0.917 43 H 0.053 0.947 44 H 0.054 0.946 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.305 0.697 -4.246 26.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.020 3.980 3 H 0.087 0.913 4 C -0.183 4.183 5 C 0.037 3.963 6 H 0.090 0.910 7 N -0.368 5.368 8 C 0.304 3.696 9 O -0.454 6.454 10 C -0.131 4.131 11 C -0.026 4.026 12 C -0.198 4.198 13 C -0.092 4.092 14 C -0.267 4.267 15 C 0.061 3.939 16 O -0.141 6.141 17 C -0.491 4.491 18 H 0.117 0.883 19 C -0.222 4.222 20 N -0.561 5.561 21 Si 0.838 3.162 22 H -0.179 1.179 23 H -0.194 1.194 24 H -0.184 1.184 25 C -0.212 4.212 26 C -0.206 4.206 27 C -0.010 4.010 28 O -0.313 6.313 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.110 0.890 32 H 0.118 0.882 33 H 0.108 0.892 34 H 0.251 0.749 35 H 0.138 0.862 36 H 0.163 0.837 37 H 0.166 0.834 38 H 0.163 0.837 39 H 0.135 0.865 40 H 0.082 0.918 41 H 0.123 0.877 42 H 0.102 0.898 43 H 0.071 0.929 44 H 0.073 0.927 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -25.833 -0.092 -3.966 26.136 hybrid contribution 1.420 -0.036 0.071 1.423 sum -24.413 -0.128 -3.895 24.722 Atomic orbital electron populations 1.21788 0.91573 1.03144 1.03488 1.22310 0.96259 0.95182 0.84254 0.91326 1.22470 0.92109 1.03822 0.99940 1.20938 0.94554 0.83187 0.97587 0.91010 1.45975 1.15557 1.09927 1.65341 1.20923 0.81353 0.91381 0.75980 1.90760 1.59293 1.46779 1.48546 1.20720 0.92731 0.94138 1.05535 1.19198 0.93333 0.96653 0.93416 1.20977 0.97223 1.07336 0.94300 1.21137 0.91929 0.96392 0.99751 1.21297 1.00527 1.11809 0.93059 1.19886 0.88794 0.94462 0.90773 1.83934 1.14283 1.81342 1.34578 1.21785 0.82082 1.51043 0.94195 0.88279 1.26618 1.03709 0.95782 0.96051 1.70181 1.32337 1.47621 1.05952 0.84647 0.74000 0.79843 0.77695 1.17873 1.19447 1.18433 1.20215 0.90003 1.11227 0.99729 1.22559 1.00727 1.01037 0.96228 1.22518 0.80569 0.99895 0.97985 1.87941 1.21006 1.78398 1.43956 0.92115 0.91892 0.88961 0.88174 0.89229 0.74860 0.86162 0.83677 0.83428 0.83722 0.86502 0.91845 0.87670 0.89836 0.92850 0.92736 0.88509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 9.56 71.98 0.69 -0.51 16 2 C 0.08 0.89 3.09 30.63 0.09 0.99 16 3 H 0.07 0.61 6.71 -2.39 -0.02 0.59 16 4 C -0.15 -1.67 5.08 30.69 0.16 -1.51 16 5 C 0.14 2.59 2.81 45.11 0.13 2.71 16 6 H 0.07 1.65 7.58 -2.39 -0.02 1.63 16 7 N -0.71 -12.31 4.40 -441.97 -1.94 -14.25 16 8 C 0.52 13.42 7.79 87.66 0.68 14.11 16 9 O -0.58 -21.88 15.70 -3.01 -0.05 -21.92 16 10 C -0.09 -2.06 5.83 29.10 0.17 -1.90 16 11 C -0.03 -0.88 4.37 -19.88 -0.09 -0.97 16 12 C -0.18 -5.88 9.70 22.30 0.22 -5.67 16 13 C -0.07 -2.71 10.04 22.25 0.22 -2.49 16 14 C -0.25 -11.53 9.17 22.39 0.21 -11.32 16 15 C 0.11 5.88 6.65 22.58 0.15 6.03 16 16 O -0.23 -14.84 9.76 -22.79 -0.22 -15.07 16 17 C -0.41 -25.29 9.49 67.92 0.64 -24.65 16 18 H 0.10 5.56 5.20 -2.91 -0.02 5.55 16 19 C -0.02 -1.45 5.49 84.84 0.47 -0.98 16 20 N -0.92 -58.51 13.67 21.62 0.30 -58.22 16 21 Si 1.02 44.42 29.55 68.60 2.03 46.45 16 22 H -0.25 -10.31 7.11 99.48 0.71 -9.61 16 23 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 24 H -0.26 -10.74 7.11 99.48 0.71 -10.04 16 25 C -0.19 -8.73 9.65 22.39 0.22 -8.51 16 26 C -0.17 -3.40 5.82 30.75 0.18 -3.23 16 27 C 0.07 1.20 6.68 72.08 0.48 1.68 16 28 O -0.39 -6.89 10.41 -148.98 -1.55 -8.44 16 29 H 0.06 0.57 8.14 -2.38 -0.02 0.55 16 30 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.09 0.40 8.14 -2.38 -0.02 0.38 16 32 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.41 4.24 7.07 -92.71 -0.66 3.58 16 35 H 0.12 2.25 8.08 -2.39 -0.02 2.23 16 36 H 0.15 1.95 8.09 -2.39 -0.02 1.93 16 37 H 0.15 3.57 8.06 -2.91 -0.02 3.55 16 38 H 0.15 4.16 8.06 -2.91 -0.02 4.14 16 39 H 0.12 5.50 5.64 -2.91 -0.02 5.48 16 40 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 41 H 0.11 4.77 8.06 -2.91 -0.02 4.74 16 42 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 43 H 0.05 1.42 8.14 -2.38 -0.02 1.40 16 44 H 0.05 0.93 7.75 -2.39 -0.02 0.91 16 45 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -84.09 369.76 3.52 -80.57 By element: Atomic # 1 Polarization: 26.76 SS G_CDS: 0.35 Total: 27.10 kcal Atomic # 6 Polarization: -40.83 SS G_CDS: 4.61 Total: -36.22 kcal Atomic # 7 Polarization: -70.82 SS G_CDS: -1.65 Total: -72.47 kcal Atomic # 8 Polarization: -43.61 SS G_CDS: -1.82 Total: -45.43 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Total: -84.09 3.52 -80.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271320871.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.142 kcal (2) G-P(sol) polarization free energy of solvation -84.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds