Wall clock time and date at job start Tue Mar 31 2020 13:16:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53011 * 109.47038 * 2 1 4 4 O 1.45197 * 109.47240 * 120.00118 * 2 1 3 5 5 C 1.34229 * 117.00434 * 150.00309 * 4 2 1 6 6 O 1.20831 * 119.99273 * 359.97438 * 5 4 2 7 7 C 1.50697 * 120.00279 * 180.02562 * 5 4 2 8 8 C 1.53000 * 109.47124 * 179.97438 * 7 5 4 9 9 C 1.52999 * 109.47108 * 179.97438 * 8 7 5 10 10 N 1.46492 * 109.47134 * 180.02562 * 9 8 7 11 11 C 1.34777 * 120.00403 * 180.02562 * 10 9 8 12 12 O 1.21592 * 119.99740 * 0.02562 * 11 10 9 13 13 C 1.47639 * 120.00339 * 180.02562 * 11 10 9 14 14 C 1.40007 * 119.89573 * 0.24611 * 13 11 10 15 15 C 1.36318 * 120.10468 * 180.25591 * 14 13 11 16 16 C 1.40884 * 119.89177 * 359.47662 * 15 14 13 17 17 C 1.41116 * 120.10368 * 180.29746 * 16 15 14 18 18 H 1.07997 * 120.00134 * 154.53831 * 17 16 15 19 19 C 1.40227 * 119.99714 * 334.53632 * 17 16 15 20 20 N 1.30644 * 120.00033 * 343.04996 * 19 17 16 21 21 Si 1.86799 * 119.99848 * 163.05218 * 19 17 16 22 22 H 1.48501 * 109.47314 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47265 * 119.99809 * 21 19 17 24 24 H 1.48498 * 109.47305 * 239.99792 * 21 19 17 25 25 C 1.40889 * 119.79628 * 0.27580 * 16 15 14 26 26 C 1.36316 * 119.88883 * 359.97438 * 25 16 15 27 27 H 1.09004 * 109.47519 * 300.00370 * 1 2 3 28 28 H 1.09009 * 109.46965 * 59.99761 * 1 2 3 29 29 H 1.08997 * 109.47453 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47291 * 240.00554 * 2 1 3 31 31 H 1.08994 * 109.47023 * 299.99693 * 3 2 1 32 32 H 1.09001 * 109.46627 * 60.00147 * 3 2 1 33 33 H 1.08999 * 109.46919 * 179.97438 * 3 2 1 34 34 H 1.09000 * 109.46828 * 59.99640 * 7 5 4 35 35 H 1.09003 * 109.46961 * 300.00002 * 7 5 4 36 36 H 1.08997 * 109.46730 * 60.00097 * 8 7 5 37 37 H 1.08995 * 109.47087 * 300.00452 * 8 7 5 38 38 H 1.09000 * 109.46513 * 60.00323 * 9 8 7 39 39 H 1.08994 * 109.47508 * 300.00819 * 9 8 7 40 40 H 0.97005 * 120.00342 * 0.02562 * 10 9 8 41 41 H 1.08000 * 119.95276 * 0.03420 * 14 13 11 42 42 H 1.08007 * 120.05277 * 179.74755 * 15 14 13 43 43 H 0.97005 * 119.99903 * 179.97438 * 20 19 17 44 44 H 1.08002 * 120.05358 * 180.02562 * 25 16 15 45 45 H 1.08002 * 119.94674 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0140 -0.6845 1.1855 5 6 3.1936 -1.3170 1.0852 6 8 3.8014 -1.2996 0.0410 7 6 3.7594 -2.0496 2.2743 8 6 5.1018 -2.6781 1.8948 9 6 5.6765 -3.4214 3.1023 10 7 6.9620 -4.0226 2.7391 11 6 7.6561 -4.7317 3.6512 12 8 7.2150 -4.8728 4.7754 13 6 8.9520 -5.3371 3.2853 14 6 9.4604 -5.1688 1.9916 15 6 10.6540 -5.7303 1.6477 16 6 11.3815 -6.4716 2.5996 17 6 12.6205 -7.0495 2.2501 18 1 13.3580 -7.2485 3.0136 19 6 12.8942 -7.3653 0.9116 20 7 11.9187 -7.4421 0.0459 21 14 14.6536 -7.6761 0.3662 22 1 15.5657 -7.5282 1.5287 23 1 14.7666 -9.0521 -0.1804 24 1 15.0272 -6.6943 -0.6834 25 6 10.8683 -6.6338 3.9016 26 6 9.6714 -6.0729 4.2348 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5137 -0.8900 31 1 1.6767 1.9564 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 3.1300 1.4426 0.0005 34 1 3.0662 -2.8325 2.5822 35 1 3.9052 -1.3494 3.0968 36 1 5.7950 -1.8955 1.5867 37 1 4.9556 -3.3783 1.0724 38 1 4.9832 -4.2039 3.4107 39 1 5.8227 -2.7209 3.9244 40 1 7.3139 -3.9103 1.8421 41 1 8.9044 -4.5963 1.2640 42 1 11.0434 -5.6034 0.6483 43 1 12.1081 -7.6602 -0.8801 44 1 11.4227 -7.2008 4.6347 45 1 9.2770 -6.1969 5.2325 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274156538.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:16:11 Heat of formation + Delta-G solvation = -148.980533 kcal Electronic energy + Delta-G solvation = -25007.906895 eV Core-core repulsion = 21181.382322 eV Total energy + Delta-G solvation = -3826.524574 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.63468 -40.75267 -38.95128 -38.11161 -36.56517 -35.66170 -34.30978 -33.66389 -31.93602 -31.29440 -28.79102 -28.21610 -27.28087 -24.36953 -23.33917 -22.77729 -22.31555 -21.54983 -21.03009 -19.36612 -18.93768 -18.28513 -17.61186 -17.46606 -17.18676 -16.59550 -16.48671 -15.74768 -15.52116 -15.40920 -15.06580 -15.03933 -14.66508 -14.40198 -14.20253 -13.89222 -13.66914 -13.44485 -13.37161 -13.19205 -13.13542 -13.08993 -12.85071 -12.71992 -12.63125 -12.51483 -12.37257 -11.95529 -11.91436 -11.75506 -11.64089 -11.43552 -11.37075 -11.13372 -10.71699 -10.05063 -9.57163 -9.39382 -8.78833 -6.48464 0.44060 1.15073 1.17355 1.38540 1.42031 1.55354 1.62700 2.12697 2.18143 2.45394 2.79191 3.56819 3.69094 3.80199 3.91480 3.92299 3.97223 4.09174 4.14817 4.32153 4.35354 4.45340 4.51009 4.56867 4.65985 4.72879 4.75000 4.83075 4.89722 4.92855 5.03339 5.06268 5.11705 5.15667 5.17820 5.21031 5.30190 5.51832 5.57200 5.61565 5.82496 5.94646 5.99800 6.23016 6.54372 6.69635 6.73365 6.77466 6.89011 7.44332 8.16638 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.020294 B = 0.001926 C = 0.001786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.399181 B =14536.734628 C =15670.447393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.069 3.931 3 C -0.167 4.167 4 O -0.357 6.357 5 C 0.462 3.538 6 O -0.541 6.541 7 C -0.104 4.104 8 C -0.110 4.110 9 C 0.124 3.876 10 N -0.728 5.728 11 C 0.572 3.428 12 O -0.604 6.604 13 C -0.293 4.293 14 C -0.055 4.055 15 C -0.197 4.197 16 C 0.100 3.900 17 C -0.474 4.474 18 H 0.085 0.915 19 C 0.037 3.963 20 N -0.801 5.801 21 Si 0.988 3.012 22 H -0.256 1.256 23 H -0.264 1.264 24 H -0.261 1.261 25 C -0.252 4.252 26 C -0.033 4.033 27 H 0.074 0.926 28 H 0.096 0.904 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.092 0.908 32 H 0.074 0.926 33 H 0.043 0.957 34 H 0.131 0.869 35 H 0.132 0.868 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.407 0.593 41 H 0.123 0.877 42 H 0.113 0.887 43 H 0.296 0.704 44 H 0.105 0.895 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.637 13.627 -3.815 22.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.014 3.986 3 C -0.224 4.224 4 O -0.274 6.274 5 C 0.307 3.693 6 O -0.431 6.431 7 C -0.142 4.142 8 C -0.148 4.148 9 C 0.000 4.000 10 N -0.380 5.380 11 C 0.365 3.635 12 O -0.488 6.488 13 C -0.298 4.298 14 C -0.074 4.074 15 C -0.217 4.217 16 C 0.097 3.903 17 C -0.501 4.501 18 H 0.103 0.897 19 C -0.182 4.182 20 N -0.424 5.424 21 Si 0.808 3.192 22 H -0.180 1.180 23 H -0.189 1.189 24 H -0.185 1.185 25 C -0.271 4.271 26 C -0.052 4.052 27 H 0.093 0.907 28 H 0.115 0.885 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.111 0.889 32 H 0.093 0.907 33 H 0.062 0.938 34 H 0.149 0.851 35 H 0.149 0.851 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.244 0.756 41 H 0.140 0.860 42 H 0.131 0.869 43 H 0.108 0.892 44 H 0.123 0.877 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -17.906 13.524 -3.623 22.730 hybrid contribution 0.996 -0.310 -0.839 1.339 sum -16.910 13.215 -4.463 21.920 Atomic orbital electron populations 1.21902 0.90319 1.03536 1.04403 1.22993 0.96589 0.92941 0.86050 1.22207 1.00983 0.94816 1.04432 1.86569 1.36333 1.62574 1.41941 1.24188 0.78904 0.75860 0.90315 1.90671 1.60184 1.59887 1.32366 1.21326 0.96982 1.01465 0.94430 1.21477 0.95866 1.00254 0.97238 1.21307 0.84114 0.97082 0.97454 1.45781 1.22367 1.54494 1.15388 1.18347 0.84251 0.77018 0.83842 1.90613 1.71882 1.63712 1.22637 1.19218 0.98755 1.15166 0.96652 1.20737 0.95386 0.97149 0.94110 1.21010 0.97513 1.02684 1.00473 1.18164 0.92466 0.88045 0.91641 1.20133 1.00661 1.34895 0.94420 0.89654 1.26934 1.03707 0.91793 0.95767 1.69768 1.35668 1.31427 1.05560 0.85060 0.76064 0.78968 0.79131 1.17983 1.18857 1.18522 1.20871 0.98500 1.09451 0.98290 1.20528 0.93632 0.93645 0.97416 0.90719 0.88534 0.91811 0.91187 0.88890 0.90655 0.93794 0.85087 0.85050 0.90669 0.90765 0.91492 0.91351 0.75646 0.85964 0.86947 0.89243 0.87709 0.87721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.32 9.57 71.98 0.69 -0.63 16 2 C 0.07 1.01 3.18 30.60 0.10 1.11 16 3 C -0.17 -2.09 9.55 71.99 0.69 -1.41 16 4 O -0.36 -6.28 9.88 -51.41 -0.51 -6.79 16 5 C 0.46 9.01 7.93 71.23 0.56 9.57 16 6 O -0.54 -14.12 15.20 21.95 0.33 -13.79 16 7 C -0.10 -1.46 5.81 29.85 0.17 -1.29 16 8 C -0.11 -2.06 4.62 30.59 0.14 -1.92 16 9 C 0.12 2.97 5.67 86.38 0.49 3.46 16 10 N -0.73 -22.93 5.50 -466.18 -2.57 -25.49 16 11 C 0.57 23.82 7.76 86.73 0.67 24.50 16 12 O -0.60 -28.26 16.32 -4.00 -0.07 -28.33 16 13 C -0.29 -13.43 5.89 -19.93 -0.12 -13.55 16 14 C -0.05 -2.43 9.47 22.25 0.21 -2.22 16 15 C -0.20 -9.86 8.63 22.47 0.19 -9.67 16 16 C 0.10 5.24 5.57 -21.28 -0.12 5.12 16 17 C -0.47 -24.12 9.05 23.46 0.21 -23.91 16 18 H 0.09 4.17 7.90 -2.91 -0.02 4.15 16 19 C 0.04 1.72 5.15 85.35 0.44 2.16 16 20 N -0.80 -38.70 10.95 21.87 0.24 -38.46 16 21 Si 0.99 35.13 29.59 68.60 2.03 37.16 16 22 H -0.26 -8.99 7.11 99.48 0.71 -8.29 16 23 H -0.26 -9.01 7.11 99.48 0.71 -8.30 16 24 H -0.26 -8.87 7.11 99.48 0.71 -8.16 16 25 C -0.25 -12.55 9.73 22.47 0.22 -12.34 16 26 C -0.03 -1.59 9.52 22.25 0.21 -1.38 16 27 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.10 0.52 8.14 -2.38 -0.02 0.50 16 29 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.07 1.24 7.16 -2.39 -0.02 1.22 16 31 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.13 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.13 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.07 1.49 8.10 -2.39 -0.02 1.48 16 37 H 0.07 1.50 8.10 -2.39 -0.02 1.48 16 38 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.41 11.46 6.47 -92.70 -0.60 10.86 16 41 H 0.12 4.44 6.37 -2.91 -0.02 4.42 16 42 H 0.11 5.71 6.18 -2.91 -0.02 5.69 16 43 H 0.30 12.70 8.29 -92.70 -0.77 11.93 16 44 H 0.10 4.90 8.06 -2.91 -0.02 4.88 16 45 H 0.10 4.87 7.63 -2.91 -0.02 4.84 16 Total: -1.00 -66.73 381.57 4.63 -62.10 By element: Atomic # 1 Polarization: 35.57 SS G_CDS: 0.40 Total: 35.97 kcal Atomic # 6 Polarization: -27.14 SS G_CDS: 4.77 Total: -22.37 kcal Atomic # 7 Polarization: -61.62 SS G_CDS: -2.33 Total: -63.95 kcal Atomic # 8 Polarization: -48.66 SS G_CDS: -0.24 Total: -48.90 kcal Atomic # 14 Polarization: 35.13 SS G_CDS: 2.03 Total: 37.16 kcal Total: -66.73 4.63 -62.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274156538.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.882 kcal (2) G-P(sol) polarization free energy of solvation -66.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds