Wall clock time and date at job start Tue Mar 31 2020 13:26:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.69930 * 2 1 4 4 C 1.53626 * 109.66383 * 120.58896 * 2 1 3 5 5 C 1.53036 * 109.23850 * 174.55079 * 4 2 1 6 6 H 1.09004 * 109.46510 * 58.53420 * 5 4 2 7 7 O 1.42903 * 109.45688 * 178.49345 * 5 4 2 8 8 C 1.53041 * 109.54030 * 298.51262 * 5 4 2 9 9 C 1.53188 * 109.31347 * 61.36903 * 8 5 4 10 10 N 1.46921 * 109.58819 * 239.64498 * 2 1 3 11 11 C 1.34781 * 120.63144 * 6.62624 * 10 2 1 12 12 O 1.21278 * 119.99530 * 5.52381 * 11 10 2 13 13 C 1.50693 * 120.00269 * 185.52294 * 11 10 2 14 14 C 1.50698 * 109.47208 * 180.02562 * 13 11 10 15 15 C 1.38301 * 119.93058 * 89.99899 * 14 13 11 16 16 C 1.38104 * 120.06487 * 179.97438 * 15 14 13 17 17 C 1.38880 * 119.93427 * 359.97438 * 16 15 14 18 18 O 1.35749 * 120.06910 * 180.02562 * 17 16 15 19 19 C 1.34824 * 116.99870 * 354.70389 * 18 17 16 20 20 H 1.08005 * 120.00535 * 5.02923 * 19 18 17 21 21 C 1.38659 * 119.99789 * 185.02935 * 19 18 17 22 22 N 1.31552 * 120.00188 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99875 * 179.97438 * 21 19 18 24 24 H 1.48494 * 109.47320 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.46911 * 120.00030 * 23 21 19 26 26 H 1.48500 * 109.47241 * 239.99792 * 23 21 19 27 27 C 1.38872 * 119.85935 * 0.02562 * 17 16 15 28 28 C 1.38099 * 119.93233 * 359.97438 * 27 17 16 29 29 H 1.09003 * 109.47112 * 174.54492 * 1 2 3 30 30 H 1.09003 * 109.46972 * 294.54342 * 1 2 3 31 31 H 1.09001 * 109.47309 * 54.54573 * 1 2 3 32 32 H 1.08997 * 109.63253 * 54.56240 * 4 2 1 33 33 H 1.08994 * 109.45821 * 294.43458 * 4 2 1 34 34 H 0.96707 * 113.99835 * 180.02562 * 7 5 4 35 35 H 1.09000 * 109.49536 * 301.41410 * 8 5 4 36 36 H 1.09000 * 109.49827 * 181.31842 * 8 5 4 37 37 H 1.08998 * 109.59224 * 185.58161 * 9 8 5 38 38 H 1.08997 * 109.59230 * 65.15106 * 9 8 5 39 39 H 1.09007 * 109.47030 * 59.99516 * 13 11 10 40 40 H 1.09002 * 109.47177 * 300.00240 * 13 11 10 41 41 H 1.07995 * 119.96897 * 0.25811 * 15 14 13 42 42 H 1.08004 * 120.02854 * 180.02562 * 16 15 14 43 43 H 0.97004 * 120.00389 * 179.97438 * 22 21 19 44 44 H 1.07999 * 120.03397 * 179.97438 * 27 17 16 45 45 H 1.08001 * 119.96654 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0470 -0.7362 1.2453 5 6 3.5711 -0.8496 1.1676 6 1 4.0066 0.1473 1.0990 7 8 4.0603 -1.5028 2.3408 8 6 3.9615 -1.6626 -0.0688 9 6 3.4657 -0.9419 -1.3263 10 7 2.0226 -0.6995 -1.1944 11 6 1.1675 -1.1062 -2.1536 12 8 -0.0063 -0.8088 -2.0853 13 6 1.6699 -1.9303 -3.3109 14 6 0.5231 -2.2508 -4.2346 15 6 0.2164 -1.3949 -5.2767 16 6 -0.8336 -1.6862 -6.1252 17 6 -1.5815 -2.8403 -5.9314 18 8 -2.6139 -3.1296 -6.7640 19 6 -2.9308 -2.2031 -7.6908 20 1 -2.3218 -1.3178 -7.7998 21 6 -4.0385 -2.3869 -8.5043 22 7 -4.7806 -3.4650 -8.3713 23 14 -4.4781 -1.1029 -9.7879 24 1 -3.4928 0.0069 -9.7356 25 1 -4.4532 -1.7231 -11.1370 26 1 -5.8373 -0.5722 -9.5121 27 6 -1.2710 -3.6977 -4.8840 28 6 -0.2198 -3.4008 -4.0390 29 1 -0.3633 -1.0230 -0.0977 30 1 -0.3633 0.4269 0.9348 31 1 -0.3634 0.5961 -0.8371 32 1 1.6097 -1.7336 1.2890 33 1 1.7688 -0.1775 2.1389 34 1 5.0213 -1.6090 2.3601 35 1 3.5062 -2.6514 -0.0127 36 1 5.0461 -1.7629 -0.1108 37 1 3.6532 -1.5636 -2.2018 38 1 3.9877 0.0091 -1.4324 39 1 2.1046 -2.8568 -2.9355 40 1 2.4282 -1.3677 -3.8554 41 1 0.8015 -0.5002 -5.4299 42 1 -1.0723 -1.0176 -6.9391 43 1 -5.5558 -3.5934 -8.9401 44 1 -1.8510 -4.5957 -4.7304 45 1 0.0219 -4.0670 -3.2240 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294260792.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:26:16 Heat of formation + Delta-G solvation = -77.755577 kcal Electronic energy + Delta-G solvation = -26628.904323 eV Core-core repulsion = 22805.468295 eV Total energy + Delta-G solvation = -3823.436028 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.71020 -39.01325 -38.24037 -36.58921 -35.87416 -33.50592 -32.32047 -31.75391 -30.92086 -30.10210 -27.73497 -26.54999 -25.12169 -24.42191 -22.59105 -21.92503 -21.45321 -20.44565 -19.01514 -17.93664 -17.64488 -16.94079 -16.87657 -16.31220 -15.57824 -15.03664 -14.92704 -14.63355 -14.51370 -14.18593 -13.90349 -13.73961 -13.60199 -13.35774 -13.21063 -12.78114 -12.66553 -12.53121 -12.31574 -12.10849 -11.92736 -11.87117 -11.77097 -11.47917 -11.27145 -11.23010 -10.87445 -10.78167 -10.68603 -10.55977 -10.38883 -10.29809 -9.27945 -9.01044 -8.78013 -8.73666 -8.10381 -7.11485 -6.40927 -3.99323 2.28654 2.30042 2.74148 2.89296 3.15096 3.16777 3.22078 3.72999 4.00253 4.24978 4.30743 4.53411 4.59004 4.69056 4.86719 4.88661 5.01065 5.12088 5.14513 5.18050 5.23995 5.28700 5.31185 5.36073 5.47067 5.52068 5.66437 5.69227 5.71188 5.76703 5.83495 5.89179 6.11852 6.25611 6.29475 6.46465 6.61378 6.74818 6.96023 7.10082 7.20792 7.28478 7.35196 7.41760 7.49606 7.88623 8.04567 8.32567 9.04987 9.76020 10.77366 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.030490 B = 0.002413 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.123621 B =11601.677537 C =11763.330517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.149 3.851 3 H 0.069 0.931 4 C -0.125 4.125 5 C 0.105 3.895 6 H 0.056 0.944 7 O -0.567 6.567 8 C -0.169 4.169 9 C 0.111 3.889 10 N -0.622 5.622 11 C 0.513 3.487 12 O -0.508 6.508 13 C -0.081 4.081 14 C -0.169 4.169 15 C -0.056 4.056 16 C -0.232 4.232 17 C 0.157 3.843 18 O -0.179 6.179 19 C -0.390 4.390 20 H 0.092 0.908 21 C 0.038 3.962 22 N -0.863 5.863 23 Si 0.941 3.059 24 H -0.267 1.267 25 H -0.276 1.276 26 H -0.276 1.276 27 C -0.191 4.191 28 C -0.059 4.059 29 H 0.067 0.933 30 H 0.042 0.958 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.377 0.623 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.092 0.908 38 H 0.069 0.931 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.103 0.897 42 H 0.126 0.874 43 H 0.269 0.731 44 H 0.116 0.884 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.289 6.042 16.418 26.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.046 3.954 3 H 0.087 0.913 4 C -0.163 4.163 5 C 0.047 3.953 6 H 0.074 0.926 7 O -0.373 6.373 8 C -0.207 4.207 9 C -0.013 4.013 10 N -0.359 5.359 11 C 0.302 3.698 12 O -0.382 6.382 13 C -0.121 4.121 14 C -0.170 4.170 15 C -0.075 4.075 16 C -0.251 4.251 17 C 0.103 3.897 18 O -0.082 6.082 19 C -0.466 4.466 20 H 0.110 0.890 21 C -0.166 4.166 22 N -0.499 5.499 23 Si 0.766 3.234 24 H -0.191 1.191 25 H -0.202 1.202 26 H -0.202 1.202 27 C -0.210 4.210 28 C -0.078 4.078 29 H 0.086 0.914 30 H 0.061 0.939 31 H 0.102 0.898 32 H 0.094 0.906 33 H 0.098 0.902 34 H 0.224 0.776 35 H 0.096 0.904 36 H 0.095 0.905 37 H 0.111 0.889 38 H 0.087 0.913 39 H 0.108 0.892 40 H 0.107 0.893 41 H 0.121 0.879 42 H 0.144 0.856 43 H 0.079 0.921 44 H 0.134 0.866 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 18.613 5.897 16.444 25.527 hybrid contribution 0.602 0.682 -0.725 1.163 sum 19.215 6.579 15.719 25.683 Atomic orbital electron populations 1.22197 0.91882 1.04239 1.01226 1.21262 0.96372 0.94657 0.83117 0.91257 1.22077 0.93339 1.02549 0.98342 1.21784 0.95095 0.94414 0.84052 0.92628 1.86549 1.26980 1.81835 1.41925 1.22683 1.01563 1.01006 0.95469 1.21647 0.80789 1.00471 0.98371 1.48311 1.06981 1.59614 1.21013 1.21017 0.86134 0.79694 0.82995 1.90786 1.17011 1.54711 1.75692 1.20487 0.98017 0.99659 0.93907 1.18634 1.00763 0.98275 0.99377 1.20490 0.96061 0.96925 0.93976 1.21102 0.99776 1.00387 1.03877 1.19375 0.88307 0.92454 0.89567 1.83976 1.42166 1.42319 1.39774 1.21373 1.11703 1.01542 1.12003 0.89049 1.25288 0.95036 0.97804 0.98470 1.70049 1.15946 1.25718 1.38150 0.85650 0.78838 0.79486 0.79461 1.19126 1.20188 1.20156 1.20147 1.01646 1.01913 0.97332 1.20384 0.94299 0.95892 0.97186 0.91395 0.93880 0.89824 0.90633 0.90201 0.77591 0.90393 0.90451 0.88927 0.91302 0.89174 0.89250 0.87919 0.85623 0.92125 0.86593 0.87498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 7.62 37.16 0.28 -1.42 16 2 C 0.15 1.48 3.51 -67.38 -0.24 1.24 16 3 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 4 C -0.12 -1.10 5.05 -26.39 -0.13 -1.23 16 5 C 0.11 0.73 3.43 -26.69 -0.09 0.64 16 6 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 7 O -0.57 -4.27 13.32 -35.23 -0.47 -4.74 16 8 C -0.17 -1.00 5.70 -26.61 -0.15 -1.15 16 9 C 0.11 0.74 6.35 -3.71 -0.02 0.72 16 10 N -0.62 -6.41 2.97 -164.97 -0.49 -6.90 16 11 C 0.51 7.04 7.50 -10.99 -0.08 6.96 16 12 O -0.51 -9.08 11.60 5.56 0.06 -9.02 16 13 C -0.08 -1.01 4.18 -29.04 -0.12 -1.14 16 14 C -0.17 -2.95 4.38 -104.58 -0.46 -3.41 16 15 C -0.06 -1.07 9.69 -39.61 -0.38 -1.45 16 16 C -0.23 -5.25 9.17 -39.39 -0.36 -5.61 16 17 C 0.16 3.93 6.65 -39.11 -0.26 3.67 16 18 O -0.18 -5.25 9.76 0.07 0.00 -5.25 16 19 C -0.39 -11.17 9.49 30.89 0.29 -10.87 16 20 H 0.09 2.44 5.20 -52.48 -0.27 2.16 16 21 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 22 N -0.86 -25.81 13.67 55.48 0.76 -25.05 16 23 Si 0.94 20.97 29.55 -169.99 -5.02 15.94 16 24 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 25 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 26 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 27 C -0.19 -4.22 9.99 -39.40 -0.39 -4.62 16 28 C -0.06 -1.11 9.69 -39.61 -0.38 -1.49 16 29 H 0.07 0.98 6.95 -51.93 -0.36 0.62 16 30 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.08 1.22 6.55 -51.93 -0.34 0.88 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.38 1.18 9.08 45.56 0.41 1.60 16 35 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 37 H 0.09 0.53 5.93 -51.93 -0.31 0.22 16 38 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.09 0.93 7.87 -51.93 -0.41 0.52 16 40 H 0.09 0.91 7.65 -51.93 -0.40 0.51 16 41 H 0.10 1.68 8.06 -52.49 -0.42 1.25 16 42 H 0.13 2.84 5.64 -52.48 -0.30 2.54 16 43 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 44 H 0.12 2.47 8.06 -52.49 -0.42 2.05 16 45 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 LS Contribution 362.55 15.07 5.46 5.46 Total: -1.00 -34.88 362.55 -8.05 -42.93 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: -5.76 Total: 4.81 kcal Atomic # 6 Polarization: -15.58 SS G_CDS: -2.60 Total: -18.18 kcal Atomic # 7 Polarization: -32.22 SS G_CDS: 0.27 Total: -31.95 kcal Atomic # 8 Polarization: -18.60 SS G_CDS: -0.40 Total: -19.01 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.88 -8.05 -42.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294260792.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.826 kcal (2) G-P(sol) polarization free energy of solvation -34.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds