Wall clock time and date at job start Tue Mar 31 2020 13:26:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42903 * 113.99917 * 2 1 4 4 H 1.09004 * 109.44866 * 30.03708 * 3 2 1 5 5 C 1.53038 * 109.46151 * 270.07366 * 3 2 1 6 6 C 1.53631 * 109.24222 * 178.48985 * 5 3 2 7 7 N 1.46931 * 108.53995 * 54.85460 * 6 5 3 8 8 C 1.34778 * 120.62912 * 126.37204 * 7 6 5 9 9 O 1.21589 * 119.99833 * 185.53339 * 8 7 6 10 10 C 1.47534 * 119.99995 * 5.52799 * 8 7 6 11 11 C 1.39664 * 120.19970 * 53.87605 * 10 8 7 12 12 C 1.37820 * 119.92441 * 180.02562 * 11 10 8 13 13 C 1.38573 * 120.32261 * 0.02562 * 12 11 10 14 14 C 1.38031 * 120.40018 * 0.02562 * 13 12 11 15 15 C 1.38831 * 120.07269 * 359.97438 * 14 13 12 16 16 O 1.35522 * 120.16323 * 180.02562 * 15 14 13 17 17 C 1.34812 * 116.99505 * 5.41884 * 16 15 14 18 18 H 1.08002 * 120.00736 * 354.95771 * 17 16 15 19 19 C 1.38707 * 119.99838 * 174.95912 * 17 16 15 20 20 N 1.31513 * 120.00150 * 180.02562 * 19 17 16 21 21 Si 1.86801 * 119.99787 * 0.02562 * 19 17 16 22 22 H 1.48497 * 109.46944 * 89.99543 * 21 19 17 23 23 H 1.48498 * 109.47314 * 209.99949 * 21 19 17 24 24 H 1.48504 * 109.47054 * 330.00153 * 21 19 17 25 25 C 1.46926 * 118.74003 * 306.09443 * 7 6 5 26 26 H 1.08998 * 109.58729 * 173.64990 * 25 7 6 27 27 C 1.52997 * 109.58529 * 294.07350 * 25 7 6 28 28 C 1.53038 * 109.45828 * 150.00320 * 3 2 1 29 29 H 1.08996 * 109.46905 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47161 * 299.99697 * 1 2 3 31 31 H 1.08994 * 109.47499 * 59.99630 * 1 2 3 32 32 H 1.09003 * 109.49899 * 298.56388 * 5 3 2 33 33 H 1.08998 * 109.49957 * 58.63131 * 5 3 2 34 34 H 1.08997 * 109.73729 * 295.11735 * 6 5 3 35 35 H 1.08995 * 109.66072 * 174.54620 * 6 5 3 36 36 H 1.08005 * 120.03524 * 359.74375 * 11 10 8 37 37 H 1.08002 * 119.84479 * 179.97438 * 12 11 10 38 38 H 1.08000 * 119.80082 * 179.97438 * 13 12 11 39 39 H 1.08001 * 119.96073 * 179.97438 * 14 13 12 40 40 H 0.96997 * 119.99922 * 180.02562 * 20 19 17 41 41 H 1.09004 * 109.47424 * 60.00061 * 27 25 7 42 42 H 1.09004 * 109.47226 * 179.97438 * 27 25 7 43 43 H 1.08997 * 109.47294 * 300.00385 * 27 25 7 44 44 H 1.08996 * 109.50016 * 61.43574 * 28 3 2 45 45 H 1.08997 * 109.49763 * 301.33524 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9990 0.5145 5 6 2.2159 1.7720 -1.4429 6 6 2.8056 3.1906 -1.4372 7 7 4.0301 3.1843 -0.6250 8 6 5.1912 3.6462 -1.1297 9 8 6.2175 3.5436 -0.4858 10 6 5.2171 4.2763 -2.4635 11 6 4.3598 5.3397 -2.7549 12 6 4.3883 5.9237 -4.0029 13 6 5.2638 5.4608 -4.9721 14 6 6.1161 4.4100 -4.6989 15 6 6.1013 3.8095 -3.4473 16 8 6.9377 2.7780 -3.1770 17 6 7.8378 2.4548 -4.1271 18 1 7.8161 2.9550 -5.0841 19 6 8.7918 1.4799 -3.8757 20 7 9.6703 1.1649 -4.8024 21 14 8.8290 0.6143 -2.2208 22 1 7.9679 -0.5943 -2.2750 23 1 10.2233 0.2148 -1.9022 24 1 8.3251 1.5342 -1.1695 25 6 3.9632 2.6705 0.7499 26 1 4.9665 2.6292 1.1737 27 6 3.0823 3.5896 1.5985 28 6 3.3592 1.2629 0.7214 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 2.9006 1.0928 -1.9508 33 1 1.2580 1.7792 -1.9631 34 1 2.0856 3.8869 -1.0073 35 1 3.0450 3.4924 -2.4568 36 1 3.6721 5.7009 -2.0044 37 1 3.7245 6.7457 -4.2269 38 1 5.2788 5.9244 -5.9474 39 1 6.7953 4.0546 -5.4598 40 1 10.3372 0.4829 -4.6267 41 1 2.0784 3.6233 1.1751 42 1 3.0336 3.2065 2.6179 43 1 3.5068 4.5934 1.6071 44 1 4.0332 0.5885 0.1932 45 1 3.2150 0.9083 1.7419 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281752081.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:26:09 Heat of formation + Delta-G solvation = -76.825318 kcal Electronic energy + Delta-G solvation = -28090.465166 eV Core-core repulsion = 24267.069477 eV Total energy + Delta-G solvation = -3823.395689 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.45338 -39.21392 -38.07608 -36.59457 -36.29538 -32.81747 -32.46444 -31.69153 -30.28485 -29.26443 -28.05813 -26.50754 -25.37847 -24.27037 -23.38860 -22.40698 -21.43499 -20.49051 -18.64304 -17.99563 -17.57475 -17.01216 -16.41970 -15.93245 -15.37189 -15.10548 -14.99597 -14.66247 -14.47299 -14.08550 -13.98649 -13.82093 -13.64784 -13.40528 -13.20979 -13.01395 -12.58549 -12.41710 -12.33318 -12.23119 -12.08389 -11.73630 -11.47134 -11.37399 -11.25537 -11.14373 -11.07420 -10.85253 -10.77296 -10.34285 -10.15466 -9.68796 -9.61495 -9.19012 -8.91791 -8.45321 -8.33750 -7.51684 -6.47819 -4.14366 1.67778 2.14225 3.14844 3.27126 3.29918 3.30526 3.57340 3.61995 4.28865 4.35956 4.54455 4.66713 4.70589 4.88151 4.94999 5.06097 5.07923 5.12336 5.13896 5.16343 5.26511 5.33047 5.37182 5.43820 5.45788 5.58922 5.63381 5.66426 5.79942 5.81584 5.84726 5.91516 6.05527 6.08681 6.11386 6.28917 6.35291 6.51704 6.78560 6.86036 6.98750 7.05927 7.13493 7.45477 7.63834 7.75356 7.93936 8.68809 8.87085 9.46944 10.58084 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.011328 B = 0.005111 C = 0.004218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2471.056032 B = 5476.801712 C = 6637.360857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.385 6.385 3 C 0.091 3.909 4 H 0.063 0.937 5 C -0.158 4.158 6 C 0.111 3.889 7 N -0.613 5.613 8 C 0.579 3.421 9 O -0.524 6.524 10 C -0.215 4.215 11 C -0.045 4.045 12 C -0.215 4.215 13 C -0.056 4.056 14 C -0.222 4.222 15 C 0.197 3.803 16 O -0.191 6.191 17 C -0.394 4.394 18 H 0.109 0.891 19 C 0.072 3.928 20 N -0.871 5.871 21 Si 0.891 3.109 22 H -0.273 1.273 23 H -0.281 1.281 24 H -0.242 1.242 25 C 0.140 3.860 26 H 0.105 0.895 27 C -0.161 4.161 28 C -0.126 4.126 29 H 0.083 0.917 30 H 0.039 0.961 31 H 0.040 0.960 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.064 0.936 35 H 0.099 0.901 36 H 0.116 0.884 37 H 0.113 0.887 38 H 0.114 0.886 39 H 0.138 0.862 40 H 0.282 0.718 41 H 0.057 0.943 42 H 0.066 0.934 43 H 0.061 0.939 44 H 0.078 0.922 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.110 3.736 8.183 21.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.304 6.304 3 C 0.034 3.966 4 H 0.081 0.919 5 C -0.196 4.196 6 C -0.012 4.012 7 N -0.348 5.348 8 C 0.369 3.631 9 O -0.399 6.399 10 C -0.219 4.219 11 C -0.064 4.064 12 C -0.234 4.234 13 C -0.074 4.074 14 C -0.241 4.241 15 C 0.141 3.859 16 O -0.093 6.093 17 C -0.469 4.469 18 H 0.127 0.873 19 C -0.133 4.133 20 N -0.507 5.507 21 Si 0.716 3.284 22 H -0.199 1.199 23 H -0.207 1.207 24 H -0.165 1.165 25 C 0.037 3.963 26 H 0.123 0.877 27 C -0.219 4.219 28 C -0.164 4.164 29 H 0.102 0.898 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.098 0.902 33 H 0.092 0.908 34 H 0.082 0.918 35 H 0.117 0.883 36 H 0.134 0.866 37 H 0.131 0.869 38 H 0.132 0.868 39 H 0.156 0.844 40 H 0.092 0.908 41 H 0.076 0.924 42 H 0.085 0.915 43 H 0.080 0.920 44 H 0.096 0.904 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -18.163 3.200 8.669 20.378 hybrid contribution -0.143 -0.240 0.274 0.391 sum -18.305 2.960 8.943 20.587 Atomic orbital electron populations 1.22761 0.81456 1.02565 0.99761 1.87948 1.19319 1.28052 1.95040 1.22164 0.94748 0.84272 0.95455 0.91893 1.22525 1.01946 0.97707 0.97451 1.21801 0.86155 0.95791 0.97450 1.48110 1.09339 1.63950 1.13421 1.18262 0.82241 0.76902 0.85659 1.90772 1.32098 1.56268 1.60758 1.18736 1.05263 1.04144 0.93797 1.20698 0.95563 0.93821 0.96285 1.20546 1.04302 1.04162 0.94353 1.20953 0.93643 0.94597 0.98244 1.21265 1.04486 1.00670 0.97707 1.18925 0.88805 0.86497 0.91705 1.83604 1.40829 1.41386 1.43463 1.20824 1.08644 1.22461 0.94926 0.87344 1.24445 0.93720 0.96111 0.99001 1.69619 1.16467 1.30910 1.33700 0.86341 0.77569 0.80488 0.84046 1.19892 1.20670 1.16520 1.21062 1.01235 0.91591 0.82461 0.87653 1.22173 0.99889 1.00266 0.99594 1.21995 0.95734 0.97400 1.01300 0.89825 0.94250 0.94094 0.90194 0.90820 0.91789 0.88279 0.86601 0.86928 0.86812 0.84402 0.90832 0.92432 0.91512 0.92034 0.90362 0.90294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.82 101.05 1.09 1.36 16 2 O -0.38 -4.70 10.35 -35.23 -0.36 -5.06 16 3 C 0.09 1.04 2.36 -26.69 -0.06 0.98 16 4 H 0.06 0.60 6.13 -51.93 -0.32 0.28 16 5 C -0.16 -1.89 5.71 -26.38 -0.15 -2.05 16 6 C 0.11 1.39 5.17 -3.48 -0.02 1.37 16 7 N -0.61 -9.66 2.68 -166.17 -0.44 -10.11 16 8 C 0.58 11.89 6.83 -12.47 -0.09 11.81 16 9 O -0.52 -12.95 16.17 1.98 0.03 -12.92 16 10 C -0.21 -4.34 4.62 -104.81 -0.48 -4.82 16 11 C -0.04 -0.72 7.77 -39.20 -0.30 -1.03 16 12 C -0.21 -3.26 10.02 -39.61 -0.40 -3.66 16 13 C -0.06 -0.94 10.03 -39.53 -0.40 -1.33 16 14 C -0.22 -4.63 9.16 -39.44 -0.36 -4.99 16 15 C 0.20 4.58 6.65 -38.60 -0.26 4.33 16 16 O -0.19 -5.20 7.78 -2.51 -0.02 -5.22 16 17 C -0.39 -11.21 9.95 30.91 0.31 -10.91 16 18 H 0.11 3.08 5.44 -52.49 -0.29 2.79 16 19 C 0.07 2.08 5.49 -17.52 -0.10 1.98 16 20 N -0.87 -25.32 13.96 55.48 0.77 -24.55 16 21 Si 0.89 22.87 28.62 -169.99 -4.86 18.01 16 22 H -0.27 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 24 H -0.24 -6.62 7.11 56.52 0.40 -6.22 16 25 C 0.14 1.92 3.22 -67.60 -0.22 1.70 16 26 H 0.11 1.69 7.00 -51.93 -0.36 1.33 16 27 C -0.16 -1.65 9.02 37.16 0.34 -1.31 16 28 C -0.13 -1.61 5.20 -26.61 -0.14 -1.74 16 29 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.04 0.28 8.08 -51.93 -0.42 -0.14 16 31 H 0.04 0.31 7.84 -51.93 -0.41 -0.10 16 32 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.07 0.73 7.84 -51.93 -0.41 0.32 16 34 H 0.06 0.63 7.48 -51.93 -0.39 0.24 16 35 H 0.10 1.34 5.37 -51.93 -0.28 1.06 16 36 H 0.12 1.52 7.73 -52.48 -0.41 1.11 16 37 H 0.11 1.36 8.06 -52.49 -0.42 0.94 16 38 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 39 H 0.14 2.99 5.64 -52.49 -0.30 2.70 16 40 H 0.28 7.59 8.31 -40.82 -0.34 7.25 16 41 H 0.06 0.51 5.71 -51.93 -0.30 0.21 16 42 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 45 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 LS Contribution 360.43 15.07 5.43 5.43 Total: -1.00 -33.15 360.43 -7.07 -40.23 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -6.38 Total: 2.50 kcal Atomic # 6 Polarization: -7.08 SS G_CDS: -1.23 Total: -8.31 kcal Atomic # 7 Polarization: -34.99 SS G_CDS: 0.33 Total: -34.66 kcal Atomic # 8 Polarization: -22.85 SS G_CDS: -0.35 Total: -23.20 kcal Atomic # 14 Polarization: 22.87 SS G_CDS: -4.86 Total: 18.01 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.15 -7.07 -40.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281752081.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.599 kcal (2) G-P(sol) polarization free energy of solvation -33.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds