Wall clock time and date at job start Tue Mar 31 2020 13:28:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 109.48406 * 2 1 4 4 C 1.53092 * 109.47998 * 239.97151 * 2 1 3 5 5 C 1.53176 * 109.16075 * 182.41057 * 4 2 1 6 6 H 1.09001 * 109.54418 * 297.11570 * 5 4 2 7 7 N 1.46508 * 109.54108 * 176.85148 * 5 4 2 8 8 C 1.34777 * 120.00085 * 155.00286 * 7 5 4 9 9 O 1.21285 * 119.99909 * 359.97438 * 8 7 5 10 10 C 1.50697 * 119.99952 * 180.02562 * 8 7 5 11 11 C 1.50693 * 109.47115 * 179.97438 * 10 8 7 12 12 C 1.38305 * 119.92983 * 269.72374 * 11 10 8 13 13 C 1.38108 * 120.06848 * 179.72438 * 12 11 10 14 14 C 1.38882 * 119.92628 * 0.52495 * 13 12 11 15 15 O 1.35752 * 120.06614 * 179.72600 * 14 13 12 16 16 C 1.34827 * 117.00238 * 174.48932 * 15 14 13 17 17 H 1.07998 * 119.99563 * 5.05280 * 16 15 14 18 18 C 1.38654 * 120.00072 * 185.05838 * 16 15 14 19 19 N 1.31558 * 119.99652 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 120.00170 * 359.97438 * 18 16 15 21 21 H 1.48496 * 109.47057 * 89.99903 * 20 18 16 22 22 H 1.48494 * 109.47124 * 210.00070 * 20 18 16 23 23 H 1.48504 * 109.46725 * 330.00246 * 20 18 16 24 24 C 1.38873 * 119.86531 * 359.74574 * 14 13 12 25 25 C 1.38096 * 119.93240 * 0.02562 * 24 14 13 26 26 C 1.53178 * 109.04100 * 56.98421 * 5 4 2 27 27 C 1.53095 * 109.15998 * 303.01910 * 26 5 4 28 28 O 1.42903 * 109.47824 * 120.02152 * 2 1 3 29 29 H 1.08994 * 109.46976 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46821 * 60.00352 * 1 2 3 31 31 H 1.09003 * 109.47006 * 300.00330 * 1 2 3 32 32 H 1.08994 * 109.52464 * 302.31498 * 4 2 1 33 33 H 1.09003 * 109.52146 * 62.50578 * 4 2 1 34 34 H 0.97004 * 119.99583 * 334.99746 * 7 5 4 35 35 H 1.09003 * 109.46527 * 299.99207 * 10 8 7 36 36 H 1.08999 * 109.47191 * 59.99413 * 10 8 7 37 37 H 1.07992 * 119.96558 * 359.97438 * 12 11 10 38 38 H 1.07993 * 120.03351 * 180.27091 * 13 12 11 39 39 H 0.97002 * 119.99531 * 179.97438 * 19 18 16 40 40 H 1.08006 * 120.03640 * 179.97438 * 24 14 13 41 41 H 1.08002 * 119.96943 * 179.97438 * 25 24 14 42 42 H 1.08999 * 109.51827 * 62.92080 * 26 5 4 43 43 H 1.08994 * 109.52469 * 183.11296 * 26 5 4 44 44 H 1.08993 * 109.47963 * 177.58811 * 27 26 5 45 45 H 1.08995 * 109.48039 * 297.61296 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8936 1.0275 0.0000 4 6 2.0406 -0.7223 -1.2496 5 6 3.5711 -0.7709 -1.2121 6 1 3.9690 0.2435 -1.2407 7 7 4.0658 -1.5259 -2.3661 8 6 5.3079 -1.2991 -2.8376 9 8 6.0159 -0.4697 -2.3068 10 6 5.8165 -2.0754 -4.0249 11 6 7.2208 -1.6351 -4.3487 12 6 7.4307 -0.5960 -5.2370 13 6 8.7164 -0.1864 -5.5314 14 6 9.7994 -0.8264 -4.9429 15 8 11.0644 -0.4297 -5.2345 16 6 12.0639 -1.0148 -4.5442 17 1 11.8468 -1.8195 -3.8574 18 6 13.3704 -0.5833 -4.7160 19 7 14.3455 -1.1539 -4.0419 20 14 13.7459 0.8081 -5.9044 21 1 13.6745 2.1056 -5.1857 22 1 15.1093 0.6266 -6.4641 23 1 12.7522 0.7981 -7.0080 24 6 9.5854 -1.8731 -4.0556 25 6 8.2974 -2.2749 -3.7616 26 6 4.0177 -1.4602 0.0809 27 6 3.4307 -0.7095 1.2791 28 8 2.0066 -0.6741 1.1665 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 0.5139 0.8900 32 1 1.6443 -1.7374 -1.2710 33 1 1.7149 -0.1842 -2.1399 34 1 3.4994 -2.1891 -2.7907 35 1 5.8140 -3.1400 -3.7910 36 1 5.1710 -1.8904 -4.8835 37 1 6.5883 -0.1017 -5.6977 38 1 8.8795 0.6279 -6.2218 39 1 15.2595 -0.8523 -4.1624 40 1 10.4257 -2.3730 -3.5966 41 1 8.1303 -3.0892 -3.0721 42 1 3.6613 -2.4903 0.0863 43 1 5.1059 -1.4499 0.1421 44 1 3.7099 -1.2205 2.2004 45 1 3.8194 0.3087 1.2960 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271355250.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:18 Heat of formation + Delta-G solvation = -119.046807 kcal Electronic energy + Delta-G solvation = -25970.151751 eV Core-core repulsion = 22144.925201 eV Total energy + Delta-G solvation = -3825.226550 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.34551 -40.80130 -39.91933 -38.31740 -36.21464 -34.52978 -33.75042 -33.35509 -32.17427 -31.80245 -28.87704 -28.17038 -26.78942 -24.90567 -23.73124 -23.44619 -22.26100 -21.56430 -21.05696 -19.82602 -19.12330 -18.04059 -17.48245 -17.30013 -16.79344 -16.59130 -16.37412 -15.91863 -15.73871 -15.69676 -15.51228 -15.22158 -14.91565 -14.74380 -14.42305 -14.34051 -14.15333 -14.05435 -13.49468 -13.16362 -13.05228 -12.91256 -12.79251 -12.51925 -12.47691 -12.38049 -12.33354 -12.08624 -11.96730 -11.93587 -11.43552 -11.28978 -11.01939 -10.88625 -10.49652 -10.06092 -9.79522 -8.98602 -8.51378 -6.23918 0.57833 0.61219 1.29207 1.34117 1.50430 1.72871 2.20172 2.26948 2.77053 2.80872 3.04877 3.17837 3.63555 3.76612 3.84246 3.89282 4.03211 4.03687 4.11802 4.17025 4.19749 4.37803 4.47119 4.48454 4.51330 4.57575 4.69145 4.70753 4.75755 4.81619 4.83653 4.96831 4.99611 5.01548 5.06738 5.21097 5.25136 5.33375 5.37025 5.52280 5.56040 5.73362 5.78997 5.90572 6.24260 6.24918 6.64341 6.82763 7.37262 7.57553 8.60413 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.026273 B = 0.002213 C = 0.002157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.459574 B =12649.749895 C =12978.528874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.080 3.920 3 H 0.056 0.944 4 C -0.144 4.144 5 C 0.142 3.858 6 H 0.062 0.938 7 N -0.714 5.714 8 C 0.511 3.489 9 O -0.580 6.580 10 C -0.080 4.080 11 C -0.137 4.137 12 C -0.059 4.059 13 C -0.194 4.194 14 C 0.117 3.883 15 O -0.246 6.246 16 C -0.400 4.400 17 H 0.079 0.921 18 C 0.008 3.992 19 N -0.924 5.924 20 Si 0.973 3.027 21 H -0.268 1.268 22 H -0.264 1.264 23 H -0.262 1.262 24 C -0.239 4.239 25 C -0.066 4.066 26 C -0.162 4.162 27 C 0.065 3.935 28 O -0.393 6.393 29 H 0.066 0.934 30 H 0.089 0.911 31 H 0.061 0.939 32 H 0.091 0.909 33 H 0.095 0.905 34 H 0.418 0.582 35 H 0.126 0.874 36 H 0.136 0.864 37 H 0.154 0.846 38 H 0.128 0.872 39 H 0.285 0.715 40 H 0.105 0.895 41 H 0.132 0.868 42 H 0.082 0.918 43 H 0.056 0.944 44 H 0.106 0.894 45 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.894 -1.403 3.655 32.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.022 3.978 3 H 0.074 0.926 4 C -0.182 4.182 5 C 0.037 3.963 6 H 0.081 0.919 7 N -0.367 5.367 8 C 0.299 3.701 9 O -0.458 6.458 10 C -0.119 4.119 11 C -0.138 4.138 12 C -0.077 4.077 13 C -0.213 4.213 14 C 0.068 3.932 15 O -0.154 6.154 16 C -0.476 4.476 17 H 0.096 0.904 18 C -0.191 4.191 19 N -0.564 5.564 20 Si 0.795 3.205 21 H -0.193 1.193 22 H -0.189 1.189 23 H -0.186 1.186 24 C -0.258 4.258 25 C -0.084 4.084 26 C -0.201 4.201 27 C -0.012 4.012 28 O -0.313 6.313 29 H 0.085 0.915 30 H 0.108 0.892 31 H 0.080 0.920 32 H 0.110 0.890 33 H 0.114 0.886 34 H 0.256 0.744 35 H 0.144 0.856 36 H 0.154 0.846 37 H 0.172 0.828 38 H 0.146 0.854 39 H 0.094 0.906 40 H 0.123 0.877 41 H 0.150 0.850 42 H 0.101 0.899 43 H 0.075 0.925 44 H 0.124 0.876 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -31.224 -0.754 4.042 31.493 hybrid contribution 1.298 0.100 -0.180 1.315 sum -29.925 -0.654 3.862 30.181 Atomic orbital electron populations 1.21767 0.91231 1.03406 1.03362 1.22248 0.96435 0.94915 0.84198 0.92557 1.22458 0.92396 1.03664 0.99711 1.20916 0.94828 0.95424 0.85127 0.91938 1.45924 1.15473 1.42716 1.32560 1.21201 0.81282 0.82594 0.85047 1.90758 1.57531 1.36434 1.61108 1.20563 0.92698 1.01559 0.97054 1.19317 0.94630 0.99222 1.00609 1.20953 0.95297 0.95110 0.96355 1.20516 0.91031 1.03718 1.06012 1.19687 0.84932 0.93900 0.94674 1.83507 1.12366 1.61140 1.58379 1.20704 0.85919 1.17824 1.23164 0.90385 1.25317 0.93651 1.00817 0.99276 1.69736 1.00942 1.43453 1.42315 0.85188 0.78021 0.78248 0.79054 1.19289 1.18893 1.18632 1.21250 0.98555 1.01513 1.04507 1.20910 0.90968 0.99017 0.97474 1.22541 1.00853 1.01273 0.95428 1.22546 0.80480 0.99730 0.98452 1.87926 1.21208 1.78180 1.43966 0.91491 0.89205 0.92014 0.89049 0.88607 0.74419 0.85614 0.84606 0.82841 0.85403 0.90561 0.87665 0.85043 0.89939 0.92537 0.87579 0.93379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 9.56 71.98 0.69 -0.49 16 2 C 0.08 0.99 3.26 30.63 0.10 1.09 16 3 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 4 C -0.14 -1.45 4.89 30.68 0.15 -1.30 16 5 C 0.14 2.30 2.54 45.11 0.11 2.42 16 6 H 0.06 1.38 7.58 -2.39 -0.02 1.36 16 7 N -0.71 -10.35 5.08 -441.95 -2.25 -12.60 16 8 C 0.51 11.60 7.79 87.66 0.68 12.28 16 9 O -0.58 -20.21 15.70 -3.05 -0.05 -20.25 16 10 C -0.08 -1.45 5.83 29.10 0.17 -1.28 16 11 C -0.14 -4.16 4.38 -19.83 -0.09 -4.25 16 12 C -0.06 -1.90 9.69 22.25 0.22 -1.68 16 13 C -0.19 -7.84 9.99 22.39 0.22 -7.62 16 14 C 0.12 5.80 6.65 22.58 0.15 5.95 16 15 O -0.25 -14.04 8.59 -22.73 -0.20 -14.24 16 16 C -0.40 -24.60 9.95 67.92 0.68 -23.92 16 17 H 0.08 5.05 5.44 -2.91 -0.02 5.03 16 18 C 0.01 0.45 5.49 84.83 0.47 0.91 16 19 N -0.92 -56.78 13.96 21.61 0.30 -56.48 16 20 Si 0.97 46.99 28.62 68.60 1.96 48.95 16 21 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 22 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 23 H -0.26 -12.59 7.11 99.48 0.71 -11.88 16 24 C -0.24 -11.21 9.17 22.39 0.21 -11.01 16 25 C -0.07 -2.41 9.69 22.25 0.22 -2.19 16 26 C -0.16 -2.82 5.72 30.69 0.18 -2.64 16 27 C 0.07 1.07 6.84 72.01 0.49 1.56 16 28 O -0.39 -6.66 10.41 -148.98 -1.55 -8.21 16 29 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.09 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.42 2.83 8.61 -92.71 -0.80 2.03 16 35 H 0.13 1.62 8.08 -2.39 -0.02 1.60 16 36 H 0.14 1.47 8.08 -2.39 -0.02 1.45 16 37 H 0.15 3.60 8.06 -2.91 -0.02 3.57 16 38 H 0.13 4.77 8.06 -2.91 -0.02 4.75 16 39 H 0.28 16.01 8.31 -92.71 -0.77 15.23 16 40 H 0.11 5.42 5.64 -2.91 -0.02 5.40 16 41 H 0.13 4.06 8.06 -2.91 -0.02 4.04 16 42 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 44 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 45 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 Total: -1.00 -80.03 372.46 3.06 -76.97 By element: Atomic # 1 Polarization: 17.84 SS G_CDS: 0.20 Total: 18.04 kcal Atomic # 6 Polarization: -36.82 SS G_CDS: 4.64 Total: -32.18 kcal Atomic # 7 Polarization: -67.13 SS G_CDS: -1.94 Total: -69.08 kcal Atomic # 8 Polarization: -40.91 SS G_CDS: -1.79 Total: -42.70 kcal Atomic # 14 Polarization: 46.99 SS G_CDS: 1.96 Total: 48.95 kcal Total: -80.03 3.06 -76.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271355250.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.079 kcal (2) G-P(sol) polarization free energy of solvation -80.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds