Wall clock time and date at job start Tue Mar 31 2020 13:27:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08999 * 109.48322 * 2 1 4 4 C 1.53101 * 109.48007 * 239.97335 * 2 1 3 5 5 C 1.53171 * 109.16200 * 182.41006 * 4 2 1 6 6 H 1.09002 * 109.54912 * 297.02633 * 5 4 2 7 7 C 1.52998 * 109.54484 * 176.84923 * 5 4 2 8 8 N 1.46497 * 109.47539 * 175.00102 * 7 5 4 9 9 C 1.34776 * 120.00030 * 180.02562 * 8 7 5 10 10 O 1.21592 * 119.99976 * 359.97438 * 9 8 7 11 11 C 1.47535 * 119.99957 * 179.97438 * 9 8 7 12 12 C 1.39666 * 120.19714 * 359.97438 * 11 9 8 13 13 C 1.37824 * 119.92133 * 179.97438 * 12 11 9 14 14 C 1.38570 * 120.32455 * 359.97438 * 13 12 11 15 15 C 1.38032 * 120.40202 * 0.02562 * 14 13 12 16 16 C 1.38838 * 120.06526 * 359.74438 * 15 14 13 17 17 O 1.35523 * 120.15833 * 180.27516 * 16 15 14 18 18 C 1.34820 * 116.99848 * 354.40058 * 17 16 15 19 19 H 1.08003 * 120.00256 * 5.07012 * 18 17 16 20 20 C 1.38706 * 120.00008 * 185.06487 * 18 17 16 21 21 N 1.31523 * 119.99427 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 120.00010 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47390 * 60.00291 * 22 20 18 24 24 H 1.48501 * 109.46794 * 179.97438 * 22 20 18 25 25 H 1.48493 * 109.47191 * 300.00110 * 22 20 18 26 26 C 1.53182 * 109.03702 * 56.98277 * 5 4 2 27 27 C 1.53090 * 109.16341 * 303.01524 * 26 5 4 28 28 O 1.42904 * 109.47853 * 120.03616 * 2 1 3 29 29 H 1.09000 * 109.47677 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47521 * 300.02565 * 1 2 3 31 31 H 1.09007 * 109.47117 * 60.02435 * 1 2 3 32 32 H 1.08997 * 109.51776 * 62.50490 * 4 2 1 33 33 H 1.08996 * 109.57065 * 302.34789 * 4 2 1 34 34 H 1.09000 * 109.47347 * 54.99795 * 7 5 4 35 35 H 1.09004 * 109.47302 * 295.00168 * 7 5 4 36 36 H 0.97001 * 119.99633 * 359.97438 * 8 7 5 37 37 H 1.08004 * 120.03955 * 359.95965 * 12 11 9 38 38 H 1.07997 * 119.84404 * 179.97438 * 13 12 11 39 39 H 1.07998 * 119.80271 * 179.97438 * 14 13 12 40 40 H 1.08002 * 119.96680 * 179.97438 * 15 14 13 41 41 H 0.96999 * 119.99136 * 179.97438 * 21 20 18 42 42 H 1.08992 * 109.52282 * 62.92848 * 26 5 4 43 43 H 1.09005 * 109.51836 * 183.11325 * 26 5 4 44 44 H 1.08999 * 109.48275 * 297.62791 * 27 26 5 45 45 H 1.09000 * 109.48129 * 177.58822 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0405 -0.7223 -1.2497 5 6 3.5710 -0.7709 -1.2122 6 1 3.9690 0.2434 -1.2424 7 6 4.0877 -1.5594 -2.4173 8 7 5.5513 -1.5042 -2.4460 9 6 6.2303 -2.1319 -3.4265 10 8 5.6280 -2.7445 -4.2870 11 6 7.7043 -2.0758 -3.4557 12 6 8.4002 -1.3730 -2.4696 13 6 9.7772 -1.3247 -2.5021 14 6 10.4763 -1.9711 -3.5089 15 6 9.8021 -2.6696 -4.4901 16 6 8.4153 -2.7329 -4.4706 17 8 7.7517 -3.4229 -5.4299 18 6 8.4876 -3.9282 -6.4402 19 1 9.5643 -3.8461 -6.4176 20 6 7.8620 -4.5536 -7.5085 21 7 6.5509 -4.6541 -7.5356 22 14 8.8817 -5.2544 -8.9079 23 1 9.8054 -6.2891 -8.3775 24 1 7.9814 -5.8664 -9.9181 25 1 9.6687 -4.1656 -9.5404 26 6 4.0175 -1.4602 0.0808 27 6 3.4307 -0.7095 1.2790 28 8 2.0065 -0.6744 1.1663 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5142 0.8897 31 1 -0.3634 0.5135 -0.8903 32 1 1.7148 -0.1842 -2.1399 33 1 1.6442 -1.7374 -1.2722 34 1 3.6896 -1.1243 -3.3340 35 1 3.7647 -2.5975 -2.3379 36 1 6.0317 -1.0152 -1.7597 37 1 7.8599 -0.8676 -1.6827 38 1 10.3140 -0.7805 -1.7392 39 1 11.5553 -1.9274 -3.5264 40 1 10.3541 -3.1704 -5.2717 41 1 6.1134 -5.0911 -8.2829 42 1 3.6612 -2.4903 0.0862 43 1 5.1058 -1.4499 0.1419 44 1 3.8192 0.3087 1.2958 45 1 3.7099 -1.2206 2.2004 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271558993.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:27:03 Heat of formation + Delta-G solvation = -94.127103 kcal Electronic energy + Delta-G solvation = -26600.533887 eV Core-core repulsion = 22776.387936 eV Total energy + Delta-G solvation = -3824.145951 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.99291 -39.42376 -38.03075 -36.34176 -35.46484 -33.12797 -32.61065 -32.32475 -30.50101 -28.93048 -28.41555 -26.27507 -25.32302 -23.62749 -22.94375 -21.73644 -21.14665 -20.40530 -19.77647 -18.04677 -17.56832 -16.54932 -16.24101 -15.89781 -15.73668 -15.11753 -14.76430 -14.64352 -14.41230 -14.20316 -14.01483 -13.95001 -13.67274 -13.38267 -12.83667 -12.64670 -12.62011 -12.49858 -12.36067 -12.09147 -12.00347 -11.71486 -11.35351 -11.31248 -11.14197 -11.05463 -10.88968 -10.81162 -10.79346 -10.48521 -10.45574 -9.66580 -9.57392 -8.87780 -8.83866 -8.53871 -8.27040 -7.31261 -6.44280 -4.04382 1.71601 2.31386 3.11569 3.13644 3.16157 3.54370 3.68006 3.76187 3.93622 4.48570 4.50199 4.62291 4.65091 4.71867 4.94076 5.03398 5.06602 5.17111 5.17680 5.28628 5.32596 5.40880 5.45604 5.48922 5.52654 5.61364 5.67744 5.73744 5.74558 5.86658 5.91172 5.96240 5.99771 6.11218 6.12814 6.24638 6.55711 6.68766 6.90563 6.96762 7.03190 7.05477 7.23547 7.28812 7.68990 7.92145 8.13285 8.95117 9.11427 9.67600 10.69454 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.016805 B = 0.002945 C = 0.002551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.752004 B = 9504.848556 C =10973.642425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.087 3.913 3 H 0.057 0.943 4 C -0.143 4.143 5 C -0.100 4.100 6 H 0.076 0.924 7 C 0.131 3.869 8 N -0.744 5.744 9 C 0.553 3.447 10 O -0.501 6.501 11 C -0.227 4.227 12 C -0.039 4.039 13 C -0.231 4.231 14 C -0.051 4.051 15 C -0.238 4.238 16 C 0.189 3.811 17 O -0.123 6.123 18 C -0.405 4.405 19 H 0.093 0.907 20 C 0.045 3.955 21 N -0.833 5.833 22 Si 0.941 3.059 23 H -0.269 1.269 24 H -0.277 1.277 25 H -0.269 1.269 26 C -0.152 4.152 27 C 0.063 3.937 28 O -0.382 6.382 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.390 0.610 37 H 0.110 0.890 38 H 0.109 0.891 39 H 0.110 0.890 40 H 0.132 0.868 41 H 0.272 0.728 42 H 0.075 0.925 43 H 0.075 0.925 44 H 0.049 0.951 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.649 9.779 14.758 18.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.030 3.970 3 H 0.075 0.925 4 C -0.181 4.181 5 C -0.119 4.119 6 H 0.095 0.905 7 C 0.007 3.993 8 N -0.400 5.400 9 C 0.342 3.658 10 O -0.375 6.375 11 C -0.232 4.232 12 C -0.058 4.058 13 C -0.250 4.250 14 C -0.070 4.070 15 C -0.257 4.257 16 C 0.129 3.871 17 O -0.021 6.021 18 C -0.480 4.480 19 H 0.111 0.889 20 C -0.163 4.163 21 N -0.464 5.464 22 Si 0.765 3.235 23 H -0.194 1.194 24 H -0.202 1.202 25 H -0.194 1.194 26 C -0.190 4.190 27 C -0.014 4.014 28 O -0.301 6.301 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.090 0.910 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.225 0.775 37 H 0.128 0.872 38 H 0.127 0.873 39 H 0.128 0.872 40 H 0.149 0.851 41 H 0.082 0.918 42 H 0.094 0.906 43 H 0.094 0.906 44 H 0.067 0.933 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -5.708 9.034 13.997 17.610 hybrid contribution 1.169 0.035 -0.527 1.283 sum -4.539 9.068 13.470 16.860 Atomic orbital electron populations 1.21769 0.93102 1.03051 1.02337 1.22077 0.95014 0.94875 0.85069 0.92533 1.22215 0.94778 1.02567 0.98567 1.21439 0.95845 0.99858 0.94757 0.90540 1.21195 0.80777 1.00268 0.97027 1.45888 1.06317 1.57107 1.30670 1.18238 0.87361 0.79038 0.81127 1.90950 1.69666 1.40449 1.36455 1.18859 0.91890 1.11046 1.01366 1.20739 0.94241 0.95412 0.95364 1.20453 0.93774 1.08523 1.02280 1.20894 0.98671 0.94286 0.93126 1.21163 0.93843 1.07669 1.03031 1.19282 0.90251 0.88627 0.88957 1.84177 1.34640 1.55304 1.28015 1.21456 0.91298 1.37264 0.98021 0.88927 1.25388 0.96112 0.96771 0.98040 1.70124 1.07914 1.37751 1.30591 0.85795 0.78913 0.79246 0.79551 1.19370 1.20151 1.19367 1.22279 1.01373 1.00876 0.94464 1.22562 0.80948 0.99457 0.98421 1.87925 1.21097 1.78058 1.43066 0.91713 0.91974 0.91022 0.90456 0.90492 0.91742 0.91737 0.77509 0.87185 0.87306 0.87193 0.85082 0.91809 0.90581 0.90626 0.93307 0.88874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.56 37.15 0.36 -0.75 16 2 C 0.09 0.78 3.26 -26.68 -0.09 0.70 16 3 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 4 C -0.14 -1.36 4.71 -26.59 -0.13 -1.48 16 5 C -0.10 -1.02 2.31 -90.44 -0.21 -1.23 16 6 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 7 C 0.13 1.87 5.07 -4.04 -0.02 1.85 16 8 N -0.74 -11.85 5.27 -61.35 -0.32 -12.17 16 9 C 0.55 12.19 7.76 -12.47 -0.10 12.09 16 10 O -0.50 -13.85 15.17 -16.57 -0.25 -14.10 16 11 C -0.23 -4.93 5.89 -104.81 -0.62 -5.55 16 12 C -0.04 -0.66 9.53 -39.20 -0.37 -1.03 16 13 C -0.23 -3.76 10.02 -39.61 -0.40 -4.16 16 14 C -0.05 -0.90 10.03 -39.53 -0.40 -1.30 16 15 C -0.24 -5.12 9.16 -39.43 -0.36 -5.48 16 16 C 0.19 4.70 6.66 -38.60 -0.26 4.45 16 17 O -0.12 -3.66 7.84 -21.08 -0.17 -3.83 16 18 C -0.40 -11.50 9.49 30.91 0.29 -11.21 16 19 H 0.09 2.38 5.21 -52.48 -0.27 2.11 16 20 C 0.04 1.25 5.49 -17.51 -0.10 1.16 16 21 N -0.83 -25.22 13.67 55.48 0.76 -24.46 16 22 Si 0.94 20.58 29.55 -169.99 -5.02 15.55 16 23 H -0.27 -5.66 7.11 56.52 0.40 -5.25 16 24 H -0.28 -5.92 7.11 56.52 0.40 -5.51 16 25 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 26 C -0.15 -1.46 5.26 -26.59 -0.14 -1.60 16 27 C 0.06 0.55 6.84 37.20 0.25 0.80 16 28 O -0.38 -4.05 10.41 -35.23 -0.37 -4.42 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.45 8.14 -51.92 -0.42 0.03 16 32 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 35 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 36 H 0.39 4.94 5.74 -40.82 -0.23 4.70 16 37 H 0.11 1.42 6.40 -52.48 -0.34 1.09 16 38 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 39 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 40 H 0.13 2.78 5.64 -52.49 -0.30 2.48 16 41 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 42 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.08 0.67 7.31 -51.93 -0.38 0.29 16 44 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 LS Contribution 366.69 15.07 5.53 5.53 Total: -1.00 -35.05 366.69 -8.69 -43.74 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -6.57 Total: 6.90 kcal Atomic # 6 Polarization: -10.47 SS G_CDS: -2.27 Total: -12.75 kcal Atomic # 7 Polarization: -37.06 SS G_CDS: 0.44 Total: -36.63 kcal Atomic # 8 Polarization: -21.56 SS G_CDS: -0.78 Total: -22.34 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -35.05 -8.69 -43.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271558993.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.385 kcal (2) G-P(sol) polarization free energy of solvation -35.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds