Wall clock time and date at job start Tue Mar 31 2020 13:27:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08999 * 109.48322 * 2 1 4 4 C 1.53101 * 109.48007 * 239.97335 * 2 1 3 5 5 C 1.53171 * 109.16200 * 182.41006 * 4 2 1 6 6 H 1.09002 * 109.54912 * 297.02633 * 5 4 2 7 7 C 1.52998 * 109.54484 * 176.84923 * 5 4 2 8 8 N 1.46497 * 109.47539 * 175.00102 * 7 5 4 9 9 C 1.34776 * 120.00030 * 180.02562 * 8 7 5 10 10 O 1.21592 * 119.99976 * 359.97438 * 9 8 7 11 11 C 1.47535 * 119.99957 * 179.97438 * 9 8 7 12 12 C 1.39666 * 120.19714 * 359.97438 * 11 9 8 13 13 C 1.37824 * 119.92133 * 179.97438 * 12 11 9 14 14 C 1.38570 * 120.32455 * 359.97438 * 13 12 11 15 15 C 1.38032 * 120.40202 * 0.02562 * 14 13 12 16 16 C 1.38838 * 120.06526 * 359.74438 * 15 14 13 17 17 O 1.35523 * 120.15833 * 180.27516 * 16 15 14 18 18 C 1.34820 * 116.99848 * 354.40058 * 17 16 15 19 19 H 1.08003 * 120.00256 * 5.07012 * 18 17 16 20 20 C 1.38706 * 120.00008 * 185.06487 * 18 17 16 21 21 N 1.31523 * 119.99427 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 120.00010 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47390 * 60.00291 * 22 20 18 24 24 H 1.48501 * 109.46794 * 179.97438 * 22 20 18 25 25 H 1.48493 * 109.47191 * 300.00110 * 22 20 18 26 26 C 1.53182 * 109.03702 * 56.98277 * 5 4 2 27 27 C 1.53090 * 109.16341 * 303.01524 * 26 5 4 28 28 O 1.42904 * 109.47853 * 120.03616 * 2 1 3 29 29 H 1.09000 * 109.47677 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47521 * 300.02565 * 1 2 3 31 31 H 1.09007 * 109.47117 * 60.02435 * 1 2 3 32 32 H 1.08997 * 109.51776 * 62.50490 * 4 2 1 33 33 H 1.08996 * 109.57065 * 302.34789 * 4 2 1 34 34 H 1.09000 * 109.47347 * 54.99795 * 7 5 4 35 35 H 1.09004 * 109.47302 * 295.00168 * 7 5 4 36 36 H 0.97001 * 119.99633 * 359.97438 * 8 7 5 37 37 H 1.08004 * 120.03955 * 359.95965 * 12 11 9 38 38 H 1.07997 * 119.84404 * 179.97438 * 13 12 11 39 39 H 1.07998 * 119.80271 * 179.97438 * 14 13 12 40 40 H 1.08002 * 119.96680 * 179.97438 * 15 14 13 41 41 H 0.96999 * 119.99136 * 179.97438 * 21 20 18 42 42 H 1.08992 * 109.52282 * 62.92848 * 26 5 4 43 43 H 1.09005 * 109.51836 * 183.11325 * 26 5 4 44 44 H 1.08999 * 109.48275 * 297.62791 * 27 26 5 45 45 H 1.09000 * 109.48129 * 177.58822 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0405 -0.7223 -1.2497 5 6 3.5710 -0.7709 -1.2122 6 1 3.9690 0.2434 -1.2424 7 6 4.0877 -1.5594 -2.4173 8 7 5.5513 -1.5042 -2.4460 9 6 6.2303 -2.1319 -3.4265 10 8 5.6280 -2.7445 -4.2870 11 6 7.7043 -2.0758 -3.4557 12 6 8.4002 -1.3730 -2.4696 13 6 9.7772 -1.3247 -2.5021 14 6 10.4763 -1.9711 -3.5089 15 6 9.8021 -2.6696 -4.4901 16 6 8.4153 -2.7329 -4.4706 17 8 7.7517 -3.4229 -5.4299 18 6 8.4876 -3.9282 -6.4402 19 1 9.5643 -3.8461 -6.4176 20 6 7.8620 -4.5536 -7.5085 21 7 6.5509 -4.6541 -7.5356 22 14 8.8817 -5.2544 -8.9079 23 1 9.8054 -6.2891 -8.3775 24 1 7.9814 -5.8664 -9.9181 25 1 9.6687 -4.1656 -9.5404 26 6 4.0175 -1.4602 0.0808 27 6 3.4307 -0.7095 1.2790 28 8 2.0065 -0.6744 1.1663 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5142 0.8897 31 1 -0.3634 0.5135 -0.8903 32 1 1.7148 -0.1842 -2.1399 33 1 1.6442 -1.7374 -1.2722 34 1 3.6896 -1.1243 -3.3340 35 1 3.7647 -2.5975 -2.3379 36 1 6.0317 -1.0152 -1.7597 37 1 7.8599 -0.8676 -1.6827 38 1 10.3140 -0.7805 -1.7392 39 1 11.5553 -1.9274 -3.5264 40 1 10.3541 -3.1704 -5.2717 41 1 6.1134 -5.0911 -8.2829 42 1 3.6612 -2.4903 0.0862 43 1 5.1058 -1.4499 0.1419 44 1 3.8192 0.3087 1.2958 45 1 3.7099 -1.2206 2.2004 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271558993.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:27:02 Heat of formation + Delta-G solvation = -118.308928 kcal Electronic energy + Delta-G solvation = -26601.582489 eV Core-core repulsion = 22776.387936 eV Total energy + Delta-G solvation = -3825.194553 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.35570 -40.60708 -39.67580 -38.02798 -36.70714 -34.35711 -34.13706 -33.57393 -31.99120 -30.57003 -29.27627 -27.56519 -27.07319 -24.62773 -24.23692 -23.13188 -22.28277 -21.58923 -21.05625 -19.85095 -19.22920 -17.86558 -17.31744 -17.08449 -16.78561 -16.44621 -16.27693 -16.00734 -15.81676 -15.61764 -15.42479 -15.30688 -14.97591 -14.81960 -14.28582 -14.15647 -13.77173 -13.55212 -13.47468 -13.14931 -13.10081 -12.96080 -12.78205 -12.69098 -12.50487 -12.35798 -12.15492 -12.05227 -11.94025 -11.61212 -11.43285 -11.20661 -10.82836 -10.65755 -10.38958 -10.11905 -9.78055 -9.03749 -8.44931 -6.16110 0.12370 0.72884 1.31628 1.44698 1.49661 2.09650 2.15636 2.25882 2.87487 2.89274 3.22531 3.46783 3.58441 3.68733 3.78953 3.96165 4.02429 4.08308 4.25621 4.28410 4.30571 4.39988 4.49739 4.53228 4.58641 4.62804 4.65883 4.75505 4.82272 4.86269 4.91108 4.98098 5.04721 5.07199 5.10095 5.13915 5.16740 5.31762 5.36720 5.48111 5.54369 5.61274 5.69755 5.95655 6.17265 6.35239 6.69394 6.94215 7.48345 7.80256 8.75465 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.016805 B = 0.002945 C = 0.002551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.752004 B = 9504.848556 C =10973.642425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.087 3.913 3 H 0.072 0.928 4 C -0.143 4.143 5 C -0.087 4.087 6 H 0.098 0.902 7 C 0.131 3.869 8 N -0.714 5.714 9 C 0.546 3.454 10 O -0.571 6.571 11 C -0.245 4.245 12 C -0.029 4.029 13 C -0.200 4.200 14 C -0.040 4.040 15 C -0.258 4.258 16 C 0.147 3.853 17 O -0.189 6.189 18 C -0.429 4.429 19 H 0.107 0.893 20 C -0.023 4.023 21 N -0.906 5.906 22 Si 1.022 2.978 23 H -0.254 1.254 24 H -0.273 1.273 25 H -0.254 1.254 26 C -0.151 4.151 27 C 0.063 3.937 28 O -0.402 6.402 29 H 0.054 0.946 30 H 0.067 0.933 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.061 0.939 34 H 0.048 0.952 35 H 0.042 0.958 36 H 0.411 0.589 37 H 0.161 0.839 38 H 0.165 0.835 39 H 0.154 0.846 40 H 0.123 0.877 41 H 0.271 0.729 42 H 0.056 0.944 43 H 0.088 0.912 44 H 0.068 0.932 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.937 12.735 18.046 22.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.030 3.970 3 H 0.090 0.910 4 C -0.182 4.182 5 C -0.106 4.106 6 H 0.116 0.884 7 C 0.007 3.993 8 N -0.370 5.370 9 C 0.336 3.664 10 O -0.450 6.450 11 C -0.250 4.250 12 C -0.048 4.048 13 C -0.218 4.218 14 C -0.058 4.058 15 C -0.278 4.278 16 C 0.092 3.908 17 O -0.092 6.092 18 C -0.505 4.505 19 H 0.124 0.876 20 C -0.222 4.222 21 N -0.542 5.542 22 Si 0.840 3.160 23 H -0.178 1.178 24 H -0.198 1.198 25 H -0.178 1.178 26 C -0.189 4.189 27 C -0.014 4.014 28 O -0.322 6.322 29 H 0.073 0.927 30 H 0.086 0.914 31 H 0.103 0.897 32 H 0.102 0.898 33 H 0.080 0.920 34 H 0.067 0.933 35 H 0.060 0.940 36 H 0.250 0.750 37 H 0.179 0.821 38 H 0.183 0.817 39 H 0.171 0.829 40 H 0.140 0.860 41 H 0.080 0.920 42 H 0.075 0.925 43 H 0.106 0.894 44 H 0.086 0.914 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -2.949 12.064 17.401 21.378 hybrid contribution 0.451 -0.617 -1.123 1.358 sum -2.498 11.447 16.278 20.056 Atomic orbital electron populations 1.21794 0.92401 1.02754 1.03302 1.22170 0.95684 0.95184 0.83980 0.91017 1.22227 0.94201 1.02090 0.99639 1.21370 0.96262 1.00051 0.92899 0.88372 1.21283 0.79596 0.99755 0.98631 1.45601 1.07013 1.55174 1.29200 1.18582 0.88005 0.78591 0.81248 1.90932 1.70953 1.43678 1.39473 1.19304 0.92040 1.11587 1.02045 1.21301 0.95176 0.93654 0.94619 1.21184 0.93434 1.05534 1.01668 1.21442 1.00964 0.91939 0.91498 1.21309 0.92614 1.09174 1.04658 1.20116 0.92244 0.89303 0.89131 1.84182 1.36180 1.58842 1.29973 1.22009 0.92112 1.37674 0.98677 0.87589 1.26773 0.97378 0.97044 1.00981 1.70324 1.10475 1.41213 1.32138 0.84623 0.77115 0.78839 0.75387 1.17782 1.19811 1.17780 1.22278 1.02126 0.99935 0.94522 1.22679 0.80074 1.00466 0.98158 1.87914 1.22233 1.78443 1.43593 0.92678 0.91415 0.89661 0.89769 0.92024 0.93336 0.93998 0.75030 0.82138 0.81713 0.82854 0.85954 0.92045 0.92498 0.89392 0.91371 0.87752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.56 71.98 0.69 -1.33 16 2 C 0.09 1.39 3.26 30.63 0.10 1.49 16 3 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 4 C -0.14 -2.60 4.71 30.69 0.14 -2.45 16 5 C -0.09 -1.64 2.31 -10.68 -0.02 -1.66 16 6 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 7 C 0.13 3.81 5.07 86.38 0.44 4.25 16 8 N -0.71 -22.25 5.27 -466.27 -2.46 -24.71 16 9 C 0.55 24.91 7.76 86.70 0.67 25.58 16 10 O -0.57 -34.23 15.17 16.89 0.26 -33.98 16 11 C -0.25 -10.62 5.89 -19.99 -0.12 -10.73 16 12 C -0.03 -0.86 9.53 22.52 0.21 -0.64 16 13 C -0.20 -5.19 10.02 22.25 0.22 -4.96 16 14 C -0.04 -1.24 10.03 22.30 0.22 -1.02 16 15 C -0.26 -11.04 9.16 22.36 0.20 -10.84 16 16 C 0.15 7.63 6.66 22.91 0.15 7.78 16 17 O -0.19 -12.16 7.84 0.75 0.01 -12.16 16 18 C -0.43 -26.17 9.49 67.93 0.64 -25.53 16 19 H 0.11 5.78 5.21 -2.91 -0.02 5.76 16 20 C -0.02 -1.35 5.49 84.85 0.47 -0.89 16 21 N -0.91 -59.80 13.67 21.62 0.30 -59.50 16 22 Si 1.02 44.51 29.55 68.60 2.03 46.54 16 23 H -0.25 -10.24 7.11 99.48 0.71 -9.53 16 24 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 25 H -0.25 -10.23 7.11 99.48 0.71 -9.53 16 26 C -0.15 -2.57 5.26 30.69 0.16 -2.41 16 27 C 0.06 0.90 6.84 72.01 0.49 1.40 16 28 O -0.40 -7.71 10.41 -148.98 -1.55 -9.26 16 29 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 32 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.04 1.42 8.14 -2.38 -0.02 1.40 16 36 H 0.41 8.99 5.74 -92.71 -0.53 8.46 16 37 H 0.16 3.04 6.40 -2.91 -0.02 3.02 16 38 H 0.17 2.69 8.06 -2.91 -0.02 2.67 16 39 H 0.15 3.44 8.06 -2.91 -0.02 3.41 16 40 H 0.12 5.31 5.64 -2.91 -0.02 5.30 16 41 H 0.27 16.38 8.31 -92.71 -0.77 15.61 16 42 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 43 H 0.09 1.26 7.31 -2.38 -0.02 1.24 16 44 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 45 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -89.39 366.69 3.73 -85.65 By element: Atomic # 1 Polarization: 28.88 SS G_CDS: 0.47 Total: 29.35 kcal Atomic # 6 Polarization: -26.63 SS G_CDS: 4.69 Total: -21.95 kcal Atomic # 7 Polarization: -82.05 SS G_CDS: -2.16 Total: -84.21 kcal Atomic # 8 Polarization: -54.10 SS G_CDS: -1.29 Total: -55.39 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -89.39 3.73 -85.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271558993.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.655 kcal (2) G-P(sol) polarization free energy of solvation -89.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds