Wall clock time and date at job start Tue Mar 31 2020 13:21:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 110.05466 * 2 1 4 4 C 1.54368 * 110.04772 * 238.52486 * 2 1 3 5 5 C 1.54896 * 104.19542 * 217.09126 * 4 2 1 6 6 C 1.54885 * 102.74891 * 37.96709 * 5 4 2 7 7 C 1.53876 * 110.02889 * 121.41058 * 2 1 3 8 8 O 1.42899 * 110.03400 * 238.61600 * 7 2 1 9 9 C 1.52997 * 110.03442 * 0.02562 * 7 2 1 10 10 N 1.46501 * 109.46910 * 179.30552 * 9 7 2 11 11 C 1.34780 * 119.99519 * 180.02562 * 10 9 7 12 12 O 1.21590 * 120.00517 * 359.97438 * 11 10 9 13 13 C 1.47535 * 119.99858 * 180.02562 * 11 10 9 14 14 C 1.39666 * 120.19586 * 359.97438 * 13 11 10 15 15 C 1.37830 * 119.92215 * 180.02562 * 14 13 11 16 16 C 1.38580 * 120.32044 * 0.02562 * 15 14 13 17 17 C 1.38026 * 120.40073 * 0.02562 * 16 15 14 18 18 C 1.38831 * 120.07219 * 359.97438 * 17 16 15 19 19 O 1.35519 * 120.16258 * 180.02562 * 18 17 16 20 20 C 1.34818 * 116.99958 * 354.40220 * 19 18 17 21 21 H 1.08006 * 120.00015 * 5.06651 * 20 19 18 22 22 C 1.38700 * 120.00127 * 185.06409 * 20 19 18 23 23 N 1.31517 * 120.00115 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 119.99756 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47478 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.47005 * 120.00188 * 24 22 20 27 27 H 1.48497 * 109.47437 * 239.99818 * 24 22 20 28 28 H 1.08997 * 109.47115 * 298.58548 * 1 2 3 29 29 H 1.09001 * 109.46897 * 58.58555 * 1 2 3 30 30 H 1.08998 * 109.46912 * 178.58191 * 1 2 3 31 31 H 1.08997 * 110.46596 * 98.42772 * 4 2 1 32 32 H 1.09000 * 110.62276 * 335.83593 * 4 2 1 33 33 H 1.09004 * 110.75516 * 279.65280 * 5 4 2 34 34 H 1.08999 * 110.91435 * 156.35632 * 5 4 2 35 35 H 1.08999 * 110.48716 * 203.37463 * 6 5 4 36 36 H 1.09005 * 110.48484 * 80.73586 * 6 5 4 37 37 H 0.96698 * 114.00214 * 180.68983 * 8 7 2 38 38 H 1.09001 * 109.47075 * 59.30375 * 9 7 2 39 39 H 1.09001 * 109.46924 * 299.30937 * 9 7 2 40 40 H 0.96994 * 120.00077 * 0.02562 * 10 9 7 41 41 H 1.08003 * 120.04125 * 359.97438 * 14 13 11 42 42 H 1.08001 * 119.84371 * 180.02562 * 15 14 13 43 43 H 1.07999 * 119.79694 * 180.27597 * 16 15 14 44 44 H 1.07998 * 119.96115 * 179.97438 * 17 16 15 45 45 H 0.96995 * 119.99986 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9038 1.0240 0.0000 4 6 2.0592 -0.7572 -1.2368 5 6 3.3147 -1.5015 -0.7180 6 6 2.8882 -1.9405 0.7047 7 6 2.0570 -0.7534 1.2338 8 8 2.8816 0.1098 2.0193 9 6 0.8861 -1.2672 2.0739 10 7 1.4013 -1.9962 3.2356 11 6 0.5456 -2.5423 4.1222 12 8 -0.6539 -2.4296 3.9582 13 6 1.0645 -3.2759 5.2923 14 6 2.4415 -3.4075 5.4850 15 6 2.9200 -4.0945 6.5799 16 6 2.0411 -4.6569 7.4918 17 6 0.6777 -4.5359 7.3138 18 6 0.1777 -3.8474 6.2168 19 8 -1.1605 -3.7270 6.0406 20 6 -1.9538 -4.3961 6.9011 21 1 -1.5191 -4.9271 7.7351 22 6 -3.3283 -4.4026 6.7155 23 7 -3.8579 -3.7557 5.7002 24 14 -4.4274 -5.3303 7.9075 25 1 -3.5922 -5.9695 8.9559 26 1 -5.3792 -4.3836 8.5424 27 1 -5.1846 -6.3748 7.1722 28 1 -0.3633 0.4917 0.9024 29 1 -0.3633 0.5357 -0.8770 30 1 -0.3633 -1.0273 -0.0254 31 1 2.3304 -0.0558 -2.0258 32 1 1.3164 -1.4682 -1.5984 33 1 4.1717 -0.8293 -0.6743 34 1 3.5373 -2.3688 -1.3395 35 1 3.7643 -2.1027 1.3326 36 1 2.2783 -2.8428 0.6588 37 1 3.2532 -0.3106 2.8068 38 1 0.2707 -1.9341 1.4701 39 1 0.2839 -0.4239 2.4119 40 1 2.3582 -2.0858 3.3666 41 1 3.1306 -2.9721 4.7765 42 1 3.9851 -4.1950 6.7279 43 1 2.4253 -5.1896 8.3492 44 1 -0.0008 -4.9773 8.0287 45 1 -4.8190 -3.7606 5.5702 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294534606.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:05 Heat of formation + Delta-G solvation = -92.433545 kcal Electronic energy + Delta-G solvation = -27270.155391 eV Core-core repulsion = 23446.082878 eV Total energy + Delta-G solvation = -3824.072512 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.25167 -39.34167 -37.82501 -36.34980 -35.33900 -33.76426 -32.35258 -31.72217 -30.70725 -28.96478 -28.67540 -25.57340 -25.24603 -24.53992 -22.79965 -21.45381 -21.18353 -19.89738 -19.12302 -18.10004 -17.80369 -16.86795 -16.28787 -15.83305 -15.37489 -15.02448 -14.68258 -14.60665 -14.27872 -14.09063 -13.87791 -13.80610 -13.69691 -13.07145 -13.04691 -12.84158 -12.56055 -12.41079 -12.16154 -11.73300 -11.69693 -11.54475 -11.31881 -11.25255 -11.14295 -10.92976 -10.83972 -10.81917 -10.76031 -10.48307 -10.44808 -9.95451 -9.58727 -8.90028 -8.87322 -8.59013 -8.29227 -7.32843 -6.45859 -4.05811 1.69434 2.29672 3.10977 3.11691 3.17548 3.60061 3.72724 3.92325 3.96704 4.31111 4.45288 4.58660 4.62553 4.99360 5.04844 5.13506 5.14916 5.16763 5.35705 5.35852 5.40443 5.44389 5.50297 5.60295 5.67665 5.69673 5.74698 5.83002 5.86634 5.91071 5.99374 6.05071 6.09585 6.11329 6.20186 6.28862 6.53770 6.66455 6.87622 6.90209 7.03897 7.21812 7.27654 7.51918 7.67273 7.90056 8.05949 8.93819 9.07080 9.66059 10.67996 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.015250 B = 0.003548 C = 0.002991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.570270 B = 7890.516607 C = 9358.684473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.078 4.078 3 H 0.086 0.914 4 C -0.120 4.120 5 C -0.121 4.121 6 C -0.152 4.152 7 C 0.122 3.878 8 O -0.554 6.554 9 C 0.101 3.899 10 N -0.745 5.745 11 C 0.555 3.445 12 O -0.499 6.499 13 C -0.228 4.228 14 C -0.039 4.039 15 C -0.231 4.231 16 C -0.051 4.051 17 C -0.237 4.237 18 C 0.189 3.811 19 O -0.124 6.124 20 C -0.404 4.404 21 H 0.095 0.905 22 C 0.045 3.955 23 N -0.832 5.832 24 Si 0.941 3.059 25 H -0.265 1.265 26 H -0.275 1.275 27 H -0.275 1.275 28 H 0.064 0.936 29 H 0.058 0.942 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.071 0.929 36 H 0.079 0.921 37 H 0.373 0.627 38 H 0.076 0.924 39 H 0.074 0.926 40 H 0.386 0.614 41 H 0.110 0.890 42 H 0.109 0.891 43 H 0.110 0.890 44 H 0.132 0.868 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.885 3.401 -8.864 16.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.097 4.097 3 H 0.105 0.895 4 C -0.157 4.157 5 C -0.158 4.158 6 C -0.189 4.189 7 C 0.081 3.919 8 O -0.360 6.360 9 C -0.023 4.023 10 N -0.402 5.402 11 C 0.344 3.656 12 O -0.372 6.372 13 C -0.233 4.233 14 C -0.058 4.058 15 C -0.250 4.250 16 C -0.069 4.069 17 C -0.257 4.257 18 C 0.130 3.870 19 O -0.022 6.022 20 C -0.480 4.480 21 H 0.112 0.888 22 C -0.163 4.163 23 N -0.463 5.463 24 Si 0.765 3.235 25 H -0.190 1.190 26 H -0.200 1.200 27 H -0.200 1.200 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.089 0.911 36 H 0.098 0.902 37 H 0.221 0.779 38 H 0.094 0.906 39 H 0.092 0.908 40 H 0.221 0.779 41 H 0.127 0.873 42 H 0.127 0.873 43 H 0.128 0.872 44 H 0.149 0.851 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 12.357 4.098 -9.734 16.256 hybrid contribution 0.200 -0.988 1.240 1.598 sum 12.557 3.110 -8.494 15.476 Atomic orbital electron populations 1.22035 0.94018 1.02752 1.02386 1.21655 0.96001 1.00163 0.91921 0.89538 1.22482 0.97427 0.99024 0.96816 1.22427 0.97837 0.99880 0.95687 1.23100 0.99988 0.98406 0.97438 1.22174 0.89246 0.89518 0.90921 1.86566 1.67566 1.41285 1.40537 1.22150 0.96094 0.96775 0.87307 1.45886 1.09273 1.58799 1.26272 1.18219 0.86215 0.78916 0.82214 1.90953 1.14289 1.57433 1.74551 1.18843 0.92514 1.12835 0.99063 1.20724 0.92723 0.95988 0.96328 1.20458 0.98516 1.07561 0.98431 1.20900 0.92890 0.95927 0.97224 1.21166 0.95751 1.07795 1.00952 1.19270 0.85356 0.91014 0.91398 1.84173 1.10270 1.58207 1.49532 1.21553 0.87978 1.31018 1.07420 0.88807 1.25389 0.96395 0.97095 0.97435 1.70136 1.12426 1.37021 1.26742 0.85660 0.79656 0.78908 0.79259 1.18961 1.20001 1.19998 0.91670 0.92305 0.91741 0.91388 0.91092 0.91312 0.91469 0.91054 0.90233 0.77921 0.90620 0.90780 0.77948 0.87257 0.87270 0.87174 0.85062 0.91898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 7.89 37.16 0.29 -1.37 16 2 C -0.08 -0.82 3.32 -89.45 -0.30 -1.12 16 3 H 0.09 0.94 7.96 -51.93 -0.41 0.53 16 4 C -0.12 -1.05 6.36 -25.01 -0.16 -1.21 16 5 C -0.12 -1.04 6.91 -24.74 -0.17 -1.21 16 6 C -0.15 -1.48 5.51 -25.07 -0.14 -1.61 16 7 C 0.12 1.38 1.03 -89.50 -0.09 1.29 16 8 O -0.55 -6.41 12.90 -35.23 -0.45 -6.86 16 9 C 0.10 1.46 3.48 -4.04 -0.01 1.45 16 10 N -0.75 -11.65 5.07 -61.35 -0.31 -11.96 16 11 C 0.55 12.06 7.76 -12.47 -0.10 11.96 16 12 O -0.50 -13.61 15.17 -16.57 -0.25 -13.86 16 13 C -0.23 -4.88 5.89 -104.81 -0.62 -5.50 16 14 C -0.04 -0.65 9.53 -39.20 -0.37 -1.02 16 15 C -0.23 -3.70 10.03 -39.60 -0.40 -4.09 16 16 C -0.05 -0.89 10.03 -39.53 -0.40 -1.28 16 17 C -0.24 -5.07 9.16 -39.44 -0.36 -5.43 16 18 C 0.19 4.68 6.66 -38.60 -0.26 4.42 16 19 O -0.12 -3.65 7.84 -21.06 -0.17 -3.81 16 20 C -0.40 -11.42 9.49 30.90 0.29 -11.12 16 21 H 0.09 2.41 5.21 -52.48 -0.27 2.13 16 22 C 0.04 1.24 5.49 -17.52 -0.10 1.15 16 23 N -0.83 -25.06 13.67 55.48 0.76 -24.30 16 24 Si 0.94 20.49 29.55 -169.99 -5.02 15.47 16 25 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 26 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 27 H -0.27 -5.86 7.11 56.52 0.40 -5.45 16 28 H 0.06 0.78 6.76 -51.93 -0.35 0.43 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.73 6.70 -51.93 -0.35 0.38 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.61 7.85 -51.93 -0.41 0.20 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.61 8.05 -51.93 -0.42 0.20 16 36 H 0.08 0.84 7.84 -51.93 -0.41 0.43 16 37 H 0.37 3.37 7.85 45.56 0.36 3.73 16 38 H 0.08 1.18 6.68 -51.93 -0.35 0.83 16 39 H 0.07 1.21 6.78 -51.93 -0.35 0.86 16 40 H 0.39 4.69 5.23 -40.82 -0.21 4.47 16 41 H 0.11 1.36 6.40 -52.48 -0.34 1.02 16 42 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 43 H 0.11 1.57 8.06 -52.49 -0.42 1.14 16 44 H 0.13 2.77 5.64 -52.49 -0.30 2.48 16 45 H 0.27 7.42 8.31 -40.82 -0.34 7.09 16 LS Contribution 360.01 15.07 5.43 5.43 Total: -1.00 -34.85 360.01 -8.38 -43.23 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: -5.48 Total: 11.38 kcal Atomic # 6 Polarization: -11.83 SS G_CDS: -2.88 Total: -14.71 kcal Atomic # 7 Polarization: -36.71 SS G_CDS: 0.45 Total: -36.26 kcal Atomic # 8 Polarization: -23.67 SS G_CDS: -0.87 Total: -24.54 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -34.85 -8.38 -43.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294534606.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.203 kcal (2) G-P(sol) polarization free energy of solvation -34.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds