Wall clock time and date at job start Tue Mar 31 2020 13:08:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46812 * 2 1 4 4 O 1.42901 * 109.46903 * 180.02562 * 3 2 1 5 5 C 1.35715 * 116.99993 * 180.02562 * 4 3 2 6 6 C 1.39176 * 119.86072 * 0.02562 * 5 4 3 7 7 C 1.36549 * 120.37857 * 180.02562 * 6 5 4 8 8 C 1.39887 * 120.08011 * 0.02562 * 7 6 5 9 9 C 1.47202 * 120.14071 * 179.97438 * 8 7 6 10 10 O 1.21662 * 120.00057 * 143.44534 * 9 8 7 11 11 N 1.34775 * 120.00395 * 323.44803 * 9 8 7 12 12 C 1.36937 * 119.99527 * 8.88129 * 11 9 8 13 13 H 1.08000 * 120.00024 * 308.81215 * 12 11 9 14 14 C 1.38997 * 119.99679 * 128.81670 * 12 11 9 15 15 N 1.31398 * 120.00311 * 340.73463 * 14 12 11 16 16 Si 1.86802 * 119.99829 * 160.74239 * 14 12 11 17 17 H 1.48501 * 109.47161 * 179.97438 * 16 14 12 18 18 H 1.48506 * 109.46776 * 299.99625 * 16 14 12 19 19 H 1.48499 * 109.47574 * 59.99546 * 16 14 12 20 20 C 1.46497 * 120.00616 * 188.88003 * 11 9 8 21 21 C 1.52998 * 117.50138 * 180.72085 * 20 11 9 22 22 C 1.53005 * 117.49604 * 112.05815 * 20 11 9 23 23 C 1.40383 * 119.72142 * 0.25939 * 8 7 6 24 24 O 1.35654 * 120.18656 * 179.70049 * 23 8 7 25 25 C 1.42903 * 116.99877 * 179.97438 * 24 23 8 26 26 C 1.38465 * 119.62680 * 359.44992 * 23 8 7 27 27 H 1.08995 * 109.47541 * 59.99972 * 1 2 3 28 28 H 1.09001 * 109.47088 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46731 * 299.99390 * 1 2 3 30 30 H 1.09004 * 109.46731 * 240.00610 * 2 1 3 31 31 H 1.08995 * 109.47541 * 120.00028 * 2 1 3 32 32 H 1.08995 * 109.47004 * 60.00480 * 3 2 1 33 33 H 1.08997 * 109.47504 * 299.99973 * 3 2 1 34 34 H 1.08005 * 119.81185 * 359.97438 * 6 5 4 35 35 H 1.08001 * 119.95776 * 179.97438 * 7 6 5 36 36 H 0.97002 * 119.99742 * 175.08448 * 15 14 12 37 37 H 1.09001 * 115.54984 * 326.39794 * 20 11 9 38 38 H 1.09003 * 117.50010 * 0.02562 * 21 20 11 39 39 H 1.09000 * 117.50085 * 145.02315 * 21 20 11 40 40 H 1.09000 * 117.49599 * 214.97828 * 22 20 11 41 41 H 1.08993 * 117.49907 * 359.97438 * 22 20 11 42 42 H 1.08998 * 109.47054 * 179.97438 * 25 24 23 43 43 H 1.08994 * 109.47518 * 300.00448 * 25 24 23 44 44 H 1.09007 * 109.47094 * 60.00549 * 25 24 23 45 45 H 1.08000 * 120.04330 * 180.27253 * 26 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 3.4689 1.4425 -0.0006 5 6 4.0851 2.6518 -0.0001 6 6 3.3242 3.8172 0.0014 7 6 3.9331 5.0394 0.0014 8 6 5.3292 5.1272 -0.0008 9 6 5.9869 6.4441 -0.0014 10 8 7.0169 6.6099 0.6245 11 7 5.4482 7.4662 -0.6954 12 6 4.2022 7.3367 -1.2484 13 1 3.9722 6.4819 -1.8671 14 6 3.2336 8.3055 -1.0135 15 7 3.3570 9.1242 0.0068 16 14 1.7561 8.4433 -2.1481 17 1 0.8769 9.5466 -1.6843 18 1 2.2185 8.7262 -3.5307 19 1 0.9980 7.1665 -2.1313 20 6 6.1956 8.7156 -0.8580 21 6 5.5229 9.8443 -1.6419 22 6 6.6861 9.0675 -2.2640 23 6 6.1003 3.9541 -0.0084 24 8 7.4548 4.0283 -0.0167 25 6 8.1722 2.7924 -0.0236 26 6 5.4706 2.7210 -0.0022 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6766 1.9564 -0.8899 34 1 2.2460 3.7544 0.0018 35 1 3.3360 5.9393 0.0022 36 1 2.7199 9.8452 0.1299 37 1 6.8317 8.9957 -0.0183 38 1 4.5240 9.6573 -2.0363 39 1 5.7166 10.8669 -1.3182 40 1 7.6446 9.5795 -2.3491 41 1 6.4531 8.3691 -3.0677 42 1 9.2433 2.9941 -0.0303 43 1 7.9157 2.2184 0.8668 44 1 7.9047 2.2220 -0.9132 45 1 6.0573 1.8142 -0.0036 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294610626.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:08:11 Heat of formation + Delta-G solvation = -45.662988 kcal Electronic energy + Delta-G solvation = -27502.724370 eV Core-core repulsion = 23680.679981 eV Total energy + Delta-G solvation = -3822.044389 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.23492 -38.94282 -38.31095 -36.24448 -35.71466 -33.99216 -33.09641 -31.39299 -29.97902 -29.48417 -26.87680 -26.61496 -25.15739 -23.01672 -22.38893 -21.39758 -21.10432 -20.51032 -19.27468 -18.41122 -17.14878 -16.43429 -16.29364 -16.03101 -15.75263 -15.32742 -15.06645 -14.73493 -14.54038 -14.15072 -13.75948 -13.69950 -13.31225 -13.05411 -12.95029 -12.51668 -12.26687 -12.16075 -12.04718 -11.95529 -11.52607 -11.48264 -11.35982 -11.21641 -11.15090 -10.87742 -10.74819 -10.53318 -10.38783 -10.37469 -10.16273 -9.63910 -9.25835 -8.76925 -8.38776 -8.13740 -7.51950 -7.19994 -6.35135 -4.17959 1.70175 1.95935 3.08616 3.17690 3.19685 3.22262 3.73181 3.84851 4.05996 4.46210 4.68576 4.72568 4.73911 4.86064 5.04322 5.21651 5.24559 5.27540 5.28155 5.35265 5.40064 5.40548 5.56246 5.65924 5.71646 5.73864 5.83816 5.86821 6.02592 6.04079 6.04404 6.18292 6.22030 6.34951 6.53060 6.67547 6.79267 6.87371 7.03400 7.12785 7.19508 7.31503 7.41113 7.62270 7.88470 8.11651 8.37141 9.03419 9.55106 10.00158 10.63243 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.011085 B = 0.004915 C = 0.003572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2525.355128 B = 5695.968360 C = 7837.002923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.123 4.123 3 C 0.058 3.942 4 O -0.319 6.319 5 C 0.171 3.829 6 C -0.263 4.263 7 C 0.012 3.988 8 C -0.165 4.165 9 C 0.543 3.457 10 O -0.583 6.583 11 N -0.418 5.418 12 C -0.352 4.352 13 H 0.085 0.915 14 C 0.058 3.942 15 N -0.838 5.838 16 Si 0.892 3.108 17 H -0.282 1.282 18 H -0.270 1.270 19 H -0.269 1.269 20 C 0.114 3.886 21 C -0.153 4.153 22 C -0.216 4.216 23 C 0.198 3.802 24 O -0.286 6.286 25 C 0.025 3.975 26 C -0.265 4.265 27 H 0.058 0.942 28 H 0.062 0.938 29 H 0.058 0.942 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.124 0.876 35 H 0.172 0.828 36 H 0.270 0.730 37 H 0.104 0.896 38 H 0.107 0.893 39 H 0.075 0.925 40 H 0.078 0.922 41 H 0.086 0.914 42 H 0.096 0.904 43 H 0.053 0.947 44 H 0.051 0.949 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.209 -12.752 -1.798 13.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.018 4.018 4 O -0.233 6.233 5 C 0.126 3.874 6 C -0.282 4.282 7 C -0.007 4.007 8 C -0.169 4.169 9 C 0.333 3.667 10 O -0.466 6.466 11 N -0.137 5.137 12 C -0.480 4.480 13 H 0.103 0.897 14 C -0.151 4.151 15 N -0.471 5.471 16 Si 0.717 3.283 17 H -0.207 1.207 18 H -0.195 1.195 19 H -0.194 1.194 20 C 0.008 3.992 21 C -0.190 4.190 22 C -0.255 4.255 23 C 0.151 3.849 24 O -0.197 6.197 25 C -0.071 4.071 26 C -0.284 4.284 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.142 0.858 35 H 0.189 0.811 36 H 0.080 0.920 37 H 0.122 0.878 38 H 0.125 0.875 39 H 0.094 0.906 40 H 0.097 0.903 41 H 0.105 0.895 42 H 0.115 0.885 43 H 0.071 0.929 44 H 0.070 0.930 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -2.619 -12.541 -1.331 12.880 hybrid contribution -1.092 0.073 -0.690 1.294 sum -3.711 -12.468 -2.021 13.164 Atomic orbital electron populations 1.21692 0.94373 1.02285 1.02386 1.21478 0.95956 0.95130 1.03457 1.22860 0.78684 0.98342 1.01877 1.85922 1.21164 1.27725 1.88492 1.18790 0.91357 0.83797 0.93486 1.20908 0.99830 0.92247 1.15254 1.21732 0.93340 0.98566 0.87020 1.19286 0.93052 0.92030 1.12553 1.17922 0.84671 0.84480 0.79654 1.90642 1.26785 1.84439 1.44777 1.42528 1.14612 1.10126 1.46393 1.19126 0.86681 1.11664 1.30487 0.89747 1.25400 0.97613 0.97387 0.94692 1.70070 1.36863 1.16396 1.23770 0.86582 0.81790 0.78548 0.81336 1.20709 1.19528 1.19420 1.21117 0.97532 0.88066 0.92450 1.23071 0.97705 0.94786 1.03449 1.23348 0.97992 1.04993 0.99144 1.18733 0.82443 0.92053 0.91710 1.86315 1.14933 1.31106 1.87330 1.23048 0.96977 0.86127 1.00916 1.20095 0.92402 0.96870 1.19067 0.92292 0.91925 0.92292 0.90996 0.90994 0.91841 0.91826 0.85769 0.81089 0.91966 0.87839 0.87450 0.90634 0.90347 0.89537 0.88543 0.92880 0.93012 0.85081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.91 37.16 0.37 -0.72 16 2 C -0.12 -1.11 6.30 -26.73 -0.17 -1.28 16 3 C 0.06 0.67 4.73 37.16 0.18 0.84 16 4 O -0.32 -4.78 10.12 -18.85 -0.19 -4.97 16 5 C 0.17 2.94 6.69 -39.05 -0.26 2.68 16 6 C -0.26 -4.68 8.96 -39.84 -0.36 -5.04 16 7 C 0.01 0.24 7.84 -39.57 -0.31 -0.07 16 8 C -0.17 -3.81 5.53 -104.83 -0.58 -4.39 16 9 C 0.54 14.28 7.18 -12.62 -0.09 14.19 16 10 O -0.58 -16.64 15.80 -11.98 -0.19 -16.83 16 11 N -0.42 -10.74 2.72 -109.01 -0.30 -11.04 16 12 C -0.35 -8.65 5.34 -14.99 -0.08 -8.73 16 13 H 0.09 2.05 6.80 -52.49 -0.36 1.70 16 14 C 0.06 1.39 2.82 -17.46 -0.05 1.34 16 15 N -0.84 -21.32 12.00 55.50 0.67 -20.66 16 16 Si 0.89 18.45 29.21 -169.99 -4.96 13.49 16 17 H -0.28 -5.86 7.11 56.52 0.40 -5.45 16 18 H -0.27 -5.61 7.11 56.52 0.40 -5.20 16 19 H -0.27 -5.43 7.11 56.52 0.40 -5.02 16 20 C 0.11 2.76 5.65 -67.93 -0.38 2.38 16 21 C -0.15 -3.35 8.48 -26.69 -0.23 -3.57 16 22 C -0.22 -4.51 10.40 -26.69 -0.28 -4.79 16 23 C 0.20 4.09 6.66 -38.69 -0.26 3.84 16 24 O -0.29 -5.77 9.18 -35.87 -0.33 -6.10 16 25 C 0.02 0.34 9.81 101.05 0.99 1.33 16 26 C -0.26 -4.67 8.97 -39.32 -0.35 -5.03 16 27 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.71 7.64 -51.93 -0.40 0.31 16 33 H 0.06 0.72 7.65 -51.93 -0.40 0.32 16 34 H 0.12 1.89 6.26 -52.48 -0.33 1.56 16 35 H 0.17 3.85 5.43 -52.49 -0.28 3.56 16 36 H 0.27 6.53 8.32 -40.82 -0.34 6.19 16 37 H 0.10 2.61 7.77 -51.93 -0.40 2.21 16 38 H 0.11 2.51 4.95 -51.93 -0.26 2.25 16 39 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 40 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 41 H 0.09 1.83 8.14 -51.93 -0.42 1.41 16 42 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.05 0.65 7.65 -51.93 -0.40 0.25 16 44 H 0.05 0.62 7.68 -51.92 -0.40 0.22 16 45 H 0.13 1.97 6.31 -52.49 -0.33 1.64 16 LS Contribution 365.36 15.07 5.51 5.51 Total: -1.00 -30.35 365.36 -8.15 -38.50 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: -6.49 Total: 9.12 kcal Atomic # 6 Polarization: -5.16 SS G_CDS: -1.86 Total: -7.02 kcal Atomic # 7 Polarization: -32.06 SS G_CDS: 0.37 Total: -31.69 kcal Atomic # 8 Polarization: -27.19 SS G_CDS: -0.71 Total: -27.90 kcal Atomic # 14 Polarization: 18.45 SS G_CDS: -4.96 Total: 13.49 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.35 -8.15 -38.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294610626.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.163 kcal (2) G-P(sol) polarization free energy of solvation -30.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds