Wall clock time and date at job start Tue Mar 31 2020 13:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.48250 * 2 1 4 4 C 1.53098 * 109.48006 * 119.95092 * 2 1 3 5 5 C 1.53184 * 109.15861 * 177.50074 * 4 2 1 6 6 H 1.08998 * 109.54072 * 63.05724 * 5 4 2 7 7 C 1.50692 * 109.54482 * 183.24118 * 5 4 2 8 8 O 1.21279 * 120.00284 * 359.81727 * 7 5 4 9 9 N 1.34782 * 119.99826 * 179.82210 * 7 5 4 10 10 C 1.46496 * 119.99896 * 179.97438 * 9 7 5 11 11 C 1.50704 * 109.47211 * 180.02562 * 10 9 7 12 12 C 1.38299 * 119.93126 * 89.99960 * 11 10 9 13 13 C 1.38103 * 120.06649 * 180.02562 * 12 11 10 14 14 C 1.38880 * 119.92898 * 359.97438 * 13 12 11 15 15 O 1.35750 * 120.06482 * 180.02562 * 14 13 12 16 16 C 1.34833 * 117.00335 * 5.53090 * 15 14 13 17 17 H 1.07997 * 119.99574 * 354.94346 * 16 15 14 18 18 C 1.38653 * 120.00019 * 174.94064 * 16 15 14 19 19 N 1.31559 * 120.00119 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00106 * 180.02562 * 18 16 15 21 21 H 1.48491 * 109.47492 * 180.02562 * 20 18 16 22 22 H 1.48503 * 109.47357 * 300.00667 * 20 18 16 23 23 H 1.48502 * 109.46837 * 59.99973 * 20 18 16 24 24 C 1.38879 * 119.86441 * 0.27433 * 14 13 12 25 25 C 1.38099 * 119.93015 * 359.45160 * 24 14 13 26 26 C 1.53182 * 109.10546 * 303.15396 * 5 4 2 27 27 C 1.53084 * 109.16585 * 56.93235 * 26 5 4 28 28 O 1.42906 * 109.41696 * 302.38967 * 27 26 5 29 29 H 1.08995 * 109.47573 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47052 * 300.02057 * 1 2 3 31 31 H 1.09009 * 109.47039 * 60.01851 * 1 2 3 32 32 H 1.09003 * 109.45610 * 57.64264 * 4 2 1 33 33 H 1.09006 * 109.59948 * 297.44704 * 4 2 1 34 34 H 0.96999 * 119.99784 * 0.02562 * 9 7 5 35 35 H 1.09000 * 109.47394 * 59.99885 * 10 9 7 36 36 H 1.09011 * 109.47345 * 299.99722 * 10 9 7 37 37 H 1.07997 * 119.96906 * 359.97438 * 12 11 10 38 38 H 1.08002 * 120.03564 * 179.97438 * 13 12 11 39 39 H 0.96996 * 120.00022 * 359.97438 * 19 18 16 40 40 H 1.07995 * 120.03419 * 179.72744 * 24 14 13 41 41 H 1.07995 * 119.96912 * 180.27497 * 25 24 14 42 42 H 1.09005 * 109.51856 * 176.84209 * 26 5 4 43 43 H 1.09002 * 109.51783 * 297.02673 * 26 5 4 44 44 H 1.09002 * 109.48222 * 62.37623 * 27 26 5 45 45 H 1.09001 * 109.48165 * 182.40667 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0405 -0.7206 1.2506 5 6 3.5711 -0.7712 1.2120 6 1 3.9702 0.2426 1.2415 7 6 4.0798 -1.5481 2.3988 8 8 3.2971 -2.0134 3.1998 9 7 5.4048 -1.7259 2.5700 10 6 5.8995 -2.4807 3.7240 11 6 7.4051 -2.5328 3.6824 12 6 8.1471 -1.5443 4.3028 13 6 9.5269 -1.5890 4.2660 14 6 10.1692 -2.6282 3.6054 15 8 11.5253 -2.6751 3.5679 16 6 12.1901 -1.7482 4.2869 17 1 11.6456 -0.9640 4.7917 18 6 13.5726 -1.8019 4.3781 19 7 14.2358 -2.7570 3.7626 20 14 14.4935 -0.5182 5.3747 21 1 15.9509 -0.7958 5.3134 22 1 14.2229 0.8306 4.8154 23 1 14.0385 -0.5685 6.7874 24 6 9.4211 -3.6165 2.9789 25 6 8.0417 -3.5693 3.0241 26 6 4.0175 -1.4602 -0.0812 27 6 3.4306 -0.7093 -1.2792 28 8 2.0065 -0.6741 -1.1665 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5142 0.8898 31 1 -0.3633 0.5136 -0.8902 32 1 1.6430 -1.7353 1.2726 33 1 1.7162 -0.1819 2.1410 34 1 6.0309 -1.3534 1.9296 35 1 5.4996 -3.4943 3.6938 36 1 5.5786 -1.9908 4.6434 37 1 7.6471 -0.7363 4.8160 38 1 10.1059 -0.8166 4.7503 39 1 13.7576 -3.4238 3.2454 40 1 9.9177 -4.4234 2.4607 41 1 7.4594 -4.3399 2.5410 42 1 5.1058 -1.4500 -0.1423 43 1 3.6611 -2.4903 -0.0868 44 1 3.8192 0.3090 -1.2958 45 1 3.7099 -1.2201 -2.2007 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271858695.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:27:52 Heat of formation + Delta-G solvation = -130.457725 kcal Electronic energy + Delta-G solvation = -25858.833064 eV Core-core repulsion = 22033.111699 eV Total energy + Delta-G solvation = -3825.721365 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.45269 -40.91442 -39.73138 -38.62393 -35.78580 -34.76901 -34.28421 -33.68138 -31.93450 -31.38649 -28.88592 -27.53609 -26.67979 -25.16427 -23.67378 -23.64859 -22.33873 -21.83491 -20.93736 -20.29295 -18.84983 -18.22814 -17.35642 -17.18507 -17.07604 -16.72958 -16.25976 -15.92455 -15.72451 -15.64952 -15.55323 -15.30644 -15.02636 -14.88328 -14.66400 -14.39844 -14.06452 -13.54689 -13.40710 -13.16688 -13.05722 -12.92074 -12.81775 -12.51663 -12.40015 -12.38004 -12.12038 -12.08032 -11.94541 -11.73042 -11.45618 -11.31991 -10.99606 -10.77087 -10.41797 -10.11730 -9.90623 -9.12374 -8.95518 -6.26899 0.44784 0.47773 1.49130 1.58471 1.60385 1.78409 2.21274 2.34319 2.81967 2.87240 3.09431 3.29618 3.56267 3.65069 3.75424 3.80682 3.93563 3.94374 4.08159 4.20821 4.21599 4.36778 4.45480 4.46285 4.48015 4.52820 4.68204 4.72210 4.74313 4.77324 4.83147 4.92672 5.00234 5.04236 5.08858 5.15993 5.19495 5.24803 5.31808 5.39169 5.44846 5.64010 5.69243 5.97994 6.24276 6.31524 6.53087 6.83408 7.19902 7.58542 8.48723 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.025038 B = 0.002114 C = 0.002087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.009979 B =13243.416391 C =13414.209861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.085 3.915 3 H 0.074 0.926 4 C -0.125 4.125 5 C -0.106 4.106 6 H 0.121 0.879 7 C 0.516 3.484 8 O -0.583 6.583 9 N -0.713 5.713 10 C 0.183 3.817 11 C -0.178 4.178 12 C -0.046 4.046 13 C -0.241 4.241 14 C 0.124 3.876 15 O -0.249 6.249 16 C -0.487 4.487 17 H 0.094 0.906 18 C -0.044 4.044 19 N -0.915 5.915 20 Si 1.144 2.856 21 H -0.275 1.275 22 H -0.258 1.258 23 H -0.261 1.261 24 C -0.203 4.203 25 C -0.044 4.044 26 C -0.144 4.144 27 C 0.061 3.939 28 O -0.400 6.400 29 H 0.054 0.946 30 H 0.084 0.916 31 H 0.068 0.932 32 H 0.057 0.943 33 H 0.078 0.922 34 H 0.412 0.588 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.140 0.860 38 H 0.119 0.881 39 H 0.261 0.739 40 H 0.117 0.883 41 H 0.149 0.851 42 H 0.097 0.903 43 H 0.062 0.938 44 H 0.069 0.931 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.448 7.808 -7.339 25.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.028 3.972 3 H 0.092 0.908 4 C -0.163 4.163 5 C -0.127 4.127 6 H 0.139 0.861 7 C 0.304 3.696 8 O -0.464 6.464 9 N -0.365 5.365 10 C 0.060 3.940 11 C -0.179 4.179 12 C -0.064 4.064 13 C -0.260 4.260 14 C 0.074 3.926 15 O -0.156 6.156 16 C -0.563 4.563 17 H 0.111 0.889 18 C -0.241 4.241 19 N -0.550 5.550 20 Si 0.960 3.040 21 H -0.200 1.200 22 H -0.183 1.183 23 H -0.186 1.186 24 C -0.223 4.223 25 C -0.062 4.062 26 C -0.182 4.182 27 C -0.016 4.016 28 O -0.320 6.320 29 H 0.073 0.927 30 H 0.103 0.897 31 H 0.087 0.913 32 H 0.076 0.924 33 H 0.096 0.904 34 H 0.248 0.752 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.158 0.842 38 H 0.137 0.863 39 H 0.069 0.931 40 H 0.135 0.865 41 H 0.166 0.834 42 H 0.115 0.885 43 H 0.081 0.919 44 H 0.088 0.912 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -22.442 7.702 -6.535 24.610 hybrid contribution -0.601 -0.741 -0.439 1.050 sum -23.043 6.962 -6.975 25.061 Atomic orbital electron populations 1.21783 0.92300 1.02774 1.03339 1.22219 0.95880 0.95264 0.83855 0.90828 1.22009 0.93242 1.01970 0.99107 1.21432 0.97508 1.01087 0.92638 0.86130 1.21032 0.81945 0.79748 0.86878 1.90682 1.56683 1.51756 1.47239 1.46177 1.06981 1.55532 1.27816 1.19880 0.88356 0.96736 0.89044 1.19515 0.94548 0.98046 1.05803 1.20953 0.91714 0.97641 0.96097 1.21265 0.96023 1.01086 1.07636 1.19884 0.83436 0.94820 0.94485 1.83652 1.15379 1.52918 1.63643 1.22585 0.92778 1.08601 1.32307 0.88893 1.28368 0.93403 1.02979 0.99308 1.70717 1.39164 1.14555 1.30552 0.82592 0.74908 0.71854 0.74692 1.19997 1.18290 1.18572 1.20456 0.94437 0.99984 1.07388 1.20890 0.91859 0.97457 0.95984 1.22199 1.02608 1.00079 0.93279 1.22704 0.80093 1.00636 0.98136 1.87931 1.22166 1.78408 1.43491 0.92688 0.89698 0.91281 0.92403 0.90360 0.75216 0.91069 0.91194 0.84188 0.86295 0.93072 0.86492 0.83369 0.88501 0.91877 0.91234 0.87372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 9.56 71.98 0.69 -1.08 16 2 C 0.09 1.20 3.26 30.63 0.10 1.30 16 3 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 4 C -0.13 -2.10 4.02 30.69 0.12 -1.97 16 5 C -0.11 -1.61 2.61 -11.42 -0.03 -1.64 16 6 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 7 C 0.52 11.22 7.16 87.65 0.63 11.85 16 8 O -0.58 -17.51 15.97 -3.03 -0.05 -17.56 16 9 N -0.71 -14.02 5.46 -466.78 -2.55 -16.57 16 10 C 0.18 4.21 5.80 85.63 0.50 4.71 16 11 C -0.18 -4.87 5.25 -19.83 -0.10 -4.97 16 12 C -0.05 -1.41 9.69 22.25 0.22 -1.19 16 13 C -0.24 -9.75 9.17 22.39 0.21 -9.54 16 14 C 0.12 5.77 6.65 22.58 0.15 5.92 16 15 O -0.25 -14.19 9.16 -22.77 -0.21 -14.39 16 16 C -0.49 -27.50 9.49 67.92 0.64 -26.86 16 17 H 0.09 4.86 5.20 -2.91 -0.02 4.84 16 18 C -0.04 -2.47 5.49 84.83 0.47 -2.00 16 19 N -0.92 -56.08 13.70 21.61 0.30 -55.79 16 20 Si 1.14 46.68 29.92 68.60 2.05 48.73 16 21 H -0.28 -11.21 7.11 99.48 0.71 -10.51 16 22 H -0.26 -9.48 7.11 99.48 0.71 -8.77 16 23 H -0.26 -9.69 7.11 99.48 0.71 -8.99 16 24 C -0.20 -7.84 9.99 22.39 0.22 -7.62 16 25 C -0.04 -1.28 9.69 22.25 0.22 -1.07 16 26 C -0.14 -1.87 5.30 30.68 0.16 -1.71 16 27 C 0.06 0.72 6.84 72.01 0.49 1.22 16 28 O -0.40 -6.78 10.41 -148.98 -1.55 -8.33 16 29 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.08 0.79 8.14 -2.38 -0.02 0.77 16 31 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16 32 H 0.06 1.23 8.03 -2.39 -0.02 1.21 16 33 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 34 H 0.41 6.64 7.96 -92.71 -0.74 5.90 16 35 H 0.07 1.67 8.08 -2.39 -0.02 1.65 16 36 H 0.07 1.66 8.08 -2.38 -0.02 1.64 16 37 H 0.14 3.51 8.06 -2.91 -0.02 3.48 16 38 H 0.12 5.01 5.64 -2.91 -0.02 4.99 16 39 H 0.26 16.63 7.97 -92.71 -0.74 15.89 16 40 H 0.12 4.44 8.06 -2.91 -0.02 4.41 16 41 H 0.15 3.41 8.06 -2.91 -0.02 3.38 16 42 H 0.10 0.96 7.68 -2.38 -0.02 0.94 16 43 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 44 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 45 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -73.13 372.01 2.96 -70.17 By element: Atomic # 1 Polarization: 28.11 SS G_CDS: 0.29 Total: 28.40 kcal Atomic # 6 Polarization: -39.34 SS G_CDS: 4.68 Total: -34.66 kcal Atomic # 7 Polarization: -70.11 SS G_CDS: -2.25 Total: -72.36 kcal Atomic # 8 Polarization: -38.47 SS G_CDS: -1.81 Total: -40.28 kcal Atomic # 14 Polarization: 46.68 SS G_CDS: 2.05 Total: 48.73 kcal Total: -73.13 2.96 -70.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271858695.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.291 kcal (2) G-P(sol) polarization free energy of solvation -73.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds