Wall clock time and date at job start Tue Mar 31 2020 13:32:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.99954 * 2 1 4 4 C 1.51447 * 109.98747 * 121.29710 * 2 1 3 5 5 O 1.20754 * 126.33895 * 298.96862 * 4 2 1 6 6 C 1.51839 * 107.31731 * 118.99207 * 4 2 1 7 7 C 1.54892 * 104.43372 * 23.78811 * 6 4 2 8 8 C 1.54278 * 109.98196 * 238.71641 * 2 1 3 9 9 H 1.09006 * 110.56907 * 336.23565 * 8 2 1 10 10 C 1.52996 * 110.57254 * 98.95626 * 8 2 1 11 11 C 1.50702 * 109.47159 * 184.99785 * 10 8 2 12 12 O 1.21283 * 120.00262 * 0.02562 * 11 10 8 13 13 N 1.34777 * 119.99928 * 179.72352 * 11 10 8 14 14 C 1.46499 * 120.00199 * 180.27479 * 13 11 10 15 15 C 1.50697 * 109.46949 * 90.00203 * 14 13 11 16 16 H 1.08004 * 120.00186 * 0.02562 * 15 14 13 17 17 C 1.37881 * 120.00081 * 180.02562 * 15 14 13 18 18 N 1.31519 * 120.00096 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 120.00103 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.46956 * 89.99765 * 19 17 15 21 21 H 1.48497 * 109.47226 * 210.00189 * 19 17 15 22 22 H 1.48501 * 109.47027 * 329.99834 * 19 17 15 23 23 C 1.46506 * 120.00264 * 0.28128 * 13 11 10 24 24 C 1.50699 * 109.47106 * 89.99354 * 23 13 11 25 25 C 1.34513 * 125.78754 * 90.00726 * 24 23 13 26 26 C 1.41383 * 106.84275 * 180.02562 * 25 24 23 27 27 C 1.34517 * 106.83951 * 359.97438 * 26 25 24 28 28 O 1.34301 * 125.79267 * 269.69443 * 24 23 13 29 29 H 1.09002 * 109.46857 * 181.29036 * 1 2 3 30 30 H 1.08998 * 109.46727 * 301.28363 * 1 2 3 31 31 H 1.08990 * 109.47437 * 61.28641 * 1 2 3 32 32 H 1.08997 * 110.44555 * 142.52948 * 6 4 2 33 33 H 1.08998 * 110.44159 * 264.92632 * 6 4 2 34 34 H 1.09007 * 110.83448 * 204.16674 * 7 6 4 35 35 H 1.08997 * 110.83440 * 80.58790 * 7 6 4 36 36 H 1.09004 * 109.47066 * 64.99988 * 10 8 2 37 37 H 1.08994 * 109.47405 * 304.99818 * 10 8 2 38 38 H 1.09001 * 109.47567 * 210.00057 * 14 13 11 39 39 H 1.09005 * 109.47076 * 330.00563 * 14 13 11 40 40 H 0.96991 * 119.99957 * 180.02562 * 18 17 15 41 41 H 1.08994 * 109.46996 * 209.99677 * 23 13 11 42 42 H 1.09001 * 109.46578 * 329.99540 * 23 13 11 43 43 H 1.08004 * 126.57763 * 359.95806 * 25 24 23 44 44 H 1.07999 * 126.58037 * 179.97438 * 26 25 24 45 45 H 1.07996 * 125.79357 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0477 -0.7393 1.2161 5 8 1.8495 -0.4451 2.3704 6 6 2.8625 -1.9186 0.7152 7 6 3.3052 -1.5045 -0.7101 8 6 2.0572 -0.7529 -1.2391 9 1 1.3103 -1.4570 -1.6059 10 6 2.4505 0.2335 -2.3405 11 6 2.8448 -0.5281 -3.5797 12 8 2.8138 -1.7406 -3.5818 13 7 3.2261 0.1382 -4.6874 14 6 3.6036 -0.6021 -5.8940 15 6 2.3837 -0.8211 -6.7512 16 1 1.4233 -0.4461 -6.4296 17 6 2.4936 -1.5004 -7.9460 18 7 3.6630 -1.9575 -8.3374 19 14 0.9815 -1.7713 -9.0090 20 1 0.8308 -0.6357 -9.9539 21 1 1.1341 -3.0349 -9.7738 22 1 -0.2224 -1.8586 -8.1440 23 6 3.2631 1.6027 -4.6851 24 6 4.6251 2.0701 -4.2407 25 6 5.6766 2.3072 -5.0453 26 6 6.7421 2.7242 -4.2149 27 6 6.2779 2.7175 -2.9524 28 8 4.9933 2.3261 -2.9748 29 1 -0.3633 -1.0274 0.0231 30 1 -0.3633 0.5336 0.8782 31 1 -0.3634 0.4937 -0.9012 32 1 3.7321 -2.0787 1.3525 33 1 2.2477 -2.8180 0.6787 34 1 3.5168 -2.3823 -1.3208 35 1 4.1692 -0.8411 -0.6703 36 1 3.2920 0.8386 -2.0028 37 1 1.6042 0.8821 -2.5666 38 1 4.3435 -0.0305 -6.4544 39 1 4.0269 -1.5660 -5.6113 40 1 3.7403 -2.4350 -9.1781 41 1 3.0620 1.9729 -5.6903 42 1 2.5065 1.9841 -3.9994 43 1 5.7023 2.1987 -6.1196 44 1 7.7378 2.9959 -4.5330 45 1 6.8412 2.9852 -2.0708 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279669079.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:20 Heat of formation + Delta-G solvation = -71.730376 kcal Electronic energy + Delta-G solvation = -27449.984540 eV Core-core repulsion = 23626.809785 eV Total energy + Delta-G solvation = -3823.174756 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.36347 -40.22998 -38.99064 -36.67111 -35.17508 -32.87658 -32.72296 -31.58803 -30.67282 -30.14775 -27.48837 -25.58094 -24.87848 -24.63216 -22.60272 -21.52452 -20.67995 -20.43200 -19.15265 -18.52302 -17.36139 -16.64226 -16.35553 -16.05236 -15.90266 -15.58879 -15.13618 -14.91752 -14.51771 -14.29954 -14.21298 -13.77801 -13.36183 -13.13281 -12.98319 -12.66027 -12.58522 -12.47395 -12.31644 -12.22492 -12.17382 -11.70650 -11.59600 -11.36987 -11.25875 -10.97644 -10.93562 -10.65780 -10.59974 -10.54562 -10.22080 -9.76205 -9.69314 -9.47682 -8.92393 -8.48285 -8.34247 -7.83404 -6.08868 -4.14022 1.83574 1.86383 2.79192 3.09215 3.26887 3.34116 3.36639 3.44005 3.87544 4.03659 4.39017 4.44335 4.62769 4.79194 4.88771 5.04676 5.09109 5.14972 5.21863 5.23178 5.26294 5.27814 5.38951 5.43384 5.49047 5.59399 5.67886 5.75910 5.82215 5.88874 5.91596 5.96350 5.97720 6.04962 6.15292 6.26077 6.29482 6.43462 6.68081 6.97871 7.28152 7.39680 7.40307 7.46205 7.87075 8.17381 8.28886 8.84544 9.01122 9.51461 10.99246 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.009984 B = 0.004506 C = 0.003414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2803.817183 B = 6212.906121 C = 8198.460356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.152 4.152 3 H 0.103 0.897 4 C 0.375 3.625 5 O -0.453 6.453 6 C -0.183 4.183 7 C -0.113 4.113 8 C -0.067 4.067 9 H 0.095 0.905 10 C -0.138 4.138 11 C 0.510 3.490 12 O -0.532 6.532 13 N -0.595 5.595 14 C 0.247 3.753 15 C -0.528 4.528 16 H 0.058 0.942 17 C 0.063 3.937 18 N -0.893 5.893 19 Si 0.897 3.103 20 H -0.280 1.280 21 H -0.285 1.285 22 H -0.274 1.274 23 C 0.191 3.809 24 C -0.026 4.026 25 C -0.194 4.194 26 C -0.213 4.213 27 C -0.051 4.051 28 O -0.177 6.177 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.069 0.931 32 H 0.089 0.911 33 H 0.104 0.896 34 H 0.092 0.908 35 H 0.069 0.931 36 H 0.092 0.908 37 H 0.089 0.911 38 H 0.032 0.968 39 H 0.044 0.956 40 H 0.263 0.737 41 H 0.115 0.885 42 H 0.084 0.916 43 H 0.150 0.850 44 H 0.144 0.856 45 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.945 9.000 13.276 16.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.171 4.171 3 H 0.121 0.879 4 C 0.251 3.749 5 O -0.326 6.326 6 C -0.221 4.221 7 C -0.150 4.150 8 C -0.085 4.085 9 H 0.113 0.887 10 C -0.178 4.178 11 C 0.297 3.703 12 O -0.408 6.408 13 N -0.327 5.327 14 C 0.128 3.872 15 C -0.567 4.567 16 H 0.076 0.924 17 C -0.140 4.140 18 N -0.532 5.532 19 Si 0.725 3.275 20 H -0.206 1.206 21 H -0.211 1.211 22 H -0.199 1.199 23 C 0.066 3.934 24 C -0.077 4.077 25 C -0.214 4.214 26 C -0.232 4.232 27 C -0.119 4.119 28 O -0.074 6.074 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.107 0.893 33 H 0.122 0.878 34 H 0.111 0.889 35 H 0.088 0.912 36 H 0.110 0.890 37 H 0.107 0.893 38 H 0.050 0.950 39 H 0.062 0.938 40 H 0.073 0.927 41 H 0.133 0.867 42 H 0.102 0.898 43 H 0.167 0.833 44 H 0.162 0.838 45 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 0.708 8.343 13.960 16.278 hybrid contribution -0.302 -0.001 -1.036 1.079 sum 0.406 8.342 12.923 15.387 Atomic orbital electron populations 1.21675 0.92501 1.02603 1.02659 1.22386 0.98034 1.01516 0.95165 0.87899 1.25066 0.75879 0.85090 0.88882 1.90383 1.52168 1.68136 1.21920 1.22940 1.01272 0.98942 0.98931 1.22518 0.97118 1.01779 0.93580 1.21732 0.98313 0.96447 0.92053 0.88703 1.21833 1.02833 0.98954 0.94212 1.20341 0.77683 0.88195 0.84039 1.90659 1.52910 1.13819 1.83458 1.48325 1.65500 1.04537 1.14287 1.19303 0.95874 0.92392 0.79616 1.21418 0.94750 1.36420 1.04089 0.92355 1.24925 0.96123 0.95251 0.97664 1.69932 1.23216 1.37629 1.22421 0.86514 0.83101 0.77654 0.80256 1.20635 1.21120 1.19875 1.19880 0.88095 0.82493 1.02914 1.23309 0.99328 1.04034 0.81065 1.21710 0.92662 1.05791 1.01229 1.21829 1.00814 1.07403 0.93144 1.23928 0.83053 1.05280 0.99608 1.83988 1.27140 1.66168 1.30069 0.92187 0.92184 0.91247 0.89295 0.87768 0.88897 0.91231 0.88978 0.89256 0.94990 0.93786 0.92690 0.86703 0.89781 0.83267 0.83804 0.78591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 9.08 37.16 0.34 -0.99 16 2 C -0.15 -1.61 3.01 -90.73 -0.27 -1.88 16 3 H 0.10 1.01 7.83 -51.93 -0.41 0.60 16 4 C 0.38 4.46 7.18 -28.11 -0.20 4.25 16 5 O -0.45 -6.65 17.99 6.00 0.11 -6.55 16 6 C -0.18 -1.94 6.72 -26.32 -0.18 -2.11 16 7 C -0.11 -1.38 5.80 -24.69 -0.14 -1.52 16 8 C -0.07 -0.82 2.00 -88.91 -0.18 -1.00 16 9 H 0.09 1.30 7.60 -51.93 -0.39 0.90 16 10 C -0.14 -1.86 3.61 -27.88 -0.10 -1.96 16 11 C 0.51 9.69 7.49 -10.98 -0.08 9.61 16 12 O -0.53 -12.16 14.37 5.55 0.08 -12.08 16 13 N -0.59 -11.69 2.44 -176.43 -0.43 -12.12 16 14 C 0.25 6.12 5.16 -5.20 -0.03 6.09 16 15 C -0.53 -14.21 9.39 -34.44 -0.32 -14.53 16 16 H 0.06 1.55 7.81 -52.48 -0.41 1.14 16 17 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 18 N -0.89 -25.76 13.29 55.43 0.74 -25.02 16 19 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16 20 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 21 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 23 C 0.19 2.91 5.75 -5.19 -0.03 2.88 16 24 C -0.03 -0.39 6.86 -35.63 -0.24 -0.63 16 25 C -0.19 -2.89 10.81 -39.70 -0.43 -3.32 16 26 C -0.21 -2.71 10.91 -39.70 -0.43 -3.14 16 27 C -0.05 -0.59 12.09 29.42 0.36 -0.24 16 28 O -0.18 -2.43 9.58 5.71 0.05 -2.38 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.09 1.33 7.37 -51.92 -0.38 0.95 16 35 H 0.07 0.83 7.96 -51.93 -0.41 0.41 16 36 H 0.09 1.16 6.83 -51.93 -0.35 0.80 16 37 H 0.09 1.03 7.40 -51.93 -0.38 0.65 16 38 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 39 H 0.04 1.25 7.42 -51.93 -0.39 0.87 16 40 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 41 H 0.11 1.72 8.07 -51.93 -0.42 1.30 16 42 H 0.08 1.03 6.43 -51.93 -0.33 0.70 16 43 H 0.15 2.22 8.06 -52.48 -0.42 1.80 16 44 H 0.14 1.50 8.06 -52.49 -0.42 1.08 16 45 H 0.20 1.50 8.06 -52.49 -0.42 1.07 16 LS Contribution 375.82 15.07 5.66 5.66 Total: -1.00 -32.88 375.82 -7.68 -40.55 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -6.82 Total: 2.68 kcal Atomic # 6 Polarization: -4.82 SS G_CDS: -2.05 Total: -6.87 kcal Atomic # 7 Polarization: -37.45 SS G_CDS: 0.31 Total: -37.14 kcal Atomic # 8 Polarization: -21.25 SS G_CDS: 0.24 Total: -21.01 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.88 -7.68 -40.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279669079.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.179 kcal (2) G-P(sol) polarization free energy of solvation -32.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds