Wall clock time and date at job start Tue Mar 31 2020 13:32:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 109.97056 * 2 1 4 4 C 1.51448 * 109.99009 * 121.27295 * 2 1 3 5 5 O 1.20763 * 126.33632 * 299.72852 * 4 2 1 6 6 C 1.51839 * 107.32036 * 119.74508 * 4 2 1 7 7 C 1.54887 * 104.54239 * 336.15167 * 6 4 2 8 8 C 1.54286 * 110.01818 * 238.71094 * 2 1 3 9 9 H 1.08997 * 110.56955 * 145.18546 * 8 2 1 10 10 C 1.52996 * 110.57062 * 22.46867 * 8 2 1 11 11 C 1.50697 * 109.47200 * 175.00410 * 10 8 2 12 12 O 1.21274 * 120.00062 * 359.97438 * 11 10 8 13 13 N 1.34785 * 119.99830 * 180.02562 * 11 10 8 14 14 C 1.46494 * 119.99413 * 179.97438 * 13 11 10 15 15 C 1.50705 * 109.47403 * 90.00065 * 14 13 11 16 16 H 1.08000 * 119.99517 * 359.97438 * 15 14 13 17 17 C 1.37877 * 120.00219 * 179.97438 * 15 14 13 18 18 N 1.31513 * 119.99761 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00021 * 179.97438 * 17 15 14 20 20 H 1.48509 * 109.46994 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47302 * 119.99943 * 19 17 15 22 22 H 1.48492 * 109.47207 * 240.00262 * 19 17 15 23 23 C 1.46499 * 119.99933 * 359.97438 * 13 11 10 24 24 C 1.50703 * 109.47000 * 90.00139 * 23 13 11 25 25 C 1.34514 * 125.78625 * 89.99977 * 24 23 13 26 26 C 1.41383 * 106.83845 * 179.97438 * 25 24 23 27 27 C 1.34510 * 106.84125 * 359.97438 * 26 25 24 28 28 O 1.34296 * 125.78862 * 269.69046 * 24 23 13 29 29 H 1.09000 * 109.47222 * 300.17543 * 1 2 3 30 30 H 1.08996 * 109.47802 * 60.18409 * 1 2 3 31 31 H 1.09002 * 109.46848 * 180.18065 * 1 2 3 32 32 H 1.09002 * 110.44159 * 94.95139 * 6 4 2 33 33 H 1.09001 * 110.44267 * 217.34901 * 6 4 2 34 34 H 1.09000 * 110.83937 * 155.89994 * 7 6 4 35 35 H 1.09004 * 110.83085 * 279.47416 * 7 6 4 36 36 H 1.09007 * 109.47117 * 295.00429 * 10 8 2 37 37 H 1.09003 * 109.47317 * 55.00020 * 10 8 2 38 38 H 1.09002 * 109.46913 * 209.99521 * 14 13 11 39 39 H 1.08998 * 109.47809 * 329.99810 * 14 13 11 40 40 H 0.97002 * 119.99792 * 180.02562 * 18 17 15 41 41 H 1.09004 * 109.46658 * 210.00329 * 23 13 11 42 42 H 1.08997 * 109.47027 * 330.00121 * 23 13 11 43 43 H 1.08006 * 126.58063 * 0.03412 * 25 24 23 44 44 H 1.08002 * 126.58052 * 180.02562 * 26 25 24 45 45 H 1.07999 * 125.79176 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9022 1.0245 0.0000 4 6 2.0477 -0.7388 1.2164 5 8 1.8389 -0.4515 2.3707 6 6 2.8780 -1.9074 0.7161 7 6 2.3390 -2.1856 -0.7091 8 6 2.0581 -0.7529 -1.2388 9 1 2.9764 -0.2929 -1.6038 10 6 0.9984 -0.7827 -2.3420 11 6 1.5803 -1.4138 -3.5806 12 8 2.7295 -1.8010 -3.5811 13 7 0.8238 -1.5468 -4.6881 14 6 1.3897 -2.1597 -5.8923 15 6 1.1529 -3.6477 -5.8575 16 1 0.6331 -4.0922 -5.0216 17 6 1.5997 -4.4413 -6.8926 18 7 2.2330 -3.8999 -7.9101 19 14 1.3067 -6.2856 -6.8490 20 1 0.5778 -6.6418 -5.6051 21 1 0.4978 -6.6864 -8.0281 22 1 2.6110 -6.9949 -6.8793 23 6 -0.5643 -1.0784 -4.6876 24 6 -0.6094 0.3598 -5.1353 25 6 -0.7432 0.7848 -6.4045 26 6 -0.7373 2.1981 -6.3660 27 6 -0.6009 2.5522 -5.0756 28 8 -0.5286 1.4346 -4.3342 29 1 -0.3634 0.5165 0.8884 30 1 -0.3634 0.5109 -0.8916 31 1 -0.3633 -1.0277 0.0032 32 1 3.9330 -1.6360 0.6778 33 1 2.7330 -2.7787 1.3548 34 1 3.0922 -2.6857 -1.3178 35 1 1.4205 -2.7711 -0.6686 36 1 0.1405 -1.3654 -2.0061 37 1 0.6803 0.2351 -2.5679 38 1 0.9106 -1.7362 -6.7750 39 1 2.4611 -1.9632 -5.9309 40 1 2.5470 -4.4582 -8.6385 41 1 -1.1544 -1.6902 -5.3701 42 1 -0.9745 -1.1586 -3.6809 43 1 -0.8379 0.1652 -7.2841 44 1 -0.8262 2.8653 -7.2106 45 1 -0.5595 3.5636 -4.6992 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279669080.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:23 Heat of formation + Delta-G solvation = -68.093283 kcal Electronic energy + Delta-G solvation = -27573.074585 eV Core-core repulsion = 23750.057545 eV Total energy + Delta-G solvation = -3823.017039 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.36406 -40.30796 -38.97795 -36.74966 -35.18488 -32.87625 -32.72911 -31.68348 -30.31226 -30.07528 -27.45891 -25.59628 -25.15212 -24.76484 -22.67177 -21.52513 -20.59114 -20.32019 -18.93602 -18.33964 -17.32362 -16.98843 -16.36160 -16.11135 -15.78782 -15.64048 -15.10096 -14.95301 -14.74530 -14.37455 -14.03165 -13.70019 -13.29878 -13.13162 -12.82937 -12.66018 -12.59760 -12.56143 -12.41234 -12.15145 -12.02683 -11.85056 -11.59885 -11.35251 -11.30906 -10.95374 -10.88618 -10.65279 -10.57354 -10.42054 -10.21780 -9.75422 -9.68295 -9.44366 -8.92202 -8.48696 -8.34111 -7.83008 -6.08994 -4.14026 1.84145 1.86430 2.79259 3.09265 3.26603 3.34390 3.36834 3.44233 3.89133 4.04485 4.38108 4.44308 4.66597 4.78417 4.89067 5.06839 5.07182 5.16962 5.19640 5.21888 5.26030 5.32215 5.37059 5.43859 5.54481 5.60302 5.65504 5.75985 5.83641 5.87541 5.91947 5.97741 6.03175 6.05102 6.15268 6.27117 6.35688 6.40841 6.68073 6.98266 7.28149 7.40282 7.40796 7.46597 7.87114 8.17428 8.29365 8.84933 9.01674 9.51530 10.99157 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.009200 B = 0.004919 C = 0.003410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3042.823252 B = 5691.232312 C = 8210.352945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.151 4.151 3 H 0.100 0.900 4 C 0.375 3.625 5 O -0.453 6.453 6 C -0.184 4.184 7 C -0.112 4.112 8 C -0.066 4.066 9 H 0.091 0.909 10 C -0.138 4.138 11 C 0.509 3.491 12 O -0.532 6.532 13 N -0.595 5.595 14 C 0.246 3.754 15 C -0.527 4.527 16 H 0.059 0.941 17 C 0.062 3.938 18 N -0.893 5.893 19 Si 0.897 3.103 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.283 1.283 23 C 0.191 3.809 24 C -0.026 4.026 25 C -0.194 4.194 26 C -0.213 4.213 27 C -0.051 4.051 28 O -0.177 6.177 29 H 0.058 0.942 30 H 0.073 0.927 31 H 0.060 0.940 32 H 0.104 0.896 33 H 0.089 0.911 34 H 0.094 0.906 35 H 0.070 0.930 36 H 0.091 0.909 37 H 0.094 0.906 38 H 0.032 0.968 39 H 0.044 0.956 40 H 0.263 0.737 41 H 0.115 0.885 42 H 0.084 0.916 43 H 0.149 0.851 44 H 0.144 0.856 45 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.473 10.712 10.152 16.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.170 4.170 3 H 0.118 0.882 4 C 0.251 3.749 5 O -0.326 6.326 6 C -0.222 4.222 7 C -0.149 4.149 8 C -0.085 4.085 9 H 0.109 0.891 10 C -0.178 4.178 11 C 0.296 3.704 12 O -0.409 6.409 13 N -0.326 5.326 14 C 0.128 3.872 15 C -0.566 4.566 16 H 0.077 0.923 17 C -0.140 4.140 18 N -0.532 5.532 19 Si 0.725 3.275 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.209 1.209 23 C 0.066 3.934 24 C -0.077 4.077 25 C -0.214 4.214 26 C -0.232 4.232 27 C -0.119 4.119 28 O -0.074 6.074 29 H 0.077 0.923 30 H 0.092 0.908 31 H 0.079 0.921 32 H 0.122 0.878 33 H 0.108 0.892 34 H 0.113 0.887 35 H 0.089 0.911 36 H 0.109 0.891 37 H 0.112 0.888 38 H 0.050 0.950 39 H 0.062 0.938 40 H 0.072 0.928 41 H 0.133 0.867 42 H 0.102 0.898 43 H 0.167 0.833 44 H 0.162 0.838 45 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -5.835 10.564 10.890 16.255 hybrid contribution -0.160 -0.785 -0.646 1.029 sum -5.995 9.779 10.244 15.379 Atomic orbital electron populations 1.21765 0.92600 1.02597 1.02805 1.22336 0.98202 1.01241 0.95213 0.88167 1.25090 0.76405 0.84550 0.88871 1.90385 1.52459 1.67818 1.21938 1.22947 1.01436 0.98726 0.99054 1.22584 1.02278 0.96604 0.93454 1.21717 0.98642 0.96077 0.92071 0.89067 1.21910 0.99478 1.02464 0.93930 1.20411 0.86383 0.79245 0.84368 1.90654 1.17621 1.49346 1.83296 1.48321 1.10779 1.58563 1.14986 1.19307 0.95523 0.92357 0.80049 1.21451 1.37378 0.92101 1.05624 0.92298 1.24925 0.94911 0.98853 0.95305 1.69944 1.38267 1.35691 1.09293 0.86464 0.78001 0.85206 0.77869 1.19772 1.20997 1.20904 1.19875 0.86038 0.84418 1.03029 1.23311 1.05379 0.89276 0.89769 1.21710 1.07253 0.94861 0.97571 1.21829 1.08250 0.95748 0.97377 1.23925 1.07153 0.90098 0.90683 1.83984 1.71108 1.14120 1.38144 0.92296 0.90812 0.92091 0.87800 0.89239 0.88747 0.91129 0.89085 0.88809 0.94992 0.93806 0.92752 0.86717 0.89807 0.83275 0.83811 0.78580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 7.99 37.15 0.30 -1.04 16 2 C -0.15 -1.59 3.36 -90.73 -0.30 -1.90 16 3 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 4 C 0.38 4.47 7.18 -28.10 -0.20 4.27 16 5 O -0.45 -6.68 17.99 6.00 0.11 -6.57 16 6 C -0.18 -1.97 6.71 -26.33 -0.18 -2.15 16 7 C -0.11 -1.39 5.82 -24.51 -0.14 -1.54 16 8 C -0.07 -0.82 2.38 -88.72 -0.21 -1.03 16 9 H 0.09 1.23 7.89 -51.93 -0.41 0.82 16 10 C -0.14 -1.84 2.45 -27.89 -0.07 -1.91 16 11 C 0.51 9.65 7.49 -10.98 -0.08 9.56 16 12 O -0.53 -12.17 14.38 5.56 0.08 -12.09 16 13 N -0.59 -11.66 2.44 -176.43 -0.43 -12.09 16 14 C 0.25 6.10 5.16 -5.19 -0.03 6.07 16 15 C -0.53 -14.12 9.39 -34.44 -0.32 -14.44 16 16 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 17 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 18 N -0.89 -25.73 13.29 55.43 0.74 -25.00 16 19 Si 0.90 21.11 29.54 -169.99 -5.02 16.09 16 20 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 23 C 0.19 2.89 5.74 -5.19 -0.03 2.87 16 24 C -0.03 -0.38 6.85 -35.62 -0.24 -0.63 16 25 C -0.19 -2.88 10.81 -39.70 -0.43 -3.31 16 26 C -0.21 -2.69 10.91 -39.70 -0.43 -3.13 16 27 C -0.05 -0.59 12.09 29.41 0.36 -0.23 16 28 O -0.18 -2.40 9.55 5.71 0.05 -2.34 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.64 6.60 -51.93 -0.34 0.30 16 31 H 0.06 0.57 7.62 -51.93 -0.40 0.17 16 32 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.09 1.39 7.38 -51.93 -0.38 1.01 16 35 H 0.07 0.85 7.97 -51.93 -0.41 0.44 16 36 H 0.09 1.06 6.10 -51.93 -0.32 0.75 16 37 H 0.09 1.17 6.16 -51.93 -0.32 0.85 16 38 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 39 H 0.04 1.25 7.42 -51.93 -0.39 0.86 16 40 H 0.26 7.16 8.31 -40.82 -0.34 6.83 16 41 H 0.11 1.71 8.07 -51.93 -0.42 1.30 16 42 H 0.08 1.02 6.44 -51.93 -0.33 0.69 16 43 H 0.15 2.22 8.06 -52.48 -0.42 1.79 16 44 H 0.14 1.49 8.06 -52.49 -0.42 1.07 16 45 H 0.20 1.46 8.06 -52.49 -0.42 1.04 16 LS Contribution 370.90 15.07 5.59 5.59 Total: -1.00 -32.88 370.90 -7.65 -40.52 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -6.65 Total: 2.82 kcal Atomic # 6 Polarization: -4.80 SS G_CDS: -2.12 Total: -6.92 kcal Atomic # 7 Polarization: -37.39 SS G_CDS: 0.31 Total: -37.09 kcal Atomic # 8 Polarization: -21.25 SS G_CDS: 0.24 Total: -21.01 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.88 -7.65 -40.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279669080.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.570 kcal (2) G-P(sol) polarization free energy of solvation -32.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds