Wall clock time and date at job start Tue Mar 31 2020 13:28:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 109.48406 * 2 1 4 4 C 1.53092 * 109.47998 * 239.97151 * 2 1 3 5 5 C 1.53176 * 109.16075 * 182.41057 * 4 2 1 6 6 H 1.09001 * 109.54418 * 297.11570 * 5 4 2 7 7 N 1.46508 * 109.54108 * 176.85148 * 5 4 2 8 8 C 1.34777 * 120.00085 * 155.00286 * 7 5 4 9 9 O 1.21285 * 119.99909 * 359.97438 * 8 7 5 10 10 C 1.50697 * 119.99952 * 180.02562 * 8 7 5 11 11 C 1.50693 * 109.47115 * 179.97438 * 10 8 7 12 12 C 1.38305 * 119.92983 * 269.72374 * 11 10 8 13 13 C 1.38108 * 120.06848 * 179.72438 * 12 11 10 14 14 C 1.38882 * 119.92628 * 0.52495 * 13 12 11 15 15 O 1.35752 * 120.06614 * 179.72600 * 14 13 12 16 16 C 1.34827 * 117.00238 * 174.48932 * 15 14 13 17 17 H 1.07998 * 119.99563 * 5.05280 * 16 15 14 18 18 C 1.38654 * 120.00072 * 185.05838 * 16 15 14 19 19 N 1.31558 * 119.99652 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 120.00170 * 359.97438 * 18 16 15 21 21 H 1.48496 * 109.47057 * 89.99903 * 20 18 16 22 22 H 1.48494 * 109.47124 * 210.00070 * 20 18 16 23 23 H 1.48504 * 109.46725 * 330.00246 * 20 18 16 24 24 C 1.38873 * 119.86531 * 359.74574 * 14 13 12 25 25 C 1.38096 * 119.93240 * 0.02562 * 24 14 13 26 26 C 1.53178 * 109.04100 * 56.98421 * 5 4 2 27 27 C 1.53095 * 109.15998 * 303.01910 * 26 5 4 28 28 O 1.42903 * 109.47824 * 120.02152 * 2 1 3 29 29 H 1.08994 * 109.46976 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46821 * 60.00352 * 1 2 3 31 31 H 1.09003 * 109.47006 * 300.00330 * 1 2 3 32 32 H 1.08994 * 109.52464 * 302.31498 * 4 2 1 33 33 H 1.09003 * 109.52146 * 62.50578 * 4 2 1 34 34 H 0.97004 * 119.99583 * 334.99746 * 7 5 4 35 35 H 1.09003 * 109.46527 * 299.99207 * 10 8 7 36 36 H 1.08999 * 109.47191 * 59.99413 * 10 8 7 37 37 H 1.07992 * 119.96558 * 359.97438 * 12 11 10 38 38 H 1.07993 * 120.03351 * 180.27091 * 13 12 11 39 39 H 0.97002 * 119.99531 * 179.97438 * 19 18 16 40 40 H 1.08006 * 120.03640 * 179.97438 * 24 14 13 41 41 H 1.08002 * 119.96943 * 179.97438 * 25 24 14 42 42 H 1.08999 * 109.51827 * 62.92080 * 26 5 4 43 43 H 1.08994 * 109.52469 * 183.11296 * 26 5 4 44 44 H 1.08993 * 109.47963 * 177.58811 * 27 26 5 45 45 H 1.08995 * 109.48039 * 297.61296 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8936 1.0275 0.0000 4 6 2.0406 -0.7223 -1.2496 5 6 3.5711 -0.7709 -1.2121 6 1 3.9690 0.2435 -1.2407 7 7 4.0658 -1.5259 -2.3661 8 6 5.3079 -1.2991 -2.8376 9 8 6.0159 -0.4697 -2.3068 10 6 5.8165 -2.0754 -4.0249 11 6 7.2208 -1.6351 -4.3487 12 6 7.4307 -0.5960 -5.2370 13 6 8.7164 -0.1864 -5.5314 14 6 9.7994 -0.8264 -4.9429 15 8 11.0644 -0.4297 -5.2345 16 6 12.0639 -1.0148 -4.5442 17 1 11.8468 -1.8195 -3.8574 18 6 13.3704 -0.5833 -4.7160 19 7 14.3455 -1.1539 -4.0419 20 14 13.7459 0.8081 -5.9044 21 1 13.6745 2.1056 -5.1857 22 1 15.1093 0.6266 -6.4641 23 1 12.7522 0.7981 -7.0080 24 6 9.5854 -1.8731 -4.0556 25 6 8.2974 -2.2749 -3.7616 26 6 4.0177 -1.4602 0.0809 27 6 3.4307 -0.7095 1.2791 28 8 2.0066 -0.6741 1.1665 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 0.5139 0.8900 32 1 1.6443 -1.7374 -1.2710 33 1 1.7149 -0.1842 -2.1399 34 1 3.4994 -2.1891 -2.7907 35 1 5.8140 -3.1400 -3.7910 36 1 5.1710 -1.8904 -4.8835 37 1 6.5883 -0.1017 -5.6977 38 1 8.8795 0.6279 -6.2218 39 1 15.2595 -0.8523 -4.1624 40 1 10.4257 -2.3730 -3.5966 41 1 8.1303 -3.0892 -3.0721 42 1 3.6613 -2.4903 0.0863 43 1 5.1059 -1.4499 0.1421 44 1 3.7099 -1.2205 2.2004 45 1 3.8194 0.3087 1.2960 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271355250.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:19 Heat of formation + Delta-G solvation = -96.046973 kcal Electronic energy + Delta-G solvation = -25969.154403 eV Core-core repulsion = 22144.925201 eV Total energy + Delta-G solvation = -3824.229202 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.41441 -39.40351 -38.76082 -36.69748 -35.30922 -33.18325 -32.55708 -32.13640 -31.03711 -30.20558 -28.10852 -26.83778 -25.00858 -24.11221 -22.70782 -22.06459 -20.96824 -20.80453 -19.96915 -17.86216 -17.32413 -17.05239 -16.70197 -16.57967 -15.81293 -15.43397 -15.00472 -14.78357 -14.58701 -14.19363 -14.06265 -13.79557 -13.78590 -13.50839 -13.41287 -12.93424 -12.73570 -12.66283 -12.51449 -12.26820 -12.17732 -11.86314 -11.61371 -11.48088 -11.28222 -11.27856 -10.94487 -10.73647 -10.72972 -10.64894 -10.13251 -10.10830 -9.62206 -9.35510 -9.19114 -8.83169 -8.20662 -7.27694 -6.38832 -4.05119 2.17857 2.18759 2.72519 3.08196 3.24161 3.28296 3.40395 3.42468 4.25482 4.26308 4.43447 4.44579 4.50109 4.73809 4.81756 4.85226 4.88915 4.98389 5.06767 5.10792 5.13738 5.23091 5.24522 5.29219 5.30595 5.43055 5.55307 5.59755 5.61708 5.68266 5.74691 5.75994 5.78483 5.91183 6.16133 6.33524 6.36079 6.59586 6.82478 6.87349 7.05117 7.25034 7.33655 7.42354 7.64991 7.83545 8.07051 8.28635 8.96585 9.59424 10.68887 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.026273 B = 0.002213 C = 0.002157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.459574 B =12649.749895 C =12978.528874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.089 3.911 3 H 0.061 0.939 4 C -0.156 4.156 5 C 0.144 3.856 6 H 0.088 0.912 7 N -0.736 5.736 8 C 0.510 3.490 9 O -0.519 6.519 10 C -0.082 4.082 11 C -0.161 4.161 12 C -0.062 4.062 13 C -0.191 4.191 14 C 0.162 3.838 15 O -0.218 6.218 16 C -0.388 4.388 17 H 0.106 0.894 18 C 0.062 3.938 19 N -0.880 5.880 20 Si 0.906 3.094 21 H -0.273 1.273 22 H -0.282 1.282 23 H -0.260 1.260 24 C -0.219 4.219 25 C -0.058 4.058 26 C -0.167 4.167 27 C 0.065 3.935 28 O -0.381 6.381 29 H 0.064 0.936 30 H 0.071 0.929 31 H 0.064 0.936 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.398 0.602 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.110 0.890 38 H 0.116 0.884 39 H 0.279 0.721 40 H 0.133 0.867 41 H 0.106 0.894 42 H 0.072 0.928 43 H 0.081 0.919 44 H 0.097 0.903 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.504 -1.328 4.943 27.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.031 3.969 3 H 0.079 0.921 4 C -0.194 4.194 5 C 0.039 3.961 6 H 0.106 0.894 7 N -0.389 5.389 8 C 0.297 3.703 9 O -0.393 6.393 10 C -0.122 4.122 11 C -0.162 4.162 12 C -0.080 4.080 13 C -0.210 4.210 14 C 0.110 3.890 15 O -0.123 6.123 16 C -0.464 4.464 17 H 0.124 0.876 18 C -0.141 4.141 19 N -0.518 5.518 20 Si 0.731 3.269 21 H -0.199 1.199 22 H -0.208 1.208 23 H -0.184 1.184 24 C -0.238 4.238 25 C -0.077 4.077 26 C -0.206 4.206 27 C -0.013 4.013 28 O -0.300 6.300 29 H 0.083 0.917 30 H 0.090 0.910 31 H 0.083 0.917 32 H 0.096 0.904 33 H 0.098 0.902 34 H 0.232 0.768 35 H 0.111 0.889 36 H 0.111 0.889 37 H 0.128 0.872 38 H 0.134 0.866 39 H 0.089 0.911 40 H 0.150 0.850 41 H 0.124 0.876 42 H 0.091 0.909 43 H 0.100 0.900 44 H 0.115 0.885 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -26.737 -0.633 5.335 27.272 hybrid contribution 0.341 0.176 -0.687 0.787 sum -26.397 -0.457 4.648 26.807 Atomic orbital electron populations 1.21763 0.92767 1.03021 1.02599 1.22038 0.95236 0.95152 0.84514 0.92119 1.22530 0.94836 1.02664 0.99418 1.20901 0.93052 0.96800 0.85337 0.89397 1.46149 1.16516 1.43061 1.33170 1.21054 0.80748 0.83403 0.85141 1.90749 1.55741 1.33649 1.59168 1.20431 0.95752 1.00049 0.95926 1.18697 0.92325 1.01530 1.03697 1.20398 0.95413 0.95373 0.96856 1.20150 0.90701 1.03770 1.06408 1.19120 0.85094 0.92235 0.92579 1.83569 1.11583 1.59939 1.57222 1.20771 0.84671 1.17959 1.22991 0.87640 1.24471 0.94015 0.98206 0.97384 1.69651 1.00394 1.41505 1.40279 0.86174 0.77713 0.81488 0.81481 1.19893 1.20813 1.18379 1.21222 0.97421 1.01185 1.03997 1.20563 0.91946 0.98088 0.97059 1.22618 1.02494 1.00613 0.94872 1.22553 0.80454 0.99975 0.98284 1.87933 1.21294 1.77909 1.42861 0.91739 0.90999 0.91663 0.90443 0.90215 0.76839 0.88882 0.88911 0.87242 0.86559 0.91096 0.84966 0.87571 0.90889 0.89993 0.88451 0.92815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.81 9.56 37.16 0.36 -0.45 16 2 C 0.09 0.65 3.26 -26.68 -0.09 0.56 16 3 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 4 C -0.16 -1.05 4.89 -26.59 -0.13 -1.18 16 5 C 0.14 1.33 2.54 -67.74 -0.17 1.16 16 6 H 0.09 1.01 7.58 -51.93 -0.39 0.61 16 7 N -0.74 -6.75 5.08 -53.62 -0.27 -7.02 16 8 C 0.51 6.68 7.79 -10.99 -0.09 6.59 16 9 O -0.52 -9.42 15.70 5.55 0.09 -9.33 16 10 C -0.08 -0.97 5.83 -29.04 -0.17 -1.14 16 11 C -0.16 -2.71 4.38 -104.57 -0.46 -3.17 16 12 C -0.06 -1.09 9.69 -39.60 -0.38 -1.48 16 13 C -0.19 -3.94 9.99 -39.39 -0.39 -4.33 16 14 C 0.16 3.87 6.65 -39.11 -0.26 3.61 16 15 O -0.22 -5.92 8.59 0.05 0.00 -5.92 16 16 C -0.39 -11.19 9.95 30.89 0.31 -10.89 16 17 H 0.11 3.10 5.44 -52.49 -0.29 2.82 16 18 C 0.06 1.78 5.49 -17.52 -0.10 1.68 16 19 N -0.88 -25.82 13.96 55.48 0.77 -25.05 16 20 Si 0.91 22.09 28.62 -169.99 -4.86 17.23 16 21 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 H -0.26 -6.34 7.11 56.52 0.40 -5.94 16 24 C -0.22 -4.91 9.17 -39.40 -0.36 -5.27 16 25 C -0.06 -1.09 9.69 -39.61 -0.38 -1.48 16 26 C -0.17 -1.56 5.72 -26.59 -0.15 -1.71 16 27 C 0.06 0.55 6.84 37.21 0.25 0.81 16 28 O -0.38 -3.53 10.41 -35.23 -0.37 -3.90 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.40 2.41 8.61 -40.82 -0.35 2.06 16 35 H 0.09 0.89 8.08 -51.93 -0.42 0.47 16 36 H 0.09 0.85 8.08 -51.93 -0.42 0.43 16 37 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 38 H 0.12 2.23 8.06 -52.49 -0.42 1.81 16 39 H 0.28 7.55 8.31 -40.82 -0.34 7.21 16 40 H 0.13 3.10 5.64 -52.48 -0.30 2.80 16 41 H 0.11 1.73 8.06 -52.49 -0.42 1.30 16 42 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 LS Contribution 372.46 15.07 5.61 5.61 Total: -1.00 -33.72 372.46 -8.04 -41.76 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -6.80 Total: 3.30 kcal Atomic # 6 Polarization: -14.46 SS G_CDS: -2.22 Total: -16.68 kcal Atomic # 7 Polarization: -32.58 SS G_CDS: 0.50 Total: -32.07 kcal Atomic # 8 Polarization: -18.87 SS G_CDS: -0.28 Total: -19.15 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.86 Total: 17.23 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.72 -8.04 -41.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271355250.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.289 kcal (2) G-P(sol) polarization free energy of solvation -33.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds