Wall clock time and date at job start Tue Mar 31 2020 13:30:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 110.28057 * 2 1 4 4 C 1.54949 * 110.39395 * 237.85337 * 2 1 3 5 5 C 1.55301 * 100.94318 * 204.60233 * 4 2 1 6 6 H 1.09006 * 110.84608 * 275.93720 * 5 4 2 7 7 C 1.52999 * 110.84850 * 152.32623 * 5 4 2 8 8 C 1.54377 * 102.25562 * 34.13191 * 5 4 2 9 9 H 1.08996 * 109.90855 * 98.20190 * 8 5 4 10 10 C 1.50701 * 109.82873 * 219.13334 * 8 5 4 11 11 O 1.21287 * 120.00022 * 114.59073 * 10 8 5 12 12 N 1.34776 * 120.00277 * 294.58448 * 10 8 5 13 13 C 1.46497 * 120.00185 * 180.02562 * 12 10 8 14 14 C 1.50697 * 109.47001 * 180.02562 * 13 12 10 15 15 C 1.38297 * 119.93561 * 89.99476 * 14 13 12 16 16 C 1.38101 * 120.07198 * 180.02562 * 15 14 13 17 17 C 1.38880 * 119.93052 * 0.02562 * 16 15 14 18 18 O 1.35747 * 120.07077 * 179.97438 * 17 16 15 19 19 C 1.34837 * 117.00140 * 5.53398 * 18 17 16 20 20 H 1.08005 * 119.99591 * 354.94336 * 19 18 17 21 21 C 1.38648 * 120.00285 * 174.94674 * 19 18 17 22 22 N 1.31550 * 120.00164 * 180.02562 * 21 19 18 23 23 Si 1.86800 * 119.99869 * 359.97438 * 21 19 18 24 24 H 1.48510 * 109.47362 * 270.00287 * 23 21 19 25 25 H 1.48502 * 109.47206 * 30.00135 * 23 21 19 26 26 H 1.48502 * 109.47275 * 150.00685 * 23 21 19 27 27 C 1.38877 * 119.85872 * 0.24972 * 17 16 15 28 28 C 1.38100 * 119.93592 * 359.49136 * 27 17 16 29 29 O 1.43243 * 107.58662 * 338.64370 * 8 5 4 30 30 H 1.08996 * 109.47141 * 299.36353 * 1 2 3 31 31 H 1.09004 * 109.47080 * 59.36068 * 1 2 3 32 32 H 1.08998 * 109.47236 * 179.36167 * 1 2 3 33 33 H 1.09007 * 111.12281 * 322.51783 * 4 2 1 34 34 H 1.08995 * 111.12609 * 86.67795 * 4 2 1 35 35 H 1.09001 * 109.47099 * 307.15929 * 7 5 4 36 36 H 1.08991 * 109.47277 * 67.16458 * 7 5 4 37 37 H 1.09006 * 109.47007 * 187.16732 * 7 5 4 38 38 H 0.97000 * 119.99656 * 359.97438 * 12 10 8 39 39 H 1.08996 * 109.47832 * 59.99773 * 13 12 10 40 40 H 1.09000 * 109.47043 * 299.99703 * 13 12 10 41 41 H 1.08004 * 119.96616 * 0.02562 * 15 14 13 42 42 H 1.08004 * 120.03701 * 179.97438 * 16 15 14 43 43 H 0.97004 * 120.00071 * 179.97438 * 22 21 19 44 44 H 1.08006 * 120.03540 * 179.72770 * 27 17 16 45 45 H 1.08000 * 119.96907 * 180.23463 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9078 1.0224 0.0000 4 6 2.0699 -0.7728 -1.2297 5 6 3.4721 -1.2002 -0.7169 6 1 4.1987 -0.4009 -0.8626 7 6 3.9330 -2.4884 -1.4017 8 6 3.2124 -1.4395 0.7860 9 1 3.0654 -2.5033 0.9724 10 6 4.3811 -0.9359 1.5932 11 8 4.2364 0.0001 2.3509 12 7 5.5871 -1.5255 1.4733 13 6 6.7230 -1.0362 2.2584 14 6 7.9446 -1.8598 1.9415 15 6 8.7870 -1.4775 0.9135 16 6 9.9070 -2.2304 0.6203 17 6 10.1866 -3.3729 1.3587 18 8 11.2864 -4.1154 1.0726 19 6 12.1273 -3.6289 0.1375 20 1 11.8706 -2.7306 -0.4044 21 6 13.3212 -4.2818 -0.1284 22 7 14.1417 -3.8068 -1.0403 23 14 13.7652 -5.8351 0.8095 24 1 14.5228 -5.4741 2.0347 25 1 12.5237 -6.5558 1.1895 26 1 14.6022 -6.7101 -0.0502 27 6 9.3356 -3.7573 2.3867 28 6 8.2202 -2.9973 2.6785 29 8 2.0285 -0.7157 1.1413 30 1 -0.3633 0.5039 0.8956 31 1 -0.3633 0.5237 -0.8842 32 1 -0.3633 -1.0276 -0.0114 33 1 1.4505 -1.6422 -1.4503 34 1 2.1516 -0.1203 -2.0989 35 1 3.1623 -3.2519 -1.2960 36 1 4.1095 -2.2944 -2.4596 37 1 4.8556 -2.8368 -0.9373 38 1 5.7027 -2.2743 0.8676 39 1 6.4936 -1.1199 3.3207 40 1 6.9143 0.0075 2.0092 41 1 8.5688 -0.5891 0.3393 42 1 10.5642 -1.9316 -0.1829 43 1 14.9772 -4.2634 -1.2261 44 1 9.5480 -4.6478 2.9599 45 1 7.5601 -3.2936 3.4803 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282771178.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:55 Heat of formation + Delta-G solvation = -95.077603 kcal Electronic energy + Delta-G solvation = -26122.797656 eV Core-core repulsion = 22298.610489 eV Total energy + Delta-G solvation = -3824.187167 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.72843 -39.41525 -38.59585 -37.00968 -34.71392 -33.79833 -32.54016 -32.42791 -30.44513 -30.18259 -27.42809 -27.25919 -25.77900 -24.35498 -22.21872 -21.70074 -21.37612 -20.64782 -20.27523 -18.09232 -17.95278 -17.41893 -16.78528 -16.15254 -15.58375 -15.17748 -14.88041 -14.82985 -14.47581 -14.14650 -14.06220 -13.88204 -13.59698 -13.57772 -13.41618 -12.91259 -12.79024 -12.74320 -12.54154 -12.36673 -12.28764 -12.04152 -11.78662 -11.70956 -11.51699 -11.18850 -11.01666 -10.91851 -10.85427 -10.80990 -10.37625 -10.25074 -9.51619 -9.42802 -9.03180 -8.96978 -8.41291 -7.50718 -6.52394 -4.19480 1.91049 1.99438 2.54879 3.03046 3.15417 3.19371 3.32642 3.62736 3.98597 4.14455 4.28903 4.32047 4.48882 4.66058 4.71733 4.78049 4.85343 4.93638 4.99720 5.05883 5.13789 5.21262 5.21841 5.32162 5.39032 5.43720 5.50184 5.53024 5.62740 5.69825 5.75593 5.81703 5.84785 5.86865 6.00022 6.21586 6.40911 6.44939 6.64536 6.66212 6.87145 7.09419 7.15577 7.46550 7.53099 7.67939 7.91602 8.21100 8.82115 9.42544 10.54688 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.025917 B = 0.002322 C = 0.002236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.108876 B =12053.378037 C =12518.964887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.072 3.928 3 H 0.072 0.928 4 C -0.146 4.146 5 C -0.117 4.117 6 H 0.091 0.909 7 C -0.145 4.145 8 C 0.069 3.931 9 H 0.106 0.894 10 C 0.497 3.503 11 O -0.530 6.530 12 N -0.720 5.720 13 C 0.177 3.823 14 C -0.206 4.206 15 C -0.052 4.052 16 C -0.224 4.224 17 C 0.167 3.833 18 O -0.212 6.212 19 C -0.392 4.392 20 H 0.108 0.892 21 C 0.064 3.936 22 N -0.875 5.875 23 Si 0.906 3.094 24 H -0.272 1.272 25 H -0.259 1.259 26 H -0.281 1.281 27 C -0.195 4.195 28 C -0.056 4.056 29 O -0.349 6.349 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.062 0.938 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.063 0.937 36 H 0.067 0.933 37 H 0.063 0.937 38 H 0.400 0.600 39 H 0.068 0.932 40 H 0.067 0.933 41 H 0.111 0.889 42 H 0.135 0.865 43 H 0.281 0.719 44 H 0.119 0.881 45 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.496 3.273 -1.012 22.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.015 3.985 3 H 0.090 0.910 4 C -0.184 4.184 5 C -0.136 4.136 6 H 0.109 0.891 7 C -0.202 4.202 8 C 0.007 3.993 9 H 0.123 0.877 10 C 0.282 3.718 11 O -0.406 6.406 12 N -0.374 5.374 13 C 0.055 3.945 14 C -0.207 4.207 15 C -0.071 4.071 16 C -0.243 4.243 17 C 0.113 3.887 18 O -0.117 6.117 19 C -0.467 4.467 20 H 0.125 0.875 21 C -0.140 4.140 22 N -0.512 5.512 23 Si 0.731 3.269 24 H -0.198 1.198 25 H -0.183 1.183 26 H -0.207 1.207 27 C -0.214 4.214 28 C -0.075 4.075 29 O -0.267 6.267 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.102 0.898 34 H 0.105 0.895 35 H 0.082 0.918 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.235 0.765 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.129 0.871 42 H 0.152 0.848 43 H 0.091 0.909 44 H 0.137 0.863 45 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -22.389 3.726 -0.286 22.699 hybrid contribution 0.705 -0.864 -0.269 1.147 sum -21.684 2.862 -0.555 21.879 Atomic orbital electron populations 1.21863 0.93356 1.02842 1.02576 1.23039 0.95031 0.95901 0.84564 0.91005 1.23425 0.95279 1.01111 0.98548 1.22690 0.98419 1.00154 0.92366 0.89107 1.21796 1.01733 0.95539 1.01157 1.22725 0.85446 0.97325 0.93764 0.87685 1.20995 0.84109 0.83483 0.83255 1.90703 1.83995 1.28020 1.37862 1.46338 1.09116 1.36351 1.45619 1.19999 0.82503 0.96807 0.95162 1.19278 0.99146 0.99967 1.02357 1.20693 0.93320 0.97854 0.95236 1.21278 1.00487 0.98080 1.04463 1.19182 0.87423 0.89729 0.92323 1.83576 1.29636 1.44218 1.54236 1.20783 0.98934 1.12507 1.14489 0.87496 1.24490 0.94219 0.99012 0.96238 1.69640 1.10715 1.39996 1.30835 0.86174 0.79251 0.81874 0.79571 1.19782 1.18330 1.20677 1.20213 0.97350 1.03278 1.00560 1.20547 0.95625 0.93492 0.97838 1.88525 1.39285 1.64732 1.34120 0.91687 0.91123 0.91867 0.89760 0.89545 0.91808 0.91350 0.91799 0.76492 0.91396 0.91458 0.87136 0.84789 0.90887 0.86344 0.86738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.62 37.15 0.36 -0.68 16 2 C 0.07 0.65 4.07 -25.71 -0.10 0.54 16 3 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 4 C -0.15 -0.99 6.03 -24.48 -0.15 -1.14 16 5 C -0.12 -0.93 3.10 -88.68 -0.27 -1.21 16 6 H 0.09 0.80 7.84 -51.93 -0.41 0.39 16 7 C -0.14 -0.94 9.15 37.16 0.34 -0.60 16 8 C 0.07 0.72 3.55 -27.16 -0.10 0.62 16 9 H 0.11 0.92 7.82 -51.93 -0.41 0.51 16 10 C 0.50 6.65 7.03 -10.99 -0.08 6.57 16 11 O -0.53 -9.38 16.52 -14.10 -0.23 -9.61 16 12 N -0.72 -8.61 5.53 -61.48 -0.34 -8.95 16 13 C 0.18 2.39 5.80 -5.20 -0.03 2.36 16 14 C -0.21 -3.10 5.25 -104.58 -0.55 -3.65 16 15 C -0.05 -0.86 9.69 -39.61 -0.38 -1.24 16 16 C -0.22 -4.47 9.17 -39.39 -0.36 -4.83 16 17 C 0.17 3.60 6.65 -39.11 -0.26 3.34 16 18 O -0.21 -5.34 8.59 0.04 0.00 -5.34 16 19 C -0.39 -10.59 9.95 30.88 0.31 -10.28 16 20 H 0.11 2.94 5.44 -52.48 -0.29 2.66 16 21 C 0.06 1.75 5.49 -17.52 -0.10 1.65 16 22 N -0.87 -24.47 13.96 55.48 0.77 -23.70 16 23 Si 0.91 20.92 28.62 -169.99 -4.86 16.06 16 24 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 25 H -0.26 -5.99 7.11 56.52 0.40 -5.59 16 26 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 27 C -0.19 -3.56 9.99 -39.40 -0.39 -3.96 16 28 C -0.06 -0.87 9.69 -39.61 -0.38 -1.25 16 29 O -0.35 -4.29 10.25 -54.88 -0.56 -4.85 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.08 0.49 7.92 -51.93 -0.41 0.08 16 34 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.06 0.36 8.10 -51.93 -0.42 -0.06 16 36 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 37 H 0.06 0.43 6.90 -51.93 -0.36 0.07 16 38 H 0.40 4.09 7.23 -40.82 -0.29 3.79 16 39 H 0.07 0.93 8.08 -51.93 -0.42 0.51 16 40 H 0.07 0.94 8.08 -51.93 -0.42 0.52 16 41 H 0.11 1.59 8.06 -52.48 -0.42 1.17 16 42 H 0.13 2.84 5.64 -52.48 -0.30 2.55 16 43 H 0.28 7.25 8.31 -40.82 -0.34 6.91 16 44 H 0.12 2.03 8.06 -52.48 -0.42 1.61 16 45 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 LS Contribution 373.41 15.07 5.63 5.63 Total: -1.00 -31.29 373.41 -8.41 -39.70 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -6.66 Total: 4.81 kcal Atomic # 6 Polarization: -11.59 SS G_CDS: -2.15 Total: -13.74 kcal Atomic # 7 Polarization: -33.08 SS G_CDS: 0.43 Total: -32.65 kcal Atomic # 8 Polarization: -19.01 SS G_CDS: -0.80 Total: -19.81 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -4.86 Total: 16.06 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.29 -8.41 -39.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282771178.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.373 kcal (2) G-P(sol) polarization free energy of solvation -31.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds