Wall clock time and date at job start Tue Mar 31 2020 13:26:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.69930 * 2 1 4 4 C 1.53626 * 109.66383 * 120.58896 * 2 1 3 5 5 C 1.53036 * 109.23850 * 174.55079 * 4 2 1 6 6 H 1.09004 * 109.46510 * 58.53420 * 5 4 2 7 7 O 1.42903 * 109.45688 * 178.49345 * 5 4 2 8 8 C 1.53041 * 109.54030 * 298.51262 * 5 4 2 9 9 C 1.53188 * 109.31347 * 61.36903 * 8 5 4 10 10 N 1.46921 * 109.58819 * 239.64498 * 2 1 3 11 11 C 1.34781 * 120.63144 * 6.62624 * 10 2 1 12 12 O 1.21278 * 119.99530 * 5.52381 * 11 10 2 13 13 C 1.50693 * 120.00269 * 185.52294 * 11 10 2 14 14 C 1.50698 * 109.47208 * 180.02562 * 13 11 10 15 15 C 1.38301 * 119.93058 * 89.99899 * 14 13 11 16 16 C 1.38104 * 120.06487 * 179.97438 * 15 14 13 17 17 C 1.38880 * 119.93427 * 359.97438 * 16 15 14 18 18 O 1.35749 * 120.06910 * 180.02562 * 17 16 15 19 19 C 1.34824 * 116.99870 * 354.70389 * 18 17 16 20 20 H 1.08005 * 120.00535 * 5.02923 * 19 18 17 21 21 C 1.38659 * 119.99789 * 185.02935 * 19 18 17 22 22 N 1.31552 * 120.00188 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99875 * 179.97438 * 21 19 18 24 24 H 1.48494 * 109.47320 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.46911 * 120.00030 * 23 21 19 26 26 H 1.48500 * 109.47241 * 239.99792 * 23 21 19 27 27 C 1.38872 * 119.85935 * 0.02562 * 17 16 15 28 28 C 1.38099 * 119.93233 * 359.97438 * 27 17 16 29 29 H 1.09003 * 109.47112 * 174.54492 * 1 2 3 30 30 H 1.09003 * 109.46972 * 294.54342 * 1 2 3 31 31 H 1.09001 * 109.47309 * 54.54573 * 1 2 3 32 32 H 1.08997 * 109.63253 * 54.56240 * 4 2 1 33 33 H 1.08994 * 109.45821 * 294.43458 * 4 2 1 34 34 H 0.96707 * 113.99835 * 180.02562 * 7 5 4 35 35 H 1.09000 * 109.49536 * 301.41410 * 8 5 4 36 36 H 1.09000 * 109.49827 * 181.31842 * 8 5 4 37 37 H 1.08998 * 109.59224 * 185.58161 * 9 8 5 38 38 H 1.08997 * 109.59230 * 65.15106 * 9 8 5 39 39 H 1.09007 * 109.47030 * 59.99516 * 13 11 10 40 40 H 1.09002 * 109.47177 * 300.00240 * 13 11 10 41 41 H 1.07995 * 119.96897 * 0.25811 * 15 14 13 42 42 H 1.08004 * 120.02854 * 180.02562 * 16 15 14 43 43 H 0.97004 * 120.00389 * 179.97438 * 22 21 19 44 44 H 1.07999 * 120.03397 * 179.97438 * 27 17 16 45 45 H 1.08001 * 119.96654 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0470 -0.7362 1.2453 5 6 3.5711 -0.8496 1.1676 6 1 4.0066 0.1473 1.0990 7 8 4.0603 -1.5028 2.3408 8 6 3.9615 -1.6626 -0.0688 9 6 3.4657 -0.9419 -1.3263 10 7 2.0226 -0.6995 -1.1944 11 6 1.1675 -1.1062 -2.1536 12 8 -0.0063 -0.8088 -2.0853 13 6 1.6699 -1.9303 -3.3109 14 6 0.5231 -2.2508 -4.2346 15 6 0.2164 -1.3949 -5.2767 16 6 -0.8336 -1.6862 -6.1252 17 6 -1.5815 -2.8403 -5.9314 18 8 -2.6139 -3.1296 -6.7640 19 6 -2.9308 -2.2031 -7.6908 20 1 -2.3218 -1.3178 -7.7998 21 6 -4.0385 -2.3869 -8.5043 22 7 -4.7806 -3.4650 -8.3713 23 14 -4.4781 -1.1029 -9.7879 24 1 -3.4928 0.0069 -9.7356 25 1 -4.4532 -1.7231 -11.1370 26 1 -5.8373 -0.5722 -9.5121 27 6 -1.2710 -3.6977 -4.8840 28 6 -0.2198 -3.4008 -4.0390 29 1 -0.3633 -1.0230 -0.0977 30 1 -0.3633 0.4269 0.9348 31 1 -0.3634 0.5961 -0.8371 32 1 1.6097 -1.7336 1.2890 33 1 1.7688 -0.1775 2.1389 34 1 5.0213 -1.6090 2.3601 35 1 3.5062 -2.6514 -0.0127 36 1 5.0461 -1.7629 -0.1108 37 1 3.6532 -1.5636 -2.2018 38 1 3.9877 0.0091 -1.4324 39 1 2.1046 -2.8568 -2.9355 40 1 2.4282 -1.3677 -3.8554 41 1 0.8015 -0.5002 -5.4299 42 1 -1.0723 -1.0176 -6.9391 43 1 -5.5558 -3.5934 -8.9401 44 1 -1.8510 -4.5957 -4.7304 45 1 0.0219 -4.0670 -3.2240 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294260792.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:26:16 Heat of formation + Delta-G solvation = -102.892442 kcal Electronic energy + Delta-G solvation = -26629.994339 eV Core-core repulsion = 22805.468295 eV Total energy + Delta-G solvation = -3824.526044 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.63363 -40.68132 -39.14407 -38.17726 -36.69045 -34.57616 -34.14271 -32.52474 -32.18670 -31.76671 -28.64593 -28.00201 -26.97562 -25.09128 -23.63727 -23.50536 -22.39740 -21.65148 -19.94653 -19.82353 -18.83076 -18.17443 -17.75532 -17.22260 -16.68536 -16.33264 -16.23346 -15.85181 -15.63074 -15.51357 -15.25815 -15.10135 -14.75125 -14.44922 -14.39350 -14.22608 -14.03655 -13.60717 -13.47442 -13.28441 -12.97538 -12.80509 -12.76972 -12.59572 -12.48999 -12.41945 -12.25826 -12.24277 -12.10362 -12.01336 -11.40997 -11.17534 -10.81191 -10.77886 -10.07065 -9.76194 -9.57503 -8.88726 -8.47676 -6.15726 0.61660 0.67740 1.33510 1.42293 1.52451 1.74003 2.04196 2.17249 2.83052 3.15402 3.23358 3.52390 3.64065 3.76122 3.90443 3.98343 4.05091 4.09230 4.15154 4.19522 4.25721 4.44318 4.47453 4.49064 4.56916 4.59706 4.66229 4.77280 4.79766 4.82279 4.88281 4.99127 5.00544 5.09577 5.14640 5.17392 5.30688 5.34687 5.37910 5.57025 5.71801 5.72332 5.78512 6.02896 6.22585 6.49747 6.93839 6.96982 7.34446 7.78734 8.76129 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.030490 B = 0.002413 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.123621 B =11601.677537 C =11763.330517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.150 3.850 3 H 0.089 0.911 4 C -0.122 4.122 5 C 0.106 3.894 6 H 0.074 0.926 7 O -0.588 6.588 8 C -0.162 4.162 9 C 0.102 3.898 10 N -0.615 5.615 11 C 0.509 3.491 12 O -0.563 6.563 13 C -0.079 4.079 14 C -0.142 4.142 15 C -0.058 4.058 16 C -0.243 4.243 17 C 0.112 3.888 18 O -0.234 6.234 19 C -0.413 4.413 20 H 0.100 0.900 21 C -0.026 4.026 22 N -0.922 5.922 23 Si 1.020 2.980 24 H -0.252 1.252 25 H -0.265 1.265 26 H -0.269 1.269 27 C -0.206 4.206 28 C -0.058 4.058 29 H 0.039 0.961 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.053 0.947 33 H 0.081 0.919 34 H 0.396 0.604 35 H 0.061 0.939 36 H 0.108 0.892 37 H 0.110 0.890 38 H 0.093 0.907 39 H 0.124 0.876 40 H 0.128 0.872 41 H 0.139 0.861 42 H 0.117 0.883 43 H 0.272 0.728 44 H 0.110 0.890 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.752 7.898 17.772 31.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.047 3.953 3 H 0.107 0.893 4 C -0.160 4.160 5 C 0.048 3.952 6 H 0.092 0.908 7 O -0.397 6.397 8 C -0.200 4.200 9 C -0.019 4.019 10 N -0.350 5.350 11 C 0.298 3.702 12 O -0.442 6.442 13 C -0.118 4.118 14 C -0.143 4.143 15 C -0.076 4.076 16 C -0.262 4.262 17 C 0.062 3.938 18 O -0.141 6.141 19 C -0.489 4.489 20 H 0.118 0.882 21 C -0.223 4.223 22 N -0.561 5.561 23 Si 0.839 3.161 24 H -0.175 1.175 25 H -0.190 1.190 26 H -0.194 1.194 27 C -0.226 4.226 28 C -0.076 4.076 29 H 0.058 0.942 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.100 0.900 34 H 0.246 0.754 35 H 0.080 0.920 36 H 0.127 0.873 37 H 0.128 0.872 38 H 0.111 0.889 39 H 0.142 0.858 40 H 0.146 0.854 41 H 0.156 0.844 42 H 0.135 0.865 43 H 0.082 0.918 44 H 0.128 0.872 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 23.195 7.756 17.857 30.282 hybrid contribution -0.484 0.105 -0.792 0.934 sum 22.711 7.861 17.065 29.475 Atomic orbital electron populations 1.22027 0.94162 1.01928 1.00738 1.21266 0.94533 0.95876 0.83587 0.89302 1.21992 0.95269 1.01045 0.97693 1.21769 0.93402 0.95612 0.84454 0.90799 1.86502 1.28970 1.81975 1.42228 1.22638 1.03341 0.99662 0.94368 1.22025 0.78194 1.02260 0.99456 1.48343 1.08422 1.58241 1.19953 1.21141 0.85712 0.79577 0.83732 1.90808 1.19290 1.56968 1.77095 1.20601 0.96503 1.01792 0.92900 1.19240 1.00545 0.96181 0.98361 1.20912 0.95043 0.98303 0.93370 1.21225 1.00832 0.99532 1.04617 1.19921 0.88655 0.94581 0.90663 1.83936 1.44756 1.43748 1.41685 1.21860 1.12474 1.02043 1.12504 0.88234 1.26627 0.94518 1.00305 1.00801 1.70195 1.17147 1.28450 1.40266 0.84510 0.78789 0.76580 0.76175 1.17497 1.19024 1.19441 1.20414 1.02982 1.01620 0.97535 1.20830 0.92885 0.97010 0.96897 0.94232 0.92503 0.92484 0.92855 0.90028 0.75353 0.92025 0.87332 0.87195 0.88919 0.85834 0.85444 0.84351 0.86509 0.91848 0.87195 0.84024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.20 7.62 71.98 0.55 -2.66 16 2 C 0.15 2.63 3.51 45.12 0.16 2.78 16 3 H 0.09 1.26 8.14 -2.38 -0.02 1.24 16 4 C -0.12 -1.86 5.05 30.82 0.16 -1.71 16 5 C 0.11 1.07 3.43 30.62 0.10 1.17 16 6 H 0.07 0.51 8.14 -2.38 -0.02 0.49 16 7 O -0.59 -6.91 13.32 -148.98 -1.98 -8.89 16 8 C -0.16 -1.13 5.70 30.67 0.17 -0.95 16 9 C 0.10 0.80 6.35 86.36 0.55 1.35 16 10 N -0.61 -10.43 2.97 -794.23 -2.36 -12.78 16 11 C 0.51 12.43 7.50 87.65 0.66 13.09 16 12 O -0.56 -19.69 11.60 -3.02 -0.04 -19.72 16 13 C -0.08 -1.59 4.18 29.10 0.12 -1.47 16 14 C -0.14 -4.56 4.38 -19.84 -0.09 -4.65 16 15 C -0.06 -2.11 9.69 22.25 0.22 -1.90 16 16 C -0.24 -11.24 9.17 22.39 0.21 -11.03 16 17 C 0.11 5.93 6.65 22.58 0.15 6.08 16 18 O -0.23 -14.81 9.76 -22.67 -0.22 -15.03 16 19 C -0.41 -25.07 9.49 67.92 0.64 -24.43 16 20 H 0.10 5.59 5.20 -2.91 -0.02 5.57 16 21 C -0.03 -1.50 5.49 84.84 0.47 -1.03 16 22 N -0.92 -58.42 13.67 21.61 0.30 -58.13 16 23 Si 1.02 44.38 29.55 68.60 2.03 46.41 16 24 H -0.25 -10.12 7.11 99.48 0.71 -9.42 16 25 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 26 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 27 C -0.21 -9.45 9.99 22.39 0.22 -9.23 16 28 C -0.06 -2.10 9.69 22.25 0.22 -1.88 16 29 H 0.04 1.17 6.95 -2.39 -0.02 1.15 16 30 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.06 1.70 6.55 -2.39 -0.02 1.68 16 32 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.40 0.98 9.08 -74.05 -0.67 0.31 16 35 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.11 0.15 8.14 -2.39 -0.02 0.13 16 37 H 0.11 0.52 5.93 -2.39 -0.01 0.51 16 38 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 39 H 0.12 1.79 7.87 -2.38 -0.02 1.77 16 40 H 0.13 1.72 7.65 -2.39 -0.02 1.71 16 41 H 0.14 4.01 8.06 -2.91 -0.02 3.99 16 42 H 0.12 5.49 5.64 -2.91 -0.02 5.47 16 43 H 0.27 15.73 8.31 -92.70 -0.77 14.95 16 44 H 0.11 5.00 8.06 -2.91 -0.02 4.98 16 45 H 0.14 4.08 8.06 -2.91 -0.02 4.06 16 Total: -1.00 -85.02 362.55 2.57 -82.45 By element: Atomic # 1 Polarization: 21.83 SS G_CDS: 0.34 Total: 22.17 kcal Atomic # 6 Polarization: -40.96 SS G_CDS: 4.50 Total: -36.46 kcal Atomic # 7 Polarization: -68.85 SS G_CDS: -2.06 Total: -70.91 kcal Atomic # 8 Polarization: -41.41 SS G_CDS: -2.24 Total: -43.65 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -85.02 2.57 -82.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294260792.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.442 kcal (2) G-P(sol) polarization free energy of solvation -85.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds