Wall clock time and date at job start Tue Mar 31 2020 13:16:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53011 * 109.47038 * 2 1 4 4 O 1.45197 * 109.47240 * 120.00118 * 2 1 3 5 5 C 1.34229 * 117.00434 * 150.00309 * 4 2 1 6 6 O 1.20831 * 119.99273 * 359.97438 * 5 4 2 7 7 C 1.50697 * 120.00279 * 180.02562 * 5 4 2 8 8 C 1.53000 * 109.47124 * 179.97438 * 7 5 4 9 9 C 1.52999 * 109.47108 * 179.97438 * 8 7 5 10 10 N 1.46492 * 109.47134 * 180.02562 * 9 8 7 11 11 C 1.34777 * 120.00403 * 180.02562 * 10 9 8 12 12 O 1.21592 * 119.99740 * 0.02562 * 11 10 9 13 13 C 1.47639 * 120.00339 * 180.02562 * 11 10 9 14 14 C 1.40007 * 119.89573 * 0.24611 * 13 11 10 15 15 C 1.36318 * 120.10468 * 180.25591 * 14 13 11 16 16 C 1.40884 * 119.89177 * 359.47662 * 15 14 13 17 17 C 1.41116 * 120.10368 * 180.29746 * 16 15 14 18 18 H 1.07997 * 120.00134 * 154.53831 * 17 16 15 19 19 C 1.40227 * 119.99714 * 334.53632 * 17 16 15 20 20 N 1.30644 * 120.00033 * 343.04996 * 19 17 16 21 21 Si 1.86799 * 119.99848 * 163.05218 * 19 17 16 22 22 H 1.48501 * 109.47314 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47265 * 119.99809 * 21 19 17 24 24 H 1.48498 * 109.47305 * 239.99792 * 21 19 17 25 25 C 1.40889 * 119.79628 * 0.27580 * 16 15 14 26 26 C 1.36316 * 119.88883 * 359.97438 * 25 16 15 27 27 H 1.09004 * 109.47519 * 300.00370 * 1 2 3 28 28 H 1.09009 * 109.46965 * 59.99761 * 1 2 3 29 29 H 1.08997 * 109.47453 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47291 * 240.00554 * 2 1 3 31 31 H 1.08994 * 109.47023 * 299.99693 * 3 2 1 32 32 H 1.09001 * 109.46627 * 60.00147 * 3 2 1 33 33 H 1.08999 * 109.46919 * 179.97438 * 3 2 1 34 34 H 1.09000 * 109.46828 * 59.99640 * 7 5 4 35 35 H 1.09003 * 109.46961 * 300.00002 * 7 5 4 36 36 H 1.08997 * 109.46730 * 60.00097 * 8 7 5 37 37 H 1.08995 * 109.47087 * 300.00452 * 8 7 5 38 38 H 1.09000 * 109.46513 * 60.00323 * 9 8 7 39 39 H 1.08994 * 109.47508 * 300.00819 * 9 8 7 40 40 H 0.97005 * 120.00342 * 0.02562 * 10 9 8 41 41 H 1.08000 * 119.95276 * 0.03420 * 14 13 11 42 42 H 1.08007 * 120.05277 * 179.74755 * 15 14 13 43 43 H 0.97005 * 119.99903 * 179.97438 * 20 19 17 44 44 H 1.08002 * 120.05358 * 180.02562 * 25 16 15 45 45 H 1.08002 * 119.94674 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0140 -0.6845 1.1855 5 6 3.1936 -1.3170 1.0852 6 8 3.8014 -1.2996 0.0410 7 6 3.7594 -2.0496 2.2743 8 6 5.1018 -2.6781 1.8948 9 6 5.6765 -3.4214 3.1023 10 7 6.9620 -4.0226 2.7391 11 6 7.6561 -4.7317 3.6512 12 8 7.2150 -4.8728 4.7754 13 6 8.9520 -5.3371 3.2853 14 6 9.4604 -5.1688 1.9916 15 6 10.6540 -5.7303 1.6477 16 6 11.3815 -6.4716 2.5996 17 6 12.6205 -7.0495 2.2501 18 1 13.3580 -7.2485 3.0136 19 6 12.8942 -7.3653 0.9116 20 7 11.9187 -7.4421 0.0459 21 14 14.6536 -7.6761 0.3662 22 1 15.5657 -7.5282 1.5287 23 1 14.7666 -9.0521 -0.1804 24 1 15.0272 -6.6943 -0.6834 25 6 10.8683 -6.6338 3.9016 26 6 9.6714 -6.0729 4.2348 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5137 -0.8900 31 1 1.6767 1.9564 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 3.1300 1.4426 0.0005 34 1 3.0662 -2.8325 2.5822 35 1 3.9052 -1.3494 3.0968 36 1 5.7950 -1.8955 1.5867 37 1 4.9556 -3.3783 1.0724 38 1 4.9832 -4.2039 3.4107 39 1 5.8227 -2.7209 3.9244 40 1 7.3139 -3.9103 1.8421 41 1 8.9044 -4.5963 1.2640 42 1 11.0434 -5.6034 0.6483 43 1 12.1081 -7.6602 -0.8801 44 1 11.4227 -7.2008 4.6347 45 1 9.2770 -6.1969 5.2325 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274156538.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:16:12 Heat of formation + Delta-G solvation = -132.739978 kcal Electronic energy + Delta-G solvation = -25007.202652 eV Core-core repulsion = 21181.382322 eV Total energy + Delta-G solvation = -3825.820331 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.85084 -39.10577 -37.41877 -37.08980 -35.33808 -33.85893 -33.60322 -32.54999 -30.21112 -29.43995 -27.73713 -27.56510 -25.67520 -23.27788 -21.85790 -21.54722 -20.85947 -20.71008 -19.49333 -18.10488 -17.52029 -16.87549 -16.71711 -16.50526 -15.58123 -15.48988 -15.18436 -14.66102 -14.19371 -14.01127 -13.94614 -13.65945 -13.43834 -13.23300 -12.75791 -12.75204 -12.66226 -12.41727 -12.35278 -12.11439 -12.10608 -11.90165 -11.57932 -11.37936 -11.33162 -11.27900 -11.10202 -10.93444 -10.91309 -10.66781 -10.63179 -10.03070 -9.55813 -9.35966 -8.98301 -8.60875 -7.71622 -7.53128 -7.02473 -4.60029 1.95860 2.23082 2.32829 2.90979 2.95698 3.01182 3.04071 3.74643 3.77885 3.87561 4.30834 4.35812 4.47131 4.57189 4.69981 4.71820 4.75586 4.98735 5.08246 5.26384 5.27668 5.31172 5.33530 5.44628 5.57519 5.59078 5.61579 5.70473 5.92509 5.98994 6.05656 6.17258 6.23978 6.32251 6.77410 6.83462 6.92646 7.05967 7.13807 7.44323 7.49941 7.65481 7.79425 7.86700 8.07694 8.23538 8.40671 8.63699 8.75667 9.07198 9.89681 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.020294 B = 0.001926 C = 0.001786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.399181 B =14536.734628 C =15670.447393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.078 3.922 3 C -0.170 4.170 4 O -0.355 6.355 5 C 0.462 3.538 6 O -0.506 6.506 7 C -0.110 4.110 8 C -0.122 4.122 9 C 0.125 3.875 10 N -0.743 5.743 11 C 0.572 3.428 12 O -0.576 6.576 13 C -0.284 4.284 14 C -0.063 4.063 15 C -0.177 4.177 16 C 0.128 3.872 17 C -0.443 4.443 18 H 0.085 0.915 19 C 0.074 3.926 20 N -0.773 5.773 21 Si 0.913 3.087 22 H -0.257 1.257 23 H -0.272 1.272 24 H -0.269 1.269 25 C -0.238 4.238 26 C -0.022 4.022 27 H 0.068 0.932 28 H 0.077 0.923 29 H 0.065 0.935 30 H 0.085 0.915 31 H 0.074 0.926 32 H 0.066 0.934 33 H 0.062 0.938 34 H 0.110 0.890 35 H 0.110 0.890 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.399 0.601 41 H 0.089 0.911 42 H 0.120 0.880 43 H 0.286 0.714 44 H 0.098 0.902 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.658 12.673 -3.164 21.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.024 3.976 3 C -0.228 4.228 4 O -0.273 6.273 5 C 0.305 3.695 6 O -0.393 6.393 7 C -0.148 4.148 8 C -0.160 4.160 9 C 0.000 4.000 10 N -0.396 5.396 11 C 0.367 3.633 12 O -0.459 6.459 13 C -0.289 4.289 14 C -0.082 4.082 15 C -0.196 4.196 16 C 0.125 3.875 17 C -0.470 4.470 18 H 0.103 0.897 19 C -0.147 4.147 20 N -0.396 5.396 21 Si 0.737 3.263 22 H -0.181 1.181 23 H -0.197 1.197 24 H -0.194 1.194 25 C -0.258 4.258 26 C -0.042 4.042 27 H 0.087 0.913 28 H 0.096 0.904 29 H 0.084 0.916 30 H 0.103 0.897 31 H 0.093 0.907 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.128 0.872 35 H 0.128 0.872 36 H 0.097 0.903 37 H 0.098 0.902 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.234 0.766 41 H 0.107 0.893 42 H 0.138 0.862 43 H 0.097 0.903 44 H 0.116 0.884 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -16.880 12.544 -2.960 21.238 hybrid contribution 0.829 -0.064 -1.042 1.333 sum -16.051 12.480 -4.002 20.722 Atomic orbital electron populations 1.21892 0.92367 1.03238 1.03183 1.22744 0.94994 0.92760 0.87124 1.22213 1.02247 0.95193 1.03099 1.86572 1.36813 1.62712 1.41207 1.23818 0.79045 0.76342 0.90343 1.90681 1.59245 1.58477 1.30897 1.21305 0.97988 1.00655 0.94833 1.21634 0.94837 1.00779 0.98773 1.21108 0.85865 0.96863 0.96123 1.45873 1.21697 1.56136 1.15912 1.18583 0.84523 0.76569 0.83640 1.90631 1.71346 1.62459 1.21423 1.18903 0.97824 1.15543 0.96598 1.20487 0.96088 0.97938 0.93709 1.20979 0.96346 1.01540 1.00768 1.17806 0.91588 0.87238 0.90892 1.19877 1.00459 1.33593 0.93119 0.89678 1.26100 0.99538 0.92675 0.96429 1.69747 1.33599 1.31447 1.04824 0.86167 0.81711 0.78789 0.79653 1.18065 1.19682 1.19408 1.20726 0.97979 1.08837 0.98217 1.20366 0.93591 0.93337 0.96864 0.91339 0.90374 0.91637 0.89686 0.90681 0.91496 0.91891 0.87219 0.87231 0.90266 0.90220 0.91818 0.91836 0.76606 0.89275 0.86197 0.90294 0.88361 0.88087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 9.57 37.15 0.36 -0.46 16 2 C 0.08 0.62 3.18 -26.73 -0.09 0.54 16 3 C -0.17 -1.17 9.55 37.16 0.35 -0.81 16 4 O -0.36 -3.37 9.88 -39.26 -0.39 -3.76 16 5 C 0.46 4.79 7.93 36.00 0.29 5.07 16 6 O -0.51 -6.70 15.20 -18.75 -0.29 -6.99 16 7 C -0.11 -0.90 5.81 -27.88 -0.16 -1.06 16 8 C -0.12 -1.26 4.62 -26.73 -0.12 -1.39 16 9 C 0.12 1.63 5.67 -4.05 -0.02 1.60 16 10 N -0.74 -12.31 5.50 -61.32 -0.34 -12.65 16 11 C 0.57 12.17 7.76 -12.42 -0.10 12.07 16 12 O -0.58 -13.68 16.32 5.29 0.09 -13.59 16 13 C -0.28 -6.53 5.89 -104.73 -0.62 -7.14 16 14 C -0.06 -1.40 9.47 -39.61 -0.38 -1.78 16 15 C -0.18 -4.36 8.63 -39.27 -0.34 -4.70 16 16 C 0.13 3.27 5.57 -106.80 -0.59 2.68 16 17 C -0.44 -11.05 9.05 -37.74 -0.34 -11.39 16 18 H 0.09 2.03 7.90 -52.49 -0.41 1.62 16 19 C 0.07 1.72 5.15 -17.31 -0.09 1.63 16 20 N -0.77 -18.62 10.95 55.56 0.61 -18.01 16 21 Si 0.91 17.35 29.59 -169.99 -5.03 12.32 16 22 H -0.26 -4.85 7.11 56.52 0.40 -4.45 16 23 H -0.27 -5.09 7.11 56.52 0.40 -4.69 16 24 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 25 C -0.24 -5.79 9.73 -39.27 -0.38 -6.17 16 26 C -0.02 -0.53 9.52 -39.61 -0.38 -0.91 16 27 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.08 0.30 8.14 -51.92 -0.42 -0.12 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.09 0.76 7.16 -51.93 -0.37 0.39 16 31 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.08 0.85 8.10 -51.93 -0.42 0.43 16 37 H 0.08 0.87 8.10 -51.93 -0.42 0.45 16 38 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.40 6.00 6.47 -40.82 -0.26 5.74 16 41 H 0.09 1.69 6.37 -52.49 -0.33 1.35 16 42 H 0.12 2.99 6.18 -52.48 -0.32 2.67 16 43 H 0.29 6.18 8.29 -40.82 -0.34 5.84 16 44 H 0.10 2.22 8.06 -52.49 -0.42 1.80 16 45 H 0.10 2.31 7.63 -52.49 -0.40 1.91 16 LS Contribution 381.57 15.07 5.75 5.75 Total: -1.00 -30.55 381.57 -8.94 -39.49 By element: Atomic # 1 Polarization: 16.40 SS G_CDS: -6.74 Total: 9.66 kcal Atomic # 6 Polarization: -9.61 SS G_CDS: -2.61 Total: -12.22 kcal Atomic # 7 Polarization: -30.93 SS G_CDS: 0.27 Total: -30.66 kcal Atomic # 8 Polarization: -23.75 SS G_CDS: -0.59 Total: -24.34 kcal Atomic # 14 Polarization: 17.35 SS G_CDS: -5.03 Total: 12.32 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -30.55 -8.94 -39.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274156538.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.250 kcal (2) G-P(sol) polarization free energy of solvation -30.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds