Wall clock time and date at job start Tue Mar 31 2020 13:32:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 109.97056 * 2 1 4 4 C 1.51448 * 109.99009 * 121.27295 * 2 1 3 5 5 O 1.20763 * 126.33632 * 299.72852 * 4 2 1 6 6 C 1.51839 * 107.32036 * 119.74508 * 4 2 1 7 7 C 1.54887 * 104.54239 * 336.15167 * 6 4 2 8 8 C 1.54286 * 110.01818 * 238.71094 * 2 1 3 9 9 H 1.08997 * 110.56955 * 145.18546 * 8 2 1 10 10 C 1.52996 * 110.57062 * 22.46867 * 8 2 1 11 11 C 1.50697 * 109.47200 * 175.00410 * 10 8 2 12 12 O 1.21274 * 120.00062 * 359.97438 * 11 10 8 13 13 N 1.34785 * 119.99830 * 180.02562 * 11 10 8 14 14 C 1.46494 * 119.99413 * 179.97438 * 13 11 10 15 15 C 1.50705 * 109.47403 * 90.00065 * 14 13 11 16 16 H 1.08000 * 119.99517 * 359.97438 * 15 14 13 17 17 C 1.37877 * 120.00219 * 179.97438 * 15 14 13 18 18 N 1.31513 * 119.99761 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00021 * 179.97438 * 17 15 14 20 20 H 1.48509 * 109.46994 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47302 * 119.99943 * 19 17 15 22 22 H 1.48492 * 109.47207 * 240.00262 * 19 17 15 23 23 C 1.46499 * 119.99933 * 359.97438 * 13 11 10 24 24 C 1.50703 * 109.47000 * 90.00139 * 23 13 11 25 25 C 1.34514 * 125.78625 * 89.99977 * 24 23 13 26 26 C 1.41383 * 106.83845 * 179.97438 * 25 24 23 27 27 C 1.34510 * 106.84125 * 359.97438 * 26 25 24 28 28 O 1.34296 * 125.78862 * 269.69046 * 24 23 13 29 29 H 1.09000 * 109.47222 * 300.17543 * 1 2 3 30 30 H 1.08996 * 109.47802 * 60.18409 * 1 2 3 31 31 H 1.09002 * 109.46848 * 180.18065 * 1 2 3 32 32 H 1.09002 * 110.44159 * 94.95139 * 6 4 2 33 33 H 1.09001 * 110.44267 * 217.34901 * 6 4 2 34 34 H 1.09000 * 110.83937 * 155.89994 * 7 6 4 35 35 H 1.09004 * 110.83085 * 279.47416 * 7 6 4 36 36 H 1.09007 * 109.47117 * 295.00429 * 10 8 2 37 37 H 1.09003 * 109.47317 * 55.00020 * 10 8 2 38 38 H 1.09002 * 109.46913 * 209.99521 * 14 13 11 39 39 H 1.08998 * 109.47809 * 329.99810 * 14 13 11 40 40 H 0.97002 * 119.99792 * 180.02562 * 18 17 15 41 41 H 1.09004 * 109.46658 * 210.00329 * 23 13 11 42 42 H 1.08997 * 109.47027 * 330.00121 * 23 13 11 43 43 H 1.08006 * 126.58063 * 0.03412 * 25 24 23 44 44 H 1.08002 * 126.58052 * 180.02562 * 26 25 24 45 45 H 1.07999 * 125.79176 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9022 1.0245 0.0000 4 6 2.0477 -0.7388 1.2164 5 8 1.8389 -0.4515 2.3707 6 6 2.8780 -1.9074 0.7161 7 6 2.3390 -2.1856 -0.7091 8 6 2.0581 -0.7529 -1.2388 9 1 2.9764 -0.2929 -1.6038 10 6 0.9984 -0.7827 -2.3420 11 6 1.5803 -1.4138 -3.5806 12 8 2.7295 -1.8010 -3.5811 13 7 0.8238 -1.5468 -4.6881 14 6 1.3897 -2.1597 -5.8923 15 6 1.1529 -3.6477 -5.8575 16 1 0.6331 -4.0922 -5.0216 17 6 1.5997 -4.4413 -6.8926 18 7 2.2330 -3.8999 -7.9101 19 14 1.3067 -6.2856 -6.8490 20 1 0.5778 -6.6418 -5.6051 21 1 0.4978 -6.6864 -8.0281 22 1 2.6110 -6.9949 -6.8793 23 6 -0.5643 -1.0784 -4.6876 24 6 -0.6094 0.3598 -5.1353 25 6 -0.7432 0.7848 -6.4045 26 6 -0.7373 2.1981 -6.3660 27 6 -0.6009 2.5522 -5.0756 28 8 -0.5286 1.4346 -4.3342 29 1 -0.3634 0.5165 0.8884 30 1 -0.3634 0.5109 -0.8916 31 1 -0.3633 -1.0277 0.0032 32 1 3.9330 -1.6360 0.6778 33 1 2.7330 -2.7787 1.3548 34 1 3.0922 -2.6857 -1.3178 35 1 1.4205 -2.7711 -0.6686 36 1 0.1405 -1.3654 -2.0061 37 1 0.6803 0.2351 -2.5679 38 1 0.9106 -1.7362 -6.7750 39 1 2.4611 -1.9632 -5.9309 40 1 2.5470 -4.4582 -8.6385 41 1 -1.1544 -1.6902 -5.3701 42 1 -0.9745 -1.1586 -3.6809 43 1 -0.8379 0.1652 -7.2841 44 1 -0.8262 2.8653 -7.2106 45 1 -0.5595 3.5636 -4.6992 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279669080.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:22 Heat of formation + Delta-G solvation = -86.957332 kcal Electronic energy + Delta-G solvation = -27573.892591 eV Core-core repulsion = 23750.057545 eV Total energy + Delta-G solvation = -3823.835046 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.39789 -41.38958 -40.35379 -37.85377 -36.73907 -34.83895 -33.81760 -32.63424 -31.63968 -31.18921 -29.16169 -26.77997 -26.31450 -25.85380 -24.38076 -22.57782 -21.72746 -21.37678 -20.07159 -19.49235 -18.77786 -18.32827 -17.91019 -17.27259 -17.17816 -16.69056 -16.47225 -16.23340 -15.92466 -15.75917 -15.24430 -14.92225 -14.48783 -14.27831 -14.05156 -13.97746 -13.71088 -13.68586 -13.51303 -13.43232 -13.27748 -13.11401 -12.93606 -12.81477 -12.65871 -12.52525 -12.27945 -12.18254 -11.84449 -11.67651 -11.58851 -11.36885 -10.78678 -10.61940 -10.52422 -10.34484 -9.60112 -9.32821 -8.19339 -6.33155 0.80536 0.90608 1.39485 1.41697 1.53024 1.72723 1.84490 2.18421 2.38232 2.52372 3.11569 3.13269 3.44153 3.63871 3.80994 3.85858 4.01044 4.12456 4.19711 4.20349 4.28237 4.36589 4.40030 4.51467 4.56235 4.61294 4.68585 4.79184 4.87807 4.93071 4.97280 5.05207 5.07697 5.09311 5.11300 5.24991 5.27331 5.28040 5.36953 5.42249 5.56688 5.65962 5.84258 6.09263 6.26585 6.47536 6.71831 6.79790 7.32574 7.51236 8.88304 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.009200 B = 0.004919 C = 0.003410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3042.823252 B = 5691.232312 C = 8210.352945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.140 4.140 3 H 0.115 0.885 4 C 0.381 3.619 5 O -0.482 6.482 6 C -0.178 4.178 7 C -0.112 4.112 8 C -0.064 4.064 9 H 0.076 0.924 10 C -0.121 4.121 11 C 0.499 3.501 12 O -0.581 6.581 13 N -0.601 5.601 14 C 0.266 3.734 15 C -0.536 4.536 16 H 0.060 0.940 17 C 0.009 3.991 18 N -0.930 5.930 19 Si 0.965 3.035 20 H -0.263 1.263 21 H -0.273 1.273 22 H -0.285 1.285 23 C 0.190 3.810 24 C -0.041 4.041 25 C -0.214 4.214 26 C -0.232 4.232 27 C -0.033 4.033 28 O -0.178 6.178 29 H 0.061 0.939 30 H 0.087 0.913 31 H 0.063 0.937 32 H 0.113 0.887 33 H 0.099 0.901 34 H 0.065 0.935 35 H 0.076 0.924 36 H 0.117 0.883 37 H 0.112 0.888 38 H 0.019 0.981 39 H -0.005 1.005 40 H 0.265 0.735 41 H 0.111 0.889 42 H 0.121 0.879 43 H 0.136 0.864 44 H 0.163 0.837 45 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.318 11.657 11.840 18.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.159 4.159 3 H 0.133 0.867 4 C 0.259 3.741 5 O -0.357 6.357 6 C -0.216 4.216 7 C -0.150 4.150 8 C -0.083 4.083 9 H 0.095 0.905 10 C -0.161 4.161 11 C 0.289 3.711 12 O -0.462 6.462 13 N -0.331 5.331 14 C 0.144 3.856 15 C -0.574 4.574 16 H 0.078 0.922 17 C -0.190 4.190 18 N -0.570 5.570 19 Si 0.789 3.211 20 H -0.187 1.187 21 H -0.198 1.198 22 H -0.211 1.211 23 C 0.067 3.933 24 C -0.093 4.093 25 C -0.235 4.235 26 C -0.251 4.251 27 C -0.100 4.100 28 O -0.074 6.074 29 H 0.080 0.920 30 H 0.106 0.894 31 H 0.082 0.918 32 H 0.131 0.869 33 H 0.117 0.883 34 H 0.084 0.916 35 H 0.095 0.905 36 H 0.135 0.865 37 H 0.130 0.870 38 H 0.037 0.963 39 H 0.013 0.987 40 H 0.074 0.926 41 H 0.129 0.871 42 H 0.139 0.861 43 H 0.154 0.846 44 H 0.181 0.819 45 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -7.724 11.527 12.586 18.734 hybrid contribution 0.442 -0.984 -1.225 1.633 sum -7.282 10.543 11.361 17.125 Atomic orbital electron populations 1.21810 0.91265 1.03140 1.03677 1.22251 0.99171 1.01341 0.93119 0.86745 1.25236 0.75710 0.84515 0.88678 1.90387 1.53612 1.68666 1.23029 1.22916 1.01797 0.98938 0.97908 1.22509 1.01790 0.96643 0.94035 1.21652 0.97936 0.96175 0.92537 0.90528 1.21902 1.00081 1.03082 0.91000 1.21448 0.85782 0.78404 0.85449 1.90632 1.19912 1.51400 1.84208 1.48277 1.12756 1.58488 1.13622 1.18683 0.92748 0.92040 0.82096 1.21740 1.37008 0.93192 1.05492 0.92211 1.25817 0.94598 1.03655 0.94943 1.70070 1.39353 1.37480 1.10075 0.85408 0.77811 0.79337 0.78501 1.18705 1.19845 1.21142 1.20041 0.83315 0.84742 1.05200 1.23032 1.06910 0.89472 0.89853 1.21892 1.07670 0.96429 0.97479 1.22119 1.09178 0.94823 0.98985 1.24804 1.04041 0.91007 0.90146 1.83970 1.71052 1.14255 1.38095 0.91979 0.89431 0.91750 0.86877 0.88269 0.91642 0.90505 0.86488 0.86978 0.96311 0.98719 0.92599 0.87124 0.86081 0.84608 0.81908 0.74113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 7.99 71.98 0.58 -1.60 16 2 C -0.14 -2.57 3.36 -10.87 -0.04 -2.61 16 3 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 4 C 0.38 8.31 7.18 29.70 0.21 8.53 16 5 O -0.48 -13.37 17.99 -1.46 -0.03 -13.40 16 6 C -0.18 -3.58 6.71 30.86 0.21 -3.38 16 7 C -0.11 -2.72 5.82 32.03 0.19 -2.53 16 8 C -0.06 -1.48 2.38 -9.57 -0.02 -1.51 16 9 H 0.08 2.03 7.89 -2.39 -0.02 2.01 16 10 C -0.12 -2.98 2.45 29.85 0.07 -2.91 16 11 C 0.50 19.03 7.49 87.65 0.66 19.69 16 12 O -0.58 -27.68 14.38 -3.01 -0.04 -27.72 16 13 N -0.60 -23.89 2.44 -830.50 -2.03 -25.91 16 14 C 0.27 13.79 5.16 85.64 0.44 14.24 16 15 C -0.54 -29.48 9.39 25.60 0.24 -29.24 16 16 H 0.06 3.20 7.81 -2.91 -0.02 3.18 16 17 C 0.01 0.49 5.46 84.65 0.46 0.95 16 18 N -0.93 -55.30 13.29 21.45 0.28 -55.02 16 19 Si 0.96 43.70 29.54 68.60 2.03 45.72 16 20 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 21 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 22 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 23 C 0.19 5.58 5.74 85.63 0.49 6.07 16 24 C -0.04 -1.18 6.85 24.83 0.17 -1.01 16 25 C -0.21 -6.35 10.81 22.19 0.24 -6.11 16 26 C -0.23 -5.46 10.91 22.19 0.24 -5.22 16 27 C -0.03 -0.64 12.09 66.97 0.81 0.17 16 28 O -0.18 -4.29 9.55 -2.48 -0.02 -4.31 16 29 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.09 1.12 6.60 -2.39 -0.02 1.11 16 31 H 0.06 0.96 7.62 -2.39 -0.02 0.94 16 32 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.06 1.99 7.38 -2.39 -0.02 1.97 16 35 H 0.08 1.74 7.97 -2.38 -0.02 1.72 16 36 H 0.12 2.31 6.10 -2.38 -0.01 2.30 16 37 H 0.11 2.41 6.16 -2.39 -0.01 2.39 16 38 H 0.02 1.01 8.07 -2.39 -0.02 0.99 16 39 H -0.01 -0.33 7.42 -2.39 -0.02 -0.34 16 40 H 0.27 14.83 8.31 -92.71 -0.77 14.06 16 41 H 0.11 3.30 8.07 -2.38 -0.02 3.28 16 42 H 0.12 2.60 6.44 -2.39 -0.02 2.58 16 43 H 0.14 4.26 8.06 -2.91 -0.02 4.24 16 44 H 0.16 3.06 8.06 -2.91 -0.02 3.04 16 45 H 0.24 2.33 8.06 -2.91 -0.02 2.31 16 Total: -1.00 -74.89 370.90 6.13 -68.76 By element: Atomic # 1 Polarization: 17.38 SS G_CDS: 0.99 Total: 18.37 kcal Atomic # 6 Polarization: -11.43 SS G_CDS: 4.95 Total: -6.48 kcal Atomic # 7 Polarization: -79.19 SS G_CDS: -1.74 Total: -80.93 kcal Atomic # 8 Polarization: -45.33 SS G_CDS: -0.09 Total: -45.43 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.72 kcal Total: -74.89 6.13 -68.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279669080.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.202 kcal (2) G-P(sol) polarization free energy of solvation -74.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds