Wall clock time and date at job start Tue Mar 31 2020 13:27:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09008 * 109.48009 * 2 1 4 4 C 1.53094 * 109.48451 * 239.97087 * 2 1 3 5 5 C 1.53184 * 109.15973 * 297.62569 * 4 2 1 6 6 H 1.08996 * 109.61536 * 62.92868 * 5 4 2 7 7 C 1.52992 * 109.54428 * 183.15167 * 5 4 2 8 8 N 1.46503 * 109.47442 * 184.55602 * 7 5 4 9 9 C 1.34775 * 120.00070 * 180.02562 * 8 7 5 10 10 O 1.21591 * 120.00332 * 359.97438 * 9 8 7 11 11 C 1.47535 * 119.99627 * 180.02562 * 9 8 7 12 12 C 1.39670 * 120.20003 * 0.27350 * 11 9 8 13 13 C 1.37823 * 119.91931 * 180.27487 * 12 11 9 14 14 C 1.38580 * 120.32199 * 359.72383 * 13 12 11 15 15 C 1.38018 * 120.40254 * 359.97438 * 14 13 12 16 16 C 1.38837 * 120.07444 * 0.02562 * 15 14 13 17 17 O 1.35522 * 120.16374 * 179.97438 * 16 15 14 18 18 C 1.34817 * 116.99904 * 5.58697 * 17 16 15 19 19 H 1.08000 * 119.99767 * 354.92581 * 18 17 16 20 20 C 1.38688 * 120.00073 * 174.65558 * 18 17 16 21 21 N 1.31522 * 120.00481 * 180.27286 * 20 18 17 22 22 Si 1.86805 * 119.99907 * 0.27320 * 20 18 17 23 23 H 1.48498 * 109.47102 * 90.00383 * 22 20 18 24 24 H 1.48501 * 109.46982 * 210.00188 * 22 20 18 25 25 H 1.48503 * 109.47164 * 330.00315 * 22 20 18 26 26 C 1.53181 * 109.03597 * 303.02001 * 5 4 2 27 27 C 1.53096 * 109.16326 * 56.97772 * 26 5 4 28 28 O 1.42895 * 109.41469 * 302.39344 * 27 26 5 29 29 H 1.09001 * 109.47129 * 299.97719 * 1 2 3 30 30 H 1.09006 * 109.47222 * 59.97892 * 1 2 3 31 31 H 1.09001 * 109.47167 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.52256 * 177.72031 * 4 2 1 33 33 H 1.08998 * 109.52508 * 57.52441 * 4 2 1 34 34 H 1.08995 * 109.47276 * 64.55422 * 7 5 4 35 35 H 1.09004 * 109.46910 * 304.55296 * 7 5 4 36 36 H 0.97001 * 119.99294 * 359.97438 * 8 7 5 37 37 H 1.07998 * 120.03993 * 359.97438 * 12 11 9 38 38 H 1.07997 * 119.84355 * 179.69603 * 13 12 11 39 39 H 1.08005 * 119.79724 * 180.02562 * 14 13 12 40 40 H 1.08003 * 119.96399 * 180.02562 * 15 14 13 41 41 H 0.96999 * 120.00263 * 179.97438 * 21 20 18 42 42 H 1.08997 * 109.52340 * 176.88944 * 26 5 4 43 43 H 1.09004 * 109.51695 * 297.07384 * 26 5 4 44 44 H 1.08996 * 109.47731 * 62.38027 * 27 26 5 45 45 H 1.09002 * 109.47410 * 182.41082 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0277 0.0000 4 6 2.0406 -0.7223 -1.2495 5 6 1.5758 -2.1814 -1.2121 6 1 0.4869 -2.2194 -1.2415 7 6 2.1468 -2.9316 -2.4170 8 7 1.6146 -4.2963 -2.4397 9 6 1.9822 -5.1468 -3.4185 10 8 2.7552 -4.7813 -4.2829 11 6 1.4457 -6.5210 -3.4415 12 6 0.5523 -6.9430 -2.4544 13 6 0.0591 -8.2298 -2.4783 14 6 0.4409 -9.1068 -3.4811 15 6 1.3181 -8.7018 -4.4666 16 6 1.8251 -7.4094 -4.4586 17 8 2.6870 -7.0099 -5.4251 18 6 2.9231 -7.8763 -6.4307 19 1 2.4988 -8.8690 -6.3991 20 6 3.7063 -7.4910 -7.5085 21 7 3.9323 -8.3343 -8.4921 22 14 4.4403 -5.7740 -7.5632 23 1 5.7763 -5.7860 -6.9151 24 1 4.5795 -5.3400 -8.9765 25 1 3.5484 -4.8312 -6.8413 26 6 2.0765 -2.8322 0.0811 27 6 1.5645 -2.0283 1.2792 28 8 2.0066 -0.6741 1.1664 29 1 -0.3633 0.5135 0.8902 30 1 -0.3634 0.5142 -0.8898 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1298 -0.6874 -1.2708 33 1 1.6421 -0.2359 -2.1399 34 1 3.2336 -2.9666 -2.3415 35 1 1.8628 -2.4156 -3.3342 36 1 0.9982 -4.5880 -1.7498 37 1 0.2520 -6.2635 -1.6706 38 1 -0.6278 -8.5564 -1.7117 39 1 0.0488 -10.1132 -3.4919 40 1 1.6105 -9.3911 -5.2450 41 1 4.4798 -8.0646 -9.2461 42 1 1.7038 -3.8546 0.1423 43 1 3.1665 -2.8399 0.0865 44 1 0.4750 -2.0549 1.2959 45 1 1.9531 -2.4620 2.2006 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271558994.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:27:05 Heat of formation + Delta-G solvation = -113.685861 kcal Electronic energy + Delta-G solvation = -26920.315912 eV Core-core repulsion = 23095.321830 eV Total energy + Delta-G solvation = -3824.994082 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.48138 -40.84400 -39.80926 -38.15999 -36.71343 -34.53824 -34.19995 -33.04450 -32.03500 -30.79768 -29.56831 -27.58516 -27.02457 -24.66056 -24.45473 -23.23650 -22.56762 -21.63678 -20.23018 -19.80174 -19.47058 -18.08202 -17.31717 -17.15682 -16.85955 -16.59827 -16.31170 -15.95538 -15.84226 -15.57148 -15.48688 -15.42004 -15.21368 -14.63668 -14.32794 -14.15244 -14.12573 -14.02126 -13.59781 -13.21064 -13.07634 -12.98184 -12.84543 -12.66129 -12.59973 -12.38408 -12.13707 -12.02146 -11.92488 -11.58571 -11.51394 -11.00769 -10.98172 -10.71754 -10.38441 -10.15830 -9.82386 -9.14909 -8.58917 -6.27812 0.05281 0.64786 1.23970 1.28689 1.57700 2.02727 2.21492 2.28952 2.74918 2.98618 3.01587 3.17218 3.61050 3.72544 3.75407 3.90780 4.02123 4.04102 4.19359 4.25885 4.37098 4.43031 4.45313 4.47441 4.53025 4.59359 4.64670 4.74287 4.78580 4.80672 4.88362 5.00024 5.03154 5.06913 5.14782 5.20380 5.27364 5.28511 5.42411 5.47205 5.52098 5.61859 5.69318 5.83259 6.15598 6.34942 6.63658 6.78354 7.39509 7.58346 8.51578 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.015232 B = 0.003400 C = 0.002872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1837.839185 B = 8233.659203 C = 9748.339164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.086 3.914 3 H 0.108 0.892 4 C -0.143 4.143 5 C -0.088 4.088 6 H 0.099 0.901 7 C 0.129 3.871 8 N -0.712 5.712 9 C 0.552 3.448 10 O -0.575 6.575 11 C -0.234 4.234 12 C -0.029 4.029 13 C -0.188 4.188 14 C -0.043 4.043 15 C -0.252 4.252 16 C 0.160 3.840 17 O -0.210 6.210 18 C -0.403 4.403 19 H 0.092 0.908 20 C 0.026 3.974 21 N -0.912 5.912 22 Si 0.953 3.047 23 H -0.276 1.276 24 H -0.266 1.266 25 H -0.264 1.264 26 C -0.151 4.151 27 C 0.056 3.944 28 O -0.399 6.399 29 H 0.064 0.936 30 H 0.075 0.925 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.084 0.916 34 H 0.046 0.954 35 H 0.052 0.948 36 H 0.413 0.587 37 H 0.167 0.833 38 H 0.168 0.832 39 H 0.151 0.849 40 H 0.114 0.886 41 H 0.286 0.714 42 H 0.088 0.912 43 H 0.057 0.943 44 H 0.070 0.930 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.540 12.709 22.289 28.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.029 3.971 3 H 0.125 0.875 4 C -0.181 4.181 5 C -0.107 4.107 6 H 0.117 0.883 7 C 0.005 3.995 8 N -0.367 5.367 9 C 0.342 3.658 10 O -0.455 6.455 11 C -0.239 4.239 12 C -0.048 4.048 13 C -0.207 4.207 14 C -0.061 4.061 15 C -0.271 4.271 16 C 0.107 3.893 17 O -0.114 6.114 18 C -0.479 4.479 19 H 0.109 0.891 20 C -0.174 4.174 21 N -0.552 5.552 22 Si 0.777 3.223 23 H -0.202 1.202 24 H -0.191 1.191 25 H -0.188 1.188 26 C -0.188 4.188 27 C -0.020 4.020 28 O -0.319 6.319 29 H 0.084 0.916 30 H 0.094 0.906 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.103 0.897 34 H 0.065 0.935 35 H 0.071 0.929 36 H 0.251 0.749 37 H 0.184 0.816 38 H 0.186 0.814 39 H 0.168 0.832 40 H 0.132 0.868 41 H 0.095 0.905 42 H 0.106 0.894 43 H 0.076 0.924 44 H 0.088 0.912 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -10.632 13.255 21.566 27.456 hybrid contribution 0.518 -0.191 -0.945 1.094 sum -10.114 13.064 20.621 26.424 Atomic orbital electron populations 1.22443 0.95127 1.03258 1.03300 1.22244 0.94432 0.96407 0.84058 0.87451 1.22179 1.01666 0.94719 0.99554 1.21394 1.01653 0.94736 0.92916 0.88287 1.21340 0.97933 0.81461 0.98761 1.45612 1.49596 1.12548 1.28961 1.18427 0.80538 0.85571 0.81249 1.90850 1.36938 1.78396 1.39326 1.19307 1.09481 0.93717 1.01349 1.21350 0.91599 0.97070 0.94749 1.21245 1.04810 0.93403 1.01195 1.21452 0.92438 1.00642 0.91549 1.21334 1.05735 0.95794 1.04215 1.19793 0.87872 0.93212 0.88397 1.83770 1.54388 1.42692 1.30573 1.20900 1.32903 0.95917 0.98162 0.89069 1.25038 0.96636 1.02173 0.93569 1.69682 1.38953 1.37089 1.09475 0.85443 0.79203 0.80350 0.77284 1.20161 1.19067 1.18790 1.22274 1.01539 1.00526 0.94494 1.22697 0.99706 0.81370 0.98205 1.87968 1.74363 1.25729 1.43821 0.91646 0.90568 0.91388 0.91851 0.89718 0.93523 0.92934 0.74890 0.81578 0.81443 0.83165 0.86815 0.90452 0.89374 0.92367 0.91214 0.88054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.85 8.65 71.98 0.62 -1.23 16 2 C 0.09 1.15 3.91 30.63 0.12 1.27 16 3 H 0.11 1.29 8.14 -2.38 -0.02 1.27 16 4 C -0.14 -2.14 4.93 30.69 0.15 -1.99 16 5 C -0.09 -1.36 2.00 -10.67 -0.02 -1.38 16 6 H 0.10 1.20 6.62 -2.39 -0.02 1.19 16 7 C 0.13 3.14 5.07 86.38 0.44 3.58 16 8 N -0.71 -18.78 5.26 -466.28 -2.45 -21.23 16 9 C 0.55 22.02 7.76 86.70 0.67 22.69 16 10 O -0.58 -29.90 14.99 16.90 0.25 -29.65 16 11 C -0.23 -9.09 5.89 -19.99 -0.12 -9.21 16 12 C -0.03 -0.76 9.53 22.52 0.21 -0.54 16 13 C -0.19 -4.47 10.03 22.25 0.22 -4.25 16 14 C -0.04 -1.28 10.03 22.30 0.22 -1.06 16 15 C -0.25 -10.68 9.16 22.36 0.20 -10.48 16 16 C 0.16 7.77 6.66 22.91 0.15 7.92 16 17 O -0.21 -12.33 6.67 0.79 0.01 -12.32 16 18 C -0.40 -24.80 9.95 67.93 0.68 -24.12 16 19 H 0.09 5.67 5.44 -2.91 -0.02 5.66 16 20 C 0.03 1.60 5.49 84.85 0.47 2.06 16 21 N -0.91 -56.25 13.96 21.62 0.30 -55.95 16 22 Si 0.95 51.20 28.62 68.60 1.96 53.17 16 23 H -0.28 -14.60 7.11 99.48 0.71 -13.90 16 24 H -0.27 -13.07 7.11 99.48 0.71 -12.37 16 25 H -0.26 -15.24 6.93 99.48 0.69 -14.56 16 26 C -0.15 -2.13 5.25 30.69 0.16 -1.97 16 27 C 0.06 0.71 6.52 72.01 0.47 1.18 16 28 O -0.40 -6.82 10.60 -148.98 -1.58 -8.39 16 29 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.08 0.66 8.14 -2.38 -0.02 0.64 16 31 H 0.07 0.63 4.98 -2.39 -0.01 0.62 16 32 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.08 1.14 8.14 -2.39 -0.02 1.13 16 34 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.05 1.44 8.14 -2.38 -0.02 1.42 16 36 H 0.41 7.25 5.71 -92.71 -0.53 6.72 16 37 H 0.17 2.50 6.40 -2.91 -0.02 2.48 16 38 H 0.17 2.38 8.06 -2.91 -0.02 2.36 16 39 H 0.15 3.44 8.06 -2.91 -0.02 3.41 16 40 H 0.11 5.31 5.64 -2.91 -0.02 5.30 16 41 H 0.29 16.22 8.31 -92.71 -0.77 15.45 16 42 H 0.09 0.99 7.28 -2.39 -0.02 0.98 16 43 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 44 H 0.07 0.65 6.34 -2.39 -0.02 0.64 16 45 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 Total: -1.00 -81.96 358.19 3.62 -78.34 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: 0.47 Total: 13.55 kcal Atomic # 6 Polarization: -22.18 SS G_CDS: 4.66 Total: -17.52 kcal Atomic # 7 Polarization: -75.02 SS G_CDS: -2.15 Total: -77.18 kcal Atomic # 8 Polarization: -49.04 SS G_CDS: -1.32 Total: -50.36 kcal Atomic # 14 Polarization: 51.20 SS G_CDS: 1.96 Total: 53.17 kcal Total: -81.96 3.62 -78.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271558994.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.344 kcal (2) G-P(sol) polarization free energy of solvation -81.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds