Wall clock time and date at job start Tue Mar 31 2020 13:26:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42903 * 113.99917 * 2 1 4 4 H 1.09004 * 109.44866 * 30.03708 * 3 2 1 5 5 C 1.53038 * 109.46151 * 270.07366 * 3 2 1 6 6 C 1.53631 * 109.24222 * 178.48985 * 5 3 2 7 7 N 1.46931 * 108.53995 * 54.85460 * 6 5 3 8 8 C 1.34778 * 120.62912 * 126.37204 * 7 6 5 9 9 O 1.21589 * 119.99833 * 185.53339 * 8 7 6 10 10 C 1.47534 * 119.99995 * 5.52799 * 8 7 6 11 11 C 1.39664 * 120.19970 * 53.87605 * 10 8 7 12 12 C 1.37820 * 119.92441 * 180.02562 * 11 10 8 13 13 C 1.38573 * 120.32261 * 0.02562 * 12 11 10 14 14 C 1.38031 * 120.40018 * 0.02562 * 13 12 11 15 15 C 1.38831 * 120.07269 * 359.97438 * 14 13 12 16 16 O 1.35522 * 120.16323 * 180.02562 * 15 14 13 17 17 C 1.34812 * 116.99505 * 5.41884 * 16 15 14 18 18 H 1.08002 * 120.00736 * 354.95771 * 17 16 15 19 19 C 1.38707 * 119.99838 * 174.95912 * 17 16 15 20 20 N 1.31513 * 120.00150 * 180.02562 * 19 17 16 21 21 Si 1.86801 * 119.99787 * 0.02562 * 19 17 16 22 22 H 1.48497 * 109.46944 * 89.99543 * 21 19 17 23 23 H 1.48498 * 109.47314 * 209.99949 * 21 19 17 24 24 H 1.48504 * 109.47054 * 330.00153 * 21 19 17 25 25 C 1.46926 * 118.74003 * 306.09443 * 7 6 5 26 26 H 1.08998 * 109.58729 * 173.64990 * 25 7 6 27 27 C 1.52997 * 109.58529 * 294.07350 * 25 7 6 28 28 C 1.53038 * 109.45828 * 150.00320 * 3 2 1 29 29 H 1.08996 * 109.46905 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47161 * 299.99697 * 1 2 3 31 31 H 1.08994 * 109.47499 * 59.99630 * 1 2 3 32 32 H 1.09003 * 109.49899 * 298.56388 * 5 3 2 33 33 H 1.08998 * 109.49957 * 58.63131 * 5 3 2 34 34 H 1.08997 * 109.73729 * 295.11735 * 6 5 3 35 35 H 1.08995 * 109.66072 * 174.54620 * 6 5 3 36 36 H 1.08005 * 120.03524 * 359.74375 * 11 10 8 37 37 H 1.08002 * 119.84479 * 179.97438 * 12 11 10 38 38 H 1.08000 * 119.80082 * 179.97438 * 13 12 11 39 39 H 1.08001 * 119.96073 * 179.97438 * 14 13 12 40 40 H 0.96997 * 119.99922 * 180.02562 * 20 19 17 41 41 H 1.09004 * 109.47424 * 60.00061 * 27 25 7 42 42 H 1.09004 * 109.47226 * 179.97438 * 27 25 7 43 43 H 1.08997 * 109.47294 * 300.00385 * 27 25 7 44 44 H 1.08996 * 109.50016 * 61.43574 * 28 3 2 45 45 H 1.08997 * 109.49763 * 301.33524 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9990 0.5145 5 6 2.2159 1.7720 -1.4429 6 6 2.8056 3.1906 -1.4372 7 7 4.0301 3.1843 -0.6250 8 6 5.1912 3.6462 -1.1297 9 8 6.2175 3.5436 -0.4858 10 6 5.2171 4.2763 -2.4635 11 6 4.3598 5.3397 -2.7549 12 6 4.3883 5.9237 -4.0029 13 6 5.2638 5.4608 -4.9721 14 6 6.1161 4.4100 -4.6989 15 6 6.1013 3.8095 -3.4473 16 8 6.9377 2.7780 -3.1770 17 6 7.8378 2.4548 -4.1271 18 1 7.8161 2.9550 -5.0841 19 6 8.7918 1.4799 -3.8757 20 7 9.6703 1.1649 -4.8024 21 14 8.8290 0.6143 -2.2208 22 1 7.9679 -0.5943 -2.2750 23 1 10.2233 0.2148 -1.9022 24 1 8.3251 1.5342 -1.1695 25 6 3.9632 2.6705 0.7499 26 1 4.9665 2.6292 1.1737 27 6 3.0823 3.5896 1.5985 28 6 3.3592 1.2629 0.7214 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 2.9006 1.0928 -1.9508 33 1 1.2580 1.7792 -1.9631 34 1 2.0856 3.8869 -1.0073 35 1 3.0450 3.4924 -2.4568 36 1 3.6721 5.7009 -2.0044 37 1 3.7245 6.7457 -4.2269 38 1 5.2788 5.9244 -5.9474 39 1 6.7953 4.0546 -5.4598 40 1 10.3372 0.4829 -4.6267 41 1 2.0784 3.6233 1.1751 42 1 3.0336 3.2065 2.6179 43 1 3.5068 4.5934 1.6071 44 1 4.0332 0.5885 0.1932 45 1 3.2150 0.9083 1.7419 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281752081.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:26:08 Heat of formation + Delta-G solvation = -99.270950 kcal Electronic energy + Delta-G solvation = -28091.438482 eV Core-core repulsion = 24267.069477 eV Total energy + Delta-G solvation = -3824.369005 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.82108 -40.66352 -39.36199 -38.20893 -37.51743 -34.55593 -34.01430 -32.74619 -31.69822 -30.85066 -28.98730 -27.37882 -27.20962 -25.49006 -24.59011 -23.60021 -22.96318 -21.83112 -19.99298 -19.81270 -19.03831 -18.35764 -17.55701 -17.25651 -16.84563 -16.34058 -16.06565 -15.99829 -15.84807 -15.68990 -15.48538 -15.30587 -14.89721 -14.66945 -14.44518 -14.30912 -14.15287 -13.95130 -13.75504 -13.32446 -13.13265 -12.94780 -12.85554 -12.68984 -12.58412 -12.40786 -12.31390 -12.14300 -12.13719 -11.97141 -11.54858 -11.29471 -11.01257 -10.81601 -10.49902 -9.84917 -9.69415 -9.17428 -8.61033 -6.30362 0.18043 0.61736 1.17486 1.20824 1.46280 1.66725 2.00632 2.20196 2.68380 2.78353 2.92729 3.10422 3.48737 3.69774 3.83162 3.93731 4.03906 4.06218 4.12303 4.23612 4.30370 4.40289 4.43981 4.49636 4.55103 4.56928 4.58215 4.67414 4.68405 4.78931 4.84531 4.89591 4.94074 4.97987 5.02816 5.09501 5.13456 5.28835 5.36777 5.47265 5.58189 5.65065 5.68902 5.82372 6.14178 6.29677 6.34985 6.75385 7.18666 7.52502 8.50118 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.011328 B = 0.005111 C = 0.004218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2471.056032 B = 5476.801712 C = 6637.360857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.413 6.413 3 C 0.097 3.903 4 H 0.099 0.901 5 C -0.156 4.156 6 C 0.106 3.894 7 N -0.603 5.603 8 C 0.568 3.432 9 O -0.584 6.584 10 C -0.219 4.219 11 C -0.035 4.035 12 C -0.178 4.178 13 C -0.049 4.049 14 C -0.242 4.242 15 C 0.154 3.846 16 O -0.236 6.236 17 C -0.398 4.398 18 H 0.094 0.906 19 C 0.027 3.973 20 N -0.911 5.911 21 Si 0.945 3.055 22 H -0.268 1.268 23 H -0.260 1.260 24 H -0.277 1.277 25 C 0.133 3.867 26 H 0.069 0.931 27 C -0.149 4.149 28 C -0.124 4.124 29 H 0.090 0.910 30 H 0.059 0.941 31 H 0.052 0.948 32 H 0.038 0.962 33 H 0.104 0.896 34 H 0.113 0.887 35 H 0.089 0.911 36 H 0.160 0.840 37 H 0.169 0.831 38 H 0.152 0.848 39 H 0.115 0.885 40 H 0.286 0.714 41 H 0.084 0.916 42 H 0.086 0.914 43 H 0.055 0.945 44 H 0.035 0.965 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.316 6.505 9.171 26.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.333 6.333 3 C 0.040 3.960 4 H 0.117 0.883 5 C -0.194 4.194 6 C -0.015 4.015 7 N -0.336 5.336 8 C 0.358 3.642 9 O -0.464 6.464 10 C -0.223 4.223 11 C -0.053 4.053 12 C -0.196 4.196 13 C -0.067 4.067 14 C -0.261 4.261 15 C 0.102 3.898 16 O -0.141 6.141 17 C -0.474 4.474 18 H 0.112 0.888 19 C -0.173 4.173 20 N -0.551 5.551 21 Si 0.769 3.231 22 H -0.194 1.194 23 H -0.185 1.185 24 H -0.202 1.202 25 C 0.030 3.970 26 H 0.087 0.913 27 C -0.206 4.206 28 C -0.163 4.163 29 H 0.108 0.892 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.057 0.943 33 H 0.122 0.878 34 H 0.130 0.870 35 H 0.108 0.892 36 H 0.178 0.822 37 H 0.186 0.814 38 H 0.170 0.830 39 H 0.133 0.867 40 H 0.096 0.904 41 H 0.103 0.897 42 H 0.105 0.895 43 H 0.075 0.925 44 H 0.054 0.946 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -23.464 5.982 9.651 26.067 hybrid contribution 1.089 -0.825 -0.035 1.367 sum -22.375 5.157 9.616 24.894 Atomic orbital electron populations 1.22998 0.79334 1.03666 1.01256 1.87925 1.21715 1.28475 1.95160 1.22117 0.94144 0.84954 0.94788 0.88346 1.22514 1.02278 0.96476 0.98157 1.22120 0.85338 0.97194 0.96875 1.48202 1.09071 1.61881 1.14471 1.18527 0.82828 0.77143 0.85671 1.90740 1.34440 1.58916 1.62284 1.19124 1.05131 1.05075 0.93005 1.21229 0.94622 0.91535 0.97912 1.21224 1.02376 1.03375 0.92652 1.21419 0.92101 0.92611 1.00547 1.21311 1.05808 1.02508 0.96478 1.19616 0.89361 0.87012 0.93805 1.83577 1.42623 1.44441 1.43504 1.20804 1.09303 1.22353 0.94908 0.88845 1.24978 0.93992 0.97119 1.01207 1.69662 1.17868 1.32679 1.34873 0.85571 0.78243 0.78946 0.80303 1.19356 1.18467 1.20232 1.21232 1.00620 0.93267 0.81838 0.91320 1.22097 0.99893 0.98737 0.99918 1.21957 0.96171 0.95865 1.02269 0.89173 0.92284 0.92905 0.94325 0.87796 0.86951 0.89238 0.82220 0.81379 0.83045 0.86719 0.90422 0.89746 0.89488 0.92543 0.94557 0.88328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 10.82 113.37 1.23 1.54 16 2 O -0.41 -9.21 10.35 -148.98 -1.54 -10.75 16 3 C 0.10 1.95 2.36 30.62 0.07 2.02 16 4 H 0.10 1.30 6.13 -2.39 -0.01 1.29 16 5 C -0.16 -3.40 5.71 30.82 0.18 -3.22 16 6 C 0.11 2.30 5.17 86.51 0.45 2.75 16 7 N -0.60 -18.57 2.68 -797.90 -2.13 -20.71 16 8 C 0.57 23.96 6.83 86.69 0.59 24.56 16 9 O -0.58 -30.89 16.17 -0.83 -0.01 -30.90 16 10 C -0.22 -8.79 4.62 -19.99 -0.09 -8.89 16 11 C -0.03 -0.96 7.77 22.52 0.17 -0.79 16 12 C -0.18 -4.34 10.02 22.25 0.22 -4.12 16 13 C -0.05 -1.47 10.03 22.30 0.22 -1.25 16 14 C -0.24 -10.29 9.16 22.36 0.20 -10.08 16 15 C 0.15 7.49 6.65 22.91 0.15 7.64 16 16 O -0.24 -13.89 7.78 -16.89 -0.13 -14.02 16 17 C -0.40 -24.53 9.95 67.93 0.68 -23.86 16 18 H 0.09 5.81 5.44 -2.91 -0.02 5.80 16 19 C 0.03 1.67 5.49 84.85 0.47 2.13 16 20 N -0.91 -56.17 13.96 21.62 0.30 -55.87 16 21 Si 0.95 51.03 28.62 68.60 1.96 52.99 16 22 H -0.27 -13.96 7.11 99.48 0.71 -13.26 16 23 H -0.26 -12.91 7.11 99.48 0.71 -12.20 16 24 H -0.28 -16.42 7.11 99.48 0.71 -15.72 16 25 C 0.13 3.60 3.22 44.97 0.14 3.74 16 26 H 0.07 2.36 7.00 -2.39 -0.02 2.34 16 27 C -0.15 -2.50 9.02 71.98 0.65 -1.85 16 28 C -0.12 -3.12 5.20 30.67 0.16 -2.96 16 29 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.06 0.56 8.08 -2.39 -0.02 0.54 16 31 H 0.05 0.57 7.84 -2.39 -0.02 0.55 16 32 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.10 1.65 7.84 -2.39 -0.02 1.63 16 34 H 0.11 1.45 7.48 -2.39 -0.02 1.43 16 35 H 0.09 2.13 5.37 -2.39 -0.01 2.12 16 36 H 0.16 3.10 7.73 -2.91 -0.02 3.08 16 37 H 0.17 2.50 8.06 -2.91 -0.02 2.47 16 38 H 0.15 3.46 8.06 -2.91 -0.02 3.44 16 39 H 0.11 5.35 5.64 -2.91 -0.02 5.33 16 40 H 0.29 16.25 8.31 -92.71 -0.77 15.48 16 41 H 0.08 0.97 5.71 -2.39 -0.01 0.96 16 42 H 0.09 1.15 8.14 -2.38 -0.02 1.14 16 43 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 44 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 45 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 Total: -1.00 -84.02 360.43 4.94 -79.08 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: 1.00 Total: 12.81 kcal Atomic # 6 Polarization: -18.13 SS G_CDS: 5.50 Total: -12.64 kcal Atomic # 7 Polarization: -74.74 SS G_CDS: -1.83 Total: -76.58 kcal Atomic # 8 Polarization: -53.99 SS G_CDS: -1.69 Total: -55.67 kcal Atomic # 14 Polarization: 51.03 SS G_CDS: 1.96 Total: 52.99 kcal Total: -84.02 4.94 -79.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281752081.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.190 kcal (2) G-P(sol) polarization free energy of solvation -84.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds