Wall clock time and date at job start Tue Mar 31 2020 13:27:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.49443 * 2 1 4 4 C 1.53094 * 109.48210 * 120.03357 * 2 1 3 5 5 C 1.53175 * 109.16475 * 177.59301 * 4 2 1 6 6 H 1.09000 * 109.62029 * 62.92120 * 5 4 2 7 7 C 1.52992 * 109.54577 * 183.15054 * 5 4 2 8 8 N 1.46501 * 109.47340 * 184.55473 * 7 5 4 9 9 C 1.34775 * 120.00200 * 179.97438 * 8 7 5 10 10 O 1.21601 * 120.00004 * 359.97438 * 9 8 7 11 11 C 1.47538 * 120.00277 * 179.97438 * 9 8 7 12 12 C 1.39667 * 120.19282 * 359.97438 * 11 9 8 13 13 C 1.37827 * 119.91473 * 180.02562 * 12 11 9 14 14 C 1.38577 * 120.32805 * 359.97438 * 13 12 11 15 15 C 1.38030 * 120.39742 * 359.74034 * 14 13 12 16 16 C 1.38832 * 120.07183 * 0.52004 * 15 14 13 17 17 O 1.35518 * 120.16282 * 179.76564 * 16 15 14 18 18 C 1.34819 * 116.99873 * 5.60193 * 17 16 15 19 19 H 1.08001 * 119.99462 * 354.94186 * 18 17 16 20 20 C 1.38700 * 120.00259 * 174.94889 * 18 17 16 21 21 N 1.31518 * 120.00151 * 179.97438 * 20 18 17 22 22 Si 1.86797 * 119.99709 * 359.72142 * 20 18 17 23 23 H 1.48498 * 109.47086 * 270.27665 * 22 20 18 24 24 H 1.48506 * 109.47310 * 30.27564 * 22 20 18 25 25 H 1.48500 * 109.46881 * 150.27621 * 22 20 18 26 26 C 1.53182 * 109.03388 * 303.01539 * 5 4 2 27 27 C 1.53095 * 109.16337 * 56.98208 * 26 5 4 28 28 O 1.42903 * 109.41312 * 302.39192 * 27 26 5 29 29 H 1.09007 * 109.47031 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46992 * 300.02778 * 1 2 3 31 31 H 1.08995 * 109.47448 * 60.02910 * 1 2 3 32 32 H 1.08996 * 109.52640 * 57.68052 * 4 2 1 33 33 H 1.08998 * 109.52115 * 297.49415 * 4 2 1 34 34 H 1.09000 * 109.47116 * 64.55478 * 7 5 4 35 35 H 1.09005 * 109.47188 * 304.55123 * 7 5 4 36 36 H 0.96998 * 119.99711 * 359.97438 * 8 7 5 37 37 H 1.08001 * 120.04202 * 359.97438 * 12 11 9 38 38 H 1.08003 * 119.83889 * 179.97438 * 13 12 11 39 39 H 1.07995 * 119.79894 * 180.02562 * 14 13 12 40 40 H 1.08001 * 119.96041 * 180.27424 * 15 14 13 41 41 H 0.96997 * 119.99903 * 179.72108 * 21 20 18 42 42 H 1.09008 * 109.51972 * 176.88455 * 26 5 4 43 43 H 1.08992 * 109.52227 * 297.07433 * 26 5 4 44 44 H 1.09000 * 109.48266 * 62.37300 * 27 26 5 45 45 H 1.09001 * 109.48224 * 182.40729 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0406 -0.7224 1.2495 5 6 3.5711 -0.7709 1.2121 6 1 3.9703 0.2429 1.2414 7 6 4.0878 -1.5595 2.4170 8 7 5.5519 -1.5131 2.4397 9 6 6.2310 -2.1425 3.4191 10 8 5.6284 -2.7485 4.2842 11 6 7.7055 -2.0962 3.4417 12 6 8.4017 -1.4018 2.4498 13 6 9.7791 -1.3627 2.4762 14 6 10.4784 -2.0091 3.4830 15 6 9.8035 -2.6943 4.4731 16 6 8.4163 -2.7489 4.4596 17 8 7.7521 -3.4252 5.4281 18 6 8.4887 -3.9253 6.4404 19 1 9.5657 -3.8502 6.4129 20 6 7.8634 -4.5365 7.5171 21 7 8.5820 -5.0249 8.5044 22 14 6.0001 -4.6597 7.5681 23 1 5.4428 -3.4574 8.2381 24 1 5.4715 -4.7441 6.1829 25 1 5.6050 -5.8754 8.3238 26 6 4.0176 -1.4601 -0.0810 27 6 3.4307 -0.7093 -1.2792 28 8 2.0065 -0.6742 -1.1664 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5143 0.8897 31 1 -0.3634 0.5133 -0.8902 32 1 1.6443 -1.7375 1.2709 33 1 1.7149 -0.1845 2.1398 34 1 3.7583 -2.5958 2.3415 35 1 3.6961 -1.1196 3.3343 36 1 6.0325 -1.0294 1.7499 37 1 7.8614 -0.8967 1.6628 38 1 10.3163 -0.8257 1.7083 39 1 11.5576 -1.9726 3.4955 40 1 10.3554 -3.1918 5.2568 41 1 8.1444 -5.4487 9.2592 42 1 5.1059 -1.4498 -0.1422 43 1 3.6613 -2.4902 -0.0865 44 1 3.8192 0.3090 -1.2959 45 1 3.7099 -1.2203 -2.2006 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271558996.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:27:11 Heat of formation + Delta-G solvation = -94.820761 kcal Electronic energy + Delta-G solvation = -26726.222507 eV Core-core repulsion = 22902.046477 eV Total energy + Delta-G solvation = -3824.176030 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.12596 -39.60017 -38.24388 -36.54342 -35.62042 -33.23208 -32.74536 -32.45732 -30.64015 -29.21929 -28.51827 -26.40795 -25.25270 -23.72971 -23.11931 -21.78305 -21.13093 -20.52308 -19.99845 -17.93299 -17.84706 -16.63113 -16.46201 -16.02286 -15.90469 -15.28321 -14.86341 -14.76537 -14.41762 -14.30478 -14.18730 -13.93513 -13.68412 -13.58110 -12.93975 -12.76845 -12.72360 -12.49379 -12.36928 -12.19502 -12.17944 -12.13428 -11.44159 -11.40564 -11.28829 -11.17180 -10.91030 -10.85160 -10.72824 -10.54986 -10.05828 -9.75524 -9.62764 -9.06782 -8.90134 -8.74988 -8.39506 -7.49513 -6.48183 -4.13266 1.55892 2.16907 3.30917 3.37305 3.45321 3.51856 3.56541 3.65822 4.34845 4.37557 4.40046 4.50681 4.52856 4.63118 4.72230 4.86064 4.94939 5.07925 5.09120 5.18703 5.21473 5.31263 5.34845 5.37667 5.38566 5.51131 5.58916 5.63263 5.65008 5.76074 5.80980 5.84455 5.89055 5.98878 6.02039 6.12068 6.35719 6.53291 6.76039 6.81436 6.95702 6.99143 7.13026 7.46362 7.66347 7.92769 7.94309 8.84589 8.88721 9.50566 10.56938 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.014770 B = 0.003332 C = 0.002771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1895.234328 B = 8400.166317 C =10102.025794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.087 3.913 3 H 0.057 0.943 4 C -0.143 4.143 5 C -0.101 4.101 6 H 0.077 0.923 7 C 0.130 3.870 8 N -0.741 5.741 9 C 0.560 3.440 10 O -0.518 6.518 11 C -0.226 4.226 12 C -0.041 4.041 13 C -0.221 4.221 14 C -0.051 4.051 15 C -0.227 4.227 16 C 0.201 3.799 17 O -0.165 6.165 18 C -0.397 4.397 19 H 0.108 0.892 20 C 0.072 3.928 21 N -0.870 5.870 22 Si 0.901 3.099 23 H -0.274 1.274 24 H -0.239 1.239 25 H -0.286 1.286 26 C -0.152 4.152 27 C 0.063 3.937 28 O -0.382 6.382 29 H 0.064 0.936 30 H 0.071 0.929 31 H 0.062 0.938 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.393 0.607 37 H 0.112 0.888 38 H 0.112 0.888 39 H 0.114 0.886 40 H 0.138 0.862 41 H 0.282 0.718 42 H 0.075 0.925 43 H 0.076 0.924 44 H 0.049 0.951 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.204 11.247 -18.190 23.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.030 3.970 3 H 0.075 0.925 4 C -0.181 4.181 5 C -0.119 4.119 6 H 0.096 0.904 7 C 0.006 3.994 8 N -0.396 5.396 9 C 0.350 3.650 10 O -0.394 6.394 11 C -0.231 4.231 12 C -0.060 4.060 13 C -0.240 4.240 14 C -0.070 4.070 15 C -0.246 4.246 16 C 0.143 3.857 17 O -0.065 6.065 18 C -0.472 4.472 19 H 0.126 0.874 20 C -0.134 4.134 21 N -0.505 5.505 22 Si 0.725 3.275 23 H -0.199 1.199 24 H -0.162 1.162 25 H -0.212 1.212 26 C -0.190 4.190 27 C -0.014 4.014 28 O -0.301 6.301 29 H 0.083 0.917 30 H 0.090 0.910 31 H 0.081 0.919 32 H 0.095 0.905 33 H 0.096 0.904 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.228 0.772 37 H 0.130 0.870 38 H 0.130 0.870 39 H 0.132 0.868 40 H 0.156 0.844 41 H 0.092 0.908 42 H 0.094 0.906 43 H 0.094 0.906 44 H 0.067 0.933 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -10.042 10.501 -17.382 22.655 hybrid contribution 0.055 0.244 0.111 0.274 sum -9.987 10.746 -17.271 22.661 Atomic orbital electron populations 1.21770 0.93060 1.03060 1.02390 1.22076 0.95053 0.94889 0.85020 0.92494 1.22216 0.94687 1.02572 0.98653 1.21443 0.95921 0.99896 0.94685 0.90442 1.21232 0.80578 1.00376 0.97225 1.45876 1.06432 1.56946 1.30371 1.18206 0.87327 0.78530 0.80973 1.90860 1.69972 1.41669 1.36904 1.18862 0.91767 1.11246 1.01253 1.20741 0.94291 0.95537 0.95416 1.20536 0.93743 1.07767 1.01994 1.20967 0.99009 0.94065 0.92912 1.21292 0.93718 1.06880 1.02689 1.19025 0.90219 0.88367 0.88086 1.83781 1.35929 1.57925 1.28890 1.20931 0.92691 1.36858 0.96686 0.87437 1.24494 1.00840 0.94543 0.93496 1.69637 1.36961 1.35706 1.08216 0.86195 0.83044 0.77371 0.80865 1.19944 1.16153 1.21231 1.22285 1.01372 1.00886 0.94479 1.22563 0.80953 0.99485 0.98404 1.87929 1.21084 1.78049 1.43042 0.91716 0.91018 0.91914 0.90503 0.90449 0.91652 0.91657 0.77236 0.86976 0.87019 0.86822 0.84412 0.90813 0.90615 0.90578 0.93261 0.88816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.56 37.16 0.36 -0.66 16 2 C 0.09 0.72 3.26 -26.68 -0.09 0.63 16 3 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 4 C -0.14 -1.22 4.70 -26.59 -0.13 -1.35 16 5 C -0.10 -0.92 2.31 -90.44 -0.21 -1.13 16 6 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 7 C 0.13 1.66 5.07 -4.05 -0.02 1.64 16 8 N -0.74 -10.66 5.26 -61.35 -0.32 -10.98 16 9 C 0.56 11.28 7.76 -12.47 -0.10 11.18 16 10 O -0.52 -12.94 15.17 -16.58 -0.25 -13.19 16 11 C -0.23 -4.57 5.89 -104.81 -0.62 -5.19 16 12 C -0.04 -0.64 9.54 -39.20 -0.37 -1.02 16 13 C -0.22 -3.38 10.02 -39.61 -0.40 -3.78 16 14 C -0.05 -0.86 10.03 -39.53 -0.40 -1.26 16 15 C -0.23 -4.77 9.16 -39.44 -0.36 -5.13 16 16 C 0.20 4.74 6.66 -38.60 -0.26 4.49 16 17 O -0.17 -4.56 6.67 -21.06 -0.14 -4.70 16 18 C -0.40 -11.38 9.95 30.90 0.31 -11.07 16 19 H 0.11 3.06 5.44 -52.49 -0.29 2.78 16 20 C 0.07 2.07 5.49 -17.52 -0.10 1.98 16 21 N -0.87 -25.34 13.96 55.48 0.77 -24.57 16 22 Si 0.90 23.32 28.62 -169.99 -4.86 18.45 16 23 H -0.27 -7.07 7.11 56.52 0.40 -6.67 16 24 H -0.24 -6.53 7.11 56.52 0.40 -6.13 16 25 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 26 C -0.15 -1.31 5.25 -26.59 -0.14 -1.45 16 27 C 0.06 0.50 6.84 37.21 0.25 0.75 16 28 O -0.38 -3.78 10.41 -35.23 -0.37 -4.14 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.39 4.41 5.71 -40.82 -0.23 4.18 16 37 H 0.11 1.30 6.40 -52.49 -0.34 0.97 16 38 H 0.11 1.35 8.06 -52.48 -0.42 0.93 16 39 H 0.11 1.59 8.06 -52.49 -0.42 1.16 16 40 H 0.14 3.01 5.64 -52.49 -0.30 2.72 16 41 H 0.28 7.60 8.31 -40.82 -0.34 7.26 16 42 H 0.08 0.60 7.28 -51.92 -0.38 0.22 16 43 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 LS Contribution 365.51 15.07 5.51 5.51 Total: -1.00 -33.52 365.51 -8.51 -42.03 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -6.58 Total: 2.96 kcal Atomic # 6 Polarization: -9.10 SS G_CDS: -2.26 Total: -11.36 kcal Atomic # 7 Polarization: -36.00 SS G_CDS: 0.45 Total: -35.55 kcal Atomic # 8 Polarization: -21.28 SS G_CDS: -0.76 Total: -22.04 kcal Atomic # 14 Polarization: 23.32 SS G_CDS: -4.86 Total: 18.45 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.52 -8.51 -42.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271558996.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.792 kcal (2) G-P(sol) polarization free energy of solvation -33.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds