Wall clock time and date at job start Tue Mar 31 2020 13:27:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09008 * 109.48009 * 2 1 4 4 C 1.53094 * 109.48451 * 239.97087 * 2 1 3 5 5 C 1.53184 * 109.15973 * 297.62569 * 4 2 1 6 6 H 1.08996 * 109.61536 * 62.92868 * 5 4 2 7 7 C 1.52992 * 109.54428 * 183.15167 * 5 4 2 8 8 N 1.46503 * 109.47442 * 184.55602 * 7 5 4 9 9 C 1.34775 * 120.00070 * 180.02562 * 8 7 5 10 10 O 1.21591 * 120.00332 * 359.97438 * 9 8 7 11 11 C 1.47535 * 119.99627 * 180.02562 * 9 8 7 12 12 C 1.39670 * 120.20003 * 0.27350 * 11 9 8 13 13 C 1.37823 * 119.91931 * 180.27487 * 12 11 9 14 14 C 1.38580 * 120.32199 * 359.72383 * 13 12 11 15 15 C 1.38018 * 120.40254 * 359.97438 * 14 13 12 16 16 C 1.38837 * 120.07444 * 0.02562 * 15 14 13 17 17 O 1.35522 * 120.16374 * 179.97438 * 16 15 14 18 18 C 1.34817 * 116.99904 * 5.58697 * 17 16 15 19 19 H 1.08000 * 119.99767 * 354.92581 * 18 17 16 20 20 C 1.38688 * 120.00073 * 174.65558 * 18 17 16 21 21 N 1.31522 * 120.00481 * 180.27286 * 20 18 17 22 22 Si 1.86805 * 119.99907 * 0.27320 * 20 18 17 23 23 H 1.48498 * 109.47102 * 90.00383 * 22 20 18 24 24 H 1.48501 * 109.46982 * 210.00188 * 22 20 18 25 25 H 1.48503 * 109.47164 * 330.00315 * 22 20 18 26 26 C 1.53181 * 109.03597 * 303.02001 * 5 4 2 27 27 C 1.53096 * 109.16326 * 56.97772 * 26 5 4 28 28 O 1.42895 * 109.41469 * 302.39344 * 27 26 5 29 29 H 1.09001 * 109.47129 * 299.97719 * 1 2 3 30 30 H 1.09006 * 109.47222 * 59.97892 * 1 2 3 31 31 H 1.09001 * 109.47167 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.52256 * 177.72031 * 4 2 1 33 33 H 1.08998 * 109.52508 * 57.52441 * 4 2 1 34 34 H 1.08995 * 109.47276 * 64.55422 * 7 5 4 35 35 H 1.09004 * 109.46910 * 304.55296 * 7 5 4 36 36 H 0.97001 * 119.99294 * 359.97438 * 8 7 5 37 37 H 1.07998 * 120.03993 * 359.97438 * 12 11 9 38 38 H 1.07997 * 119.84355 * 179.69603 * 13 12 11 39 39 H 1.08005 * 119.79724 * 180.02562 * 14 13 12 40 40 H 1.08003 * 119.96399 * 180.02562 * 15 14 13 41 41 H 0.96999 * 120.00263 * 179.97438 * 21 20 18 42 42 H 1.08997 * 109.52340 * 176.88944 * 26 5 4 43 43 H 1.09004 * 109.51695 * 297.07384 * 26 5 4 44 44 H 1.08996 * 109.47731 * 62.38027 * 27 26 5 45 45 H 1.09002 * 109.47410 * 182.41082 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0277 0.0000 4 6 2.0406 -0.7223 -1.2495 5 6 1.5758 -2.1814 -1.2121 6 1 0.4869 -2.2194 -1.2415 7 6 2.1468 -2.9316 -2.4170 8 7 1.6146 -4.2963 -2.4397 9 6 1.9822 -5.1468 -3.4185 10 8 2.7552 -4.7813 -4.2829 11 6 1.4457 -6.5210 -3.4415 12 6 0.5523 -6.9430 -2.4544 13 6 0.0591 -8.2298 -2.4783 14 6 0.4409 -9.1068 -3.4811 15 6 1.3181 -8.7018 -4.4666 16 6 1.8251 -7.4094 -4.4586 17 8 2.6870 -7.0099 -5.4251 18 6 2.9231 -7.8763 -6.4307 19 1 2.4988 -8.8690 -6.3991 20 6 3.7063 -7.4910 -7.5085 21 7 3.9323 -8.3343 -8.4921 22 14 4.4403 -5.7740 -7.5632 23 1 5.7763 -5.7860 -6.9151 24 1 4.5795 -5.3400 -8.9765 25 1 3.5484 -4.8312 -6.8413 26 6 2.0765 -2.8322 0.0811 27 6 1.5645 -2.0283 1.2792 28 8 2.0066 -0.6741 1.1664 29 1 -0.3633 0.5135 0.8902 30 1 -0.3634 0.5142 -0.8898 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1298 -0.6874 -1.2708 33 1 1.6421 -0.2359 -2.1399 34 1 3.2336 -2.9666 -2.3415 35 1 1.8628 -2.4156 -3.3342 36 1 0.9982 -4.5880 -1.7498 37 1 0.2520 -6.2635 -1.6706 38 1 -0.6278 -8.5564 -1.7117 39 1 0.0488 -10.1132 -3.4919 40 1 1.6105 -9.3911 -5.2450 41 1 4.4798 -8.0646 -9.2461 42 1 1.7038 -3.8546 0.1423 43 1 3.1665 -2.8399 0.0865 44 1 0.4750 -2.0549 1.2959 45 1 1.9531 -2.4620 2.2006 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271558994.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:27:06 Heat of formation + Delta-G solvation = -91.319214 kcal Electronic energy + Delta-G solvation = -26919.346021 eV Core-core repulsion = 23095.321830 eV Total energy + Delta-G solvation = -3824.024191 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.31860 -39.67028 -38.25384 -36.54324 -35.60289 -33.14332 -32.46369 -32.30834 -30.64884 -29.22024 -28.82894 -26.44718 -25.25482 -23.80280 -23.29962 -22.10607 -21.16499 -20.17922 -19.49599 -17.96753 -17.89327 -16.70940 -16.36756 -16.18764 -15.84816 -15.30840 -14.85677 -14.72082 -14.50376 -14.33309 -14.11727 -13.87044 -13.76439 -13.58325 -13.26276 -12.80177 -12.77651 -12.37890 -12.32972 -12.19189 -12.16436 -12.06246 -11.52604 -11.42107 -11.28818 -11.17748 -10.87040 -10.84686 -10.73809 -10.35381 -10.03347 -9.74756 -9.62838 -9.06589 -8.89953 -8.74341 -8.39457 -7.49441 -6.47946 -4.13292 1.56028 2.16928 3.31965 3.36759 3.48283 3.56753 3.59099 3.66703 4.35247 4.39555 4.41688 4.46242 4.51670 4.65132 4.71613 4.78712 4.99552 5.06832 5.08508 5.12110 5.14857 5.25960 5.35919 5.37895 5.42970 5.51414 5.58060 5.62103 5.70383 5.74235 5.80941 5.85827 5.88455 6.00061 6.02077 6.13848 6.35765 6.53360 6.76480 6.81544 6.94151 6.99188 7.13067 7.46414 7.66386 7.93046 7.94505 8.84948 8.89041 9.50588 10.57104 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.015232 B = 0.003400 C = 0.002872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1837.839185 B = 8233.659203 C = 9748.339164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.087 3.913 3 H 0.102 0.898 4 C -0.143 4.143 5 C -0.101 4.101 6 H 0.080 0.920 7 C 0.129 3.871 8 N -0.741 5.741 9 C 0.559 3.441 10 O -0.518 6.518 11 C -0.227 4.227 12 C -0.041 4.041 13 C -0.221 4.221 14 C -0.051 4.051 15 C -0.227 4.227 16 C 0.201 3.799 17 O -0.165 6.165 18 C -0.397 4.397 19 H 0.108 0.892 20 C 0.072 3.928 21 N -0.870 5.870 22 Si 0.898 3.102 23 H -0.274 1.274 24 H -0.286 1.286 25 H -0.235 1.235 26 C -0.152 4.152 27 C 0.057 3.943 28 O -0.378 6.378 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.393 0.607 37 H 0.112 0.888 38 H 0.112 0.888 39 H 0.114 0.886 40 H 0.138 0.862 41 H 0.282 0.718 42 H 0.075 0.925 43 H 0.075 0.925 44 H 0.053 0.947 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.328 12.052 18.113 23.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.030 3.970 3 H 0.120 0.880 4 C -0.181 4.181 5 C -0.120 4.120 6 H 0.098 0.902 7 C 0.005 3.995 8 N -0.396 5.396 9 C 0.349 3.651 10 O -0.393 6.393 11 C -0.231 4.231 12 C -0.060 4.060 13 C -0.240 4.240 14 C -0.070 4.070 15 C -0.246 4.246 16 C 0.143 3.857 17 O -0.065 6.065 18 C -0.472 4.472 19 H 0.126 0.874 20 C -0.134 4.134 21 N -0.505 5.505 22 Si 0.722 3.278 23 H -0.200 1.200 24 H -0.212 1.212 25 H -0.158 1.158 26 C -0.190 4.190 27 C -0.019 4.019 28 O -0.297 6.297 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.095 0.905 33 H 0.096 0.904 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.227 0.773 37 H 0.130 0.870 38 H 0.130 0.870 39 H 0.132 0.868 40 H 0.156 0.844 41 H 0.092 0.908 42 H 0.093 0.907 43 H 0.094 0.906 44 H 0.071 0.929 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -7.361 12.593 17.301 22.629 hybrid contribution -0.180 0.039 -0.098 0.208 sum -7.541 12.632 17.203 22.636 Atomic orbital electron populations 1.22472 0.96415 1.02881 1.02722 1.22160 0.93443 0.96372 0.85070 0.88025 1.22174 1.02339 0.94931 0.98648 1.21463 1.00878 0.95011 0.94625 0.90216 1.21240 0.98721 0.82232 0.97265 1.45875 1.50612 1.12748 1.30384 1.18202 0.81064 0.84866 0.80931 1.90864 1.34298 1.77386 1.36788 1.18867 1.08991 0.93973 1.01314 1.20740 0.94115 0.95694 0.95447 1.20534 1.06814 0.94662 1.02029 1.20966 0.94596 0.98455 0.92941 1.21291 1.03726 0.96774 1.02795 1.19030 0.87216 0.91314 0.88109 1.83782 1.50895 1.42544 1.29313 1.20930 1.32934 0.96074 0.97216 0.87447 1.24493 0.95683 0.99761 0.93412 1.69638 1.36557 1.35888 1.08465 0.86236 0.80799 0.83797 0.76964 1.19952 1.21248 1.15793 1.22273 1.02513 0.99669 0.94498 1.22589 0.98726 0.82265 0.98347 1.87987 1.73749 1.24813 1.43181 0.91925 0.91372 0.91748 0.90545 0.90435 0.91680 0.91692 0.77262 0.86985 0.87023 0.86826 0.84418 0.90818 0.90690 0.90621 0.92880 0.88932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.25 8.65 37.16 0.32 -0.93 16 2 C 0.09 0.69 3.91 -26.68 -0.10 0.58 16 3 H 0.10 0.71 8.14 -51.92 -0.42 0.28 16 4 C -0.14 -1.18 4.93 -26.59 -0.13 -1.32 16 5 C -0.10 -0.91 2.00 -90.44 -0.18 -1.09 16 6 H 0.08 0.66 6.62 -51.93 -0.34 0.31 16 7 C 0.13 1.64 5.07 -4.04 -0.02 1.62 16 8 N -0.74 -10.62 5.26 -61.35 -0.32 -10.94 16 9 C 0.56 11.25 7.76 -12.47 -0.10 11.16 16 10 O -0.52 -12.91 14.99 -16.57 -0.25 -13.15 16 11 C -0.23 -4.57 5.89 -104.81 -0.62 -5.18 16 12 C -0.04 -0.64 9.53 -39.20 -0.37 -1.02 16 13 C -0.22 -3.38 10.03 -39.61 -0.40 -3.77 16 14 C -0.05 -0.86 10.03 -39.54 -0.40 -1.26 16 15 C -0.23 -4.77 9.16 -39.44 -0.36 -5.13 16 16 C 0.20 4.74 6.66 -38.60 -0.26 4.49 16 17 O -0.17 -4.56 6.67 -21.07 -0.14 -4.70 16 18 C -0.40 -11.37 9.95 30.90 0.31 -11.06 16 19 H 0.11 3.06 5.44 -52.49 -0.29 2.78 16 20 C 0.07 2.08 5.49 -17.52 -0.10 1.98 16 21 N -0.87 -25.35 13.96 55.48 0.77 -24.58 16 22 Si 0.90 23.20 28.62 -169.99 -4.86 18.34 16 23 H -0.27 -7.05 7.11 56.52 0.40 -6.65 16 24 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 25 H -0.24 -6.43 6.93 56.52 0.39 -6.04 16 26 C -0.15 -1.29 5.25 -26.59 -0.14 -1.43 16 27 C 0.06 0.45 6.52 37.21 0.24 0.69 16 28 O -0.38 -3.67 10.60 -35.23 -0.37 -4.04 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.43 4.98 -51.93 -0.26 0.17 16 32 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 35 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.39 4.39 5.71 -40.82 -0.23 4.16 16 37 H 0.11 1.30 6.40 -52.49 -0.34 0.96 16 38 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 39 H 0.11 1.59 8.06 -52.48 -0.42 1.16 16 40 H 0.14 3.01 5.64 -52.48 -0.30 2.71 16 41 H 0.28 7.60 8.31 -40.82 -0.34 7.26 16 42 H 0.07 0.59 7.28 -51.93 -0.38 0.21 16 43 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.05 0.37 6.34 -51.93 -0.33 0.04 16 45 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 358.19 15.07 5.40 5.40 Total: -1.00 -33.47 358.19 -8.33 -41.81 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -6.26 Total: 3.54 kcal Atomic # 6 Polarization: -9.37 SS G_CDS: -2.30 Total: -11.67 kcal Atomic # 7 Polarization: -35.98 SS G_CDS: 0.45 Total: -35.52 kcal Atomic # 8 Polarization: -21.13 SS G_CDS: -0.76 Total: -21.89 kcal Atomic # 14 Polarization: 23.20 SS G_CDS: -4.86 Total: 18.34 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.47 -8.33 -41.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271558994.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.511 kcal (2) G-P(sol) polarization free energy of solvation -33.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds