Wall clock time and date at job start Tue Mar 31 2020 13:32:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.99954 * 2 1 4 4 C 1.51447 * 109.98747 * 121.29710 * 2 1 3 5 5 O 1.20754 * 126.33895 * 298.96862 * 4 2 1 6 6 C 1.51839 * 107.31731 * 118.99207 * 4 2 1 7 7 C 1.54892 * 104.43372 * 23.78811 * 6 4 2 8 8 C 1.54278 * 109.98196 * 238.71641 * 2 1 3 9 9 H 1.09006 * 110.56907 * 336.23565 * 8 2 1 10 10 C 1.52996 * 110.57254 * 98.95626 * 8 2 1 11 11 C 1.50702 * 109.47159 * 184.99785 * 10 8 2 12 12 O 1.21283 * 120.00262 * 0.02562 * 11 10 8 13 13 N 1.34777 * 119.99928 * 179.72352 * 11 10 8 14 14 C 1.46499 * 120.00199 * 180.27479 * 13 11 10 15 15 C 1.50697 * 109.46949 * 90.00203 * 14 13 11 16 16 H 1.08004 * 120.00186 * 0.02562 * 15 14 13 17 17 C 1.37881 * 120.00081 * 180.02562 * 15 14 13 18 18 N 1.31519 * 120.00096 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 120.00103 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.46956 * 89.99765 * 19 17 15 21 21 H 1.48497 * 109.47226 * 210.00189 * 19 17 15 22 22 H 1.48501 * 109.47027 * 329.99834 * 19 17 15 23 23 C 1.46506 * 120.00264 * 0.28128 * 13 11 10 24 24 C 1.50699 * 109.47106 * 89.99354 * 23 13 11 25 25 C 1.34513 * 125.78754 * 90.00726 * 24 23 13 26 26 C 1.41383 * 106.84275 * 180.02562 * 25 24 23 27 27 C 1.34517 * 106.83951 * 359.97438 * 26 25 24 28 28 O 1.34301 * 125.79267 * 269.69443 * 24 23 13 29 29 H 1.09002 * 109.46857 * 181.29036 * 1 2 3 30 30 H 1.08998 * 109.46727 * 301.28363 * 1 2 3 31 31 H 1.08990 * 109.47437 * 61.28641 * 1 2 3 32 32 H 1.08997 * 110.44555 * 142.52948 * 6 4 2 33 33 H 1.08998 * 110.44159 * 264.92632 * 6 4 2 34 34 H 1.09007 * 110.83448 * 204.16674 * 7 6 4 35 35 H 1.08997 * 110.83440 * 80.58790 * 7 6 4 36 36 H 1.09004 * 109.47066 * 64.99988 * 10 8 2 37 37 H 1.08994 * 109.47405 * 304.99818 * 10 8 2 38 38 H 1.09001 * 109.47567 * 210.00057 * 14 13 11 39 39 H 1.09005 * 109.47076 * 330.00563 * 14 13 11 40 40 H 0.96991 * 119.99957 * 180.02562 * 18 17 15 41 41 H 1.08994 * 109.46996 * 209.99677 * 23 13 11 42 42 H 1.09001 * 109.46578 * 329.99540 * 23 13 11 43 43 H 1.08004 * 126.57763 * 359.95806 * 25 24 23 44 44 H 1.07999 * 126.58037 * 179.97438 * 26 25 24 45 45 H 1.07996 * 125.79357 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0477 -0.7393 1.2161 5 8 1.8495 -0.4451 2.3704 6 6 2.8625 -1.9186 0.7152 7 6 3.3052 -1.5045 -0.7101 8 6 2.0572 -0.7529 -1.2391 9 1 1.3103 -1.4570 -1.6059 10 6 2.4505 0.2335 -2.3405 11 6 2.8448 -0.5281 -3.5797 12 8 2.8138 -1.7406 -3.5818 13 7 3.2261 0.1382 -4.6874 14 6 3.6036 -0.6021 -5.8940 15 6 2.3837 -0.8211 -6.7512 16 1 1.4233 -0.4461 -6.4296 17 6 2.4936 -1.5004 -7.9460 18 7 3.6630 -1.9575 -8.3374 19 14 0.9815 -1.7713 -9.0090 20 1 0.8308 -0.6357 -9.9539 21 1 1.1341 -3.0349 -9.7738 22 1 -0.2224 -1.8586 -8.1440 23 6 3.2631 1.6027 -4.6851 24 6 4.6251 2.0701 -4.2407 25 6 5.6766 2.3072 -5.0453 26 6 6.7421 2.7242 -4.2149 27 6 6.2779 2.7175 -2.9524 28 8 4.9933 2.3261 -2.9748 29 1 -0.3633 -1.0274 0.0231 30 1 -0.3633 0.5336 0.8782 31 1 -0.3634 0.4937 -0.9012 32 1 3.7321 -2.0787 1.3525 33 1 2.2477 -2.8180 0.6787 34 1 3.5168 -2.3823 -1.3208 35 1 4.1692 -0.8411 -0.6703 36 1 3.2920 0.8386 -2.0028 37 1 1.6042 0.8821 -2.5666 38 1 4.3435 -0.0305 -6.4544 39 1 4.0269 -1.5660 -5.6113 40 1 3.7403 -2.4350 -9.1781 41 1 3.0620 1.9729 -5.6903 42 1 2.5065 1.9841 -3.9994 43 1 5.7023 2.1987 -6.1196 44 1 7.7378 2.9959 -4.5330 45 1 6.8412 2.9852 -2.0708 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279669079.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:19 Heat of formation + Delta-G solvation = -90.422567 kcal Electronic energy + Delta-G solvation = -27450.795095 eV Core-core repulsion = 23626.809785 eV Total energy + Delta-G solvation = -3823.985310 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.40858 -41.31201 -40.36962 -37.77141 -36.72300 -34.84171 -33.82579 -32.46268 -31.94354 -31.37251 -29.21302 -26.78329 -26.23433 -25.56206 -24.27227 -22.59180 -21.79964 -21.49067 -20.12421 -19.86920 -18.80171 -18.19330 -17.74172 -17.38258 -17.00416 -16.72529 -16.53218 -16.20392 -15.99755 -15.51813 -15.26333 -14.76208 -14.61448 -14.34895 -14.27495 -14.01163 -13.72328 -13.68483 -13.52731 -13.38752 -13.28881 -13.09676 -12.95174 -12.69057 -12.66340 -12.53221 -12.27960 -12.18646 -11.88886 -11.73066 -11.60144 -11.51539 -10.79687 -10.61321 -10.60263 -10.29919 -9.60828 -9.33730 -8.19411 -6.33439 0.79461 0.90426 1.39757 1.42313 1.52244 1.71787 1.83812 2.17680 2.37982 2.51608 3.11324 3.12895 3.44979 3.61055 3.80139 3.84585 3.99604 4.14595 4.19731 4.22834 4.26177 4.34416 4.40261 4.50480 4.54041 4.59380 4.64383 4.79921 4.89309 4.95492 4.96371 5.00138 5.05552 5.08238 5.09541 5.22705 5.26108 5.27710 5.30898 5.44280 5.56166 5.65094 5.83844 6.09036 6.25661 6.47209 6.71231 6.79230 7.32231 7.50663 8.88020 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.009984 B = 0.004506 C = 0.003414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2803.817183 B = 6212.906121 C = 8198.460356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.140 4.140 3 H 0.122 0.878 4 C 0.380 3.620 5 O -0.481 6.481 6 C -0.177 4.177 7 C -0.112 4.112 8 C -0.064 4.064 9 H 0.079 0.921 10 C -0.123 4.123 11 C 0.501 3.499 12 O -0.581 6.581 13 N -0.601 5.601 14 C 0.266 3.734 15 C -0.538 4.538 16 H 0.059 0.941 17 C 0.009 3.991 18 N -0.929 5.929 19 Si 0.965 3.035 20 H -0.265 1.265 21 H -0.286 1.286 22 H -0.270 1.270 23 C 0.190 3.810 24 C -0.041 4.041 25 C -0.214 4.214 26 C -0.231 4.231 27 C -0.034 4.034 28 O -0.179 6.179 29 H 0.056 0.944 30 H 0.064 0.936 31 H 0.080 0.920 32 H 0.100 0.900 33 H 0.112 0.888 34 H 0.065 0.935 35 H 0.075 0.925 36 H 0.109 0.891 37 H 0.118 0.882 38 H 0.019 0.981 39 H -0.005 1.005 40 H 0.265 0.735 41 H 0.111 0.889 42 H 0.122 0.878 43 H 0.137 0.863 44 H 0.164 0.836 45 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.068 11.023 14.729 18.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.159 4.159 3 H 0.140 0.860 4 C 0.258 3.742 5 O -0.357 6.357 6 C -0.215 4.215 7 C -0.150 4.150 8 C -0.083 4.083 9 H 0.097 0.903 10 C -0.163 4.163 11 C 0.291 3.709 12 O -0.461 6.461 13 N -0.332 5.332 14 C 0.145 3.855 15 C -0.577 4.577 16 H 0.078 0.922 17 C -0.190 4.190 18 N -0.569 5.569 19 Si 0.790 3.210 20 H -0.190 1.190 21 H -0.211 1.211 22 H -0.195 1.195 23 C 0.067 3.933 24 C -0.092 4.092 25 C -0.234 4.234 26 C -0.250 4.250 27 C -0.101 4.101 28 O -0.075 6.075 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.099 0.901 32 H 0.119 0.881 33 H 0.130 0.870 34 H 0.084 0.916 35 H 0.093 0.907 36 H 0.127 0.873 37 H 0.136 0.864 38 H 0.037 0.963 39 H 0.013 0.987 40 H 0.074 0.926 41 H 0.129 0.871 42 H 0.139 0.861 43 H 0.154 0.846 44 H 0.181 0.819 45 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -0.173 10.413 15.420 18.608 hybrid contribution 0.086 -0.628 -1.476 1.607 sum -0.088 9.785 13.944 17.035 Atomic orbital electron populations 1.21702 0.91619 1.02716 1.03455 1.22293 0.98629 1.01851 0.93152 0.86042 1.25216 0.75227 0.85064 0.88672 1.90384 1.53394 1.68894 1.22989 1.22908 1.01762 0.98948 0.97834 1.22441 0.97491 1.00889 0.94149 1.21666 0.97952 0.96199 0.92504 0.90261 1.21820 1.04375 0.98784 0.91278 1.21367 0.76392 0.88012 0.85132 1.90636 1.54787 1.16246 1.84401 1.48280 1.65428 1.06458 1.12990 1.18677 0.94835 0.90644 0.81352 1.21719 0.95257 1.36223 1.04489 0.92243 1.25823 0.99088 0.94927 0.99144 1.70061 1.25421 1.38464 1.22993 0.85453 0.79227 0.77843 0.78520 1.18975 1.21124 1.19473 1.20046 0.89726 0.79538 1.03996 1.23046 0.99099 1.05356 0.81747 1.21893 0.94050 1.06330 1.01169 1.22120 1.01332 1.08130 0.93418 1.24795 0.82064 1.02568 1.00684 1.83974 1.28202 1.66213 1.29093 0.92523 0.91743 0.90085 0.88148 0.86957 0.91646 0.90668 0.87274 0.86365 0.96315 0.98668 0.92574 0.87093 0.86054 0.84551 0.81871 0.74206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.30 9.08 71.98 0.65 -1.65 16 2 C -0.14 -2.58 3.01 -10.87 -0.03 -2.62 16 3 H 0.12 1.87 7.83 -2.39 -0.02 1.85 16 4 C 0.38 8.26 7.18 29.70 0.21 8.47 16 5 O -0.48 -13.27 17.99 -1.43 -0.03 -13.30 16 6 C -0.18 -3.50 6.72 30.86 0.21 -3.30 16 7 C -0.11 -2.67 5.80 31.92 0.19 -2.49 16 8 C -0.06 -1.49 2.00 -9.68 -0.02 -1.51 16 9 H 0.08 2.12 7.60 -2.38 -0.02 2.11 16 10 C -0.12 -3.04 3.61 29.85 0.11 -2.93 16 11 C 0.50 19.12 7.49 87.66 0.66 19.77 16 12 O -0.58 -27.64 14.37 -3.04 -0.04 -27.68 16 13 N -0.60 -23.94 2.44 -830.49 -2.03 -25.97 16 14 C 0.27 13.84 5.16 85.63 0.44 14.28 16 15 C -0.54 -29.70 9.39 25.60 0.24 -29.46 16 16 H 0.06 3.19 7.81 -2.91 -0.02 3.17 16 17 C 0.01 0.51 5.46 84.66 0.46 0.97 16 18 N -0.93 -55.31 13.29 21.45 0.28 -55.02 16 19 Si 0.96 43.69 29.54 68.60 2.03 45.71 16 20 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 21 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 22 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 23 C 0.19 5.61 5.75 85.63 0.49 6.10 16 24 C -0.04 -1.19 6.86 24.83 0.17 -1.02 16 25 C -0.21 -6.38 10.81 22.19 0.24 -6.14 16 26 C -0.23 -5.49 10.91 22.19 0.24 -5.25 16 27 C -0.03 -0.68 12.09 66.97 0.81 0.13 16 28 O -0.18 -4.41 9.58 -2.48 -0.02 -4.43 16 29 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.06 1.04 8.14 -2.39 -0.02 1.03 16 31 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.06 1.94 7.37 -2.38 -0.02 1.92 16 35 H 0.07 1.68 7.96 -2.39 -0.02 1.67 16 36 H 0.11 2.39 6.83 -2.38 -0.02 2.37 16 37 H 0.12 2.27 7.40 -2.39 -0.02 2.26 16 38 H 0.02 1.01 8.07 -2.39 -0.02 0.99 16 39 H 0.00 -0.29 7.42 -2.38 -0.02 -0.31 16 40 H 0.27 14.88 8.31 -92.72 -0.77 14.11 16 41 H 0.11 3.32 8.07 -2.39 -0.02 3.30 16 42 H 0.12 2.62 6.43 -2.39 -0.02 2.61 16 43 H 0.14 4.29 8.06 -2.91 -0.02 4.27 16 44 H 0.16 3.10 8.06 -2.91 -0.02 3.08 16 45 H 0.24 2.47 8.06 -2.91 -0.02 2.44 16 Total: -1.00 -74.75 375.82 6.24 -68.51 By element: Atomic # 1 Polarization: 17.83 SS G_CDS: 0.98 Total: 18.81 kcal Atomic # 6 Polarization: -11.71 SS G_CDS: 5.07 Total: -6.64 kcal Atomic # 7 Polarization: -79.25 SS G_CDS: -1.74 Total: -80.99 kcal Atomic # 8 Polarization: -45.31 SS G_CDS: -0.09 Total: -45.41 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.71 kcal Total: -74.75 6.24 -68.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279669079.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.916 kcal (2) G-P(sol) polarization free energy of solvation -74.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds